SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
Fold d.116: YbaK/ProRS associated domain [55825] (1 superfamily)
core: alpha-beta-alpha-beta(2)-(alpha-beta)2-alpha-beta(2)-alpha-beta; 3 layers; bifurcated mixed sheet
Superfamily d.116.1: YbaK/ProRS associated domain [55826] (2 families)
Family d.116.1.0: automated matches [191417] (1 protein)
not a true family
Protein automated matches [190578] (4 species)
not a true protein

Species:

Escherichia coli [TaxId:562] [187647] (1 PDB entry)
- Domain for 2dxa:
  - Domain d2dxaa_: 2dxa A: [163735]
    automated match to d1dbua_
    complexed with cl
Legionella pneumophila [TaxId:272624] [196423] (1 PDB entry)
- Domains for 3op6:
  1. Domain d3op6a_: 3op6 A: [200121]
    automated match to d3op6b_
    complexed with edo
  2. Domain d3op6b_: 3op6 B: [196424]
    automated match to d2dxaa_
    complexed with edo
Thermus thermophilus HB8 [TaxId:300852] [188266] (3 PDB entries)
1. Domain for 2z0k:
  - Domain d2z0ka_: 2z0k A: [170956]
    automated match to d1wdva_
    protein/RNA complex; complexed with a5a
2. Domains for 3ri0:
  1. Domain d3ri0a_: 3ri0 A: [184974]
    Other proteins in same PDB: d3ri0b2
    automated match to d1wdva_
    complexed with gol, so4
  2. Domain d3ri0b1: 3ri0 B:3-158 [184975]
    Other proteins in same PDB: d3ri0b2
    automated match to d1wdva_
    complexed with gol, so4
3. Domains for 3rij:
  1. Domain d3rija_: 3rij A: [184986]
    automated match to d1wdva_
    complexed with gol
  2. Domain d3rijb_: 3rij B: [184987]
    automated match to d1wdva_
    complexed with gol
  3. Domain d3rijc_: 3rij C: [184988]
    automated match to d1wdva_
    complexed with gol
  4. Domain d3rijd_: 3rij D: [184989]
    automated match to d1wdva_
    complexed with gol
Thermus thermophilus [TaxId:274] [187579] (2 PDB entries)
1. Domains for 2cx5:
  1. Domain d2cx5a_: 2cx5 A: [163485]
    automated match to d1wdva_
  2. Domain d2cx5b_: 2cx5 B: [163486]
    automated match to d1wdva_
  3. Domain d2cx5c_: 2cx5 C: [163487]
    automated match to d1wdva_
  4. Domain d2cx5d_: 2cx5 D: [163488]
    automated match to d1wdva_
2. Domain for 2z0x:
  - Domain d2z0xa_: 2z0x A: [170963]
    automated match to d1wdva_
    complexed with 5ca

More info for Protein automated matches from d.116.1.0: automated matches

Timeline for Protein automated matches from d.116.1.0: automated matches:

Protein automated matches from d.116.1.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from d.116.1.0: automated matches appears in SCOPe 2.07