Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1755445Class b: All beta proteins [48724] (176 folds)
  3. 1787538Fold b.40: OB-fold [50198] (16 superfamilies)
    barrel, closed or partly opened n=5, S=10 or S=8; greek-key
  4. 1788689Superfamily b.40.4: Nucleic acid-binding proteins [50249] (17 families) (S)
  5. 1789742Family b.40.4.0: automated matches [191416] (1 protein)
    not a true family
  6. 1789743Protein automated matches [190576] (23 species)
    not a true protein

Species:

  1. 1789744Agrobacterium tumefaciens [TaxId:176299] [188408] (2 PDB entries)
    1. Domains for 2q2h:
      1. 1789747Domain d2q2ha_: 2q2h A: [198268]
        automated match to d2q2hb_
        complexed with act, cit
      2. 1789748Domain d2q2hb_: 2q2h B: [195196]
        automated match to d2q2ia_
        complexed with act, cit
    2. Domains for 2q2i:
      1. 1789745Domain d2q2ia_: 2q2i A: [167395]
        automated match to d1gd7a_
        complexed with edo, so4
      2. 1789746Domain d2q2ib_: 2q2i B: [167396]
        automated match to d1gd7a_
        complexed with edo, so4
  2. 1789749Bacillus stearothermophilus [TaxId:1422] [225706] (2 PDB entries)
    1. Domains for 3e9h:
      1. 1789750Domain d3e9ha1: 3e9h A:4-145 [209425]
        Other proteins in same PDB: d3e9ha2, d3e9hb2, d3e9hc2, d3e9hd2
        automated match to d1bbua1
        protein/RNA complex; complexed with kaa, mg
      2. 1789751Domain d3e9hb1: 3e9h B:4-145 [209427]
        Other proteins in same PDB: d3e9ha2, d3e9hb2, d3e9hc2, d3e9hd2
        automated match to d1bbua1
        protein/RNA complex; complexed with kaa, mg
      3. 1789752Domain d3e9hc1: 3e9h C:4-145 [209429]
        Other proteins in same PDB: d3e9ha2, d3e9hb2, d3e9hc2, d3e9hd2
        automated match to d1bbua1
        protein/RNA complex; complexed with kaa, mg
      4. 1789753Domain d3e9hd1: 3e9h D:4-145 [209431]
        Other proteins in same PDB: d3e9ha2, d3e9hb2, d3e9hc2, d3e9hd2
        automated match to d1bbua1
        protein/RNA complex; complexed with kaa, mg
    2. Domains for 3e9i:
      1. 1789754Domain d3e9ia1: 3e9i A:4-145 [209433]
        Other proteins in same PDB: d3e9ia2, d3e9ib2, d3e9ic2, d3e9id2
        automated match to d1bbua1
        protein/RNA complex; complexed with 1pe, mg, xah
      2. 1789755Domain d3e9ib1: 3e9i B:4-145 [209435]
        Other proteins in same PDB: d3e9ia2, d3e9ib2, d3e9ic2, d3e9id2
        automated match to d1bbua1
        protein/RNA complex; complexed with 1pe, mg, xah
      3. 1789756Domain d3e9ic1: 3e9i C:4-145 [209437]
        Other proteins in same PDB: d3e9ia2, d3e9ib2, d3e9ic2, d3e9id2
        automated match to d1bbua1
        protein/RNA complex; complexed with 1pe, mg, xah
      4. 1789757Domain d3e9id1: 3e9i D:4-145 [209439]
        Other proteins in same PDB: d3e9ia2, d3e9ib2, d3e9ic2, d3e9id2
        automated match to d1bbua1
        protein/RNA complex; complexed with 1pe, mg, xah
  3. 1789758Bacillus subtilis [TaxId:1423] [187937] (2 PDB entries)
    1. Domains for 2nzh:
      1. 1789759Domain d2nzha_: 2nzh A: [166469]
        automated match to d1gd7a_
        complexed with gol
      2. 1789760Domain d2nzhb_: 2nzh B: [166470]
        automated match to d1gd7a_
        complexed with gol
    2. Domains for 2nzo:
      1. 1789761Domain d2nzoa_: 2nzo A: [166476]
        automated match to d1gd7a_
        complexed with gol
      2. 1789762Domain d2nzob_: 2nzo B: [166477]
        automated match to d1gd7a_
        complexed with gol
      3. 1789763Domain d2nzoc_: 2nzo C: [166478]
        automated match to d1gd7a_
        complexed with gol
      4. 1789764Domain d2nzod_: 2nzo D: [166479]
        automated match to d1gd7a_
        complexed with gol
  4. 1789765Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [225013] (2 PDB entries)
    1. Domain for 2a19:
    2. Domain for 2a1a:
  5. 1789768Bartonella henselae [TaxId:38323] [255930] (2 PDB entries)
    1. Domains for 3lgj:
      1. 1789771Domain d3lgja_: 3lgj A: [247462]
        automated match to d1eqqb_
        complexed with ca
      2. 1789772Domain d3lgjb_: 3lgj B: [247463]
        automated match to d1eqqb_
        complexed with ca
    2. Domains for 3pgz:
      1. 1789769Domain d3pgza_: 3pgz A: [248495]
        automated match to d1eqqb_
        complexed with unx
      2. 1789770Domain d3pgzb_: 3pgz B: [248496]
        automated match to d1eqqb_
        complexed with unx
  6. 1789773Chlamydomonas reinhardtii [TaxId:3055] [272201] (1 PDB entry)
  7. 1789775Coxiella burnetii [TaxId:777] [233711] (2 PDB entries)
    1. Domains for 3tqy:
      1. 1789776Domain d3tqya_: 3tqy A: [249990]
        automated match to d3ullb_
      2. 1789777Domain d3tqyb_: 3tqy B: [249991]
        automated match to d3ullb_
      3. 1789778Domain d3tqyc_: 3tqy C: [249992]
        automated match to d3ullb_
      4. 1789779Domain d3tqyd_: 3tqy D: [249993]
        automated match to d3ullb_
    2. Domain for 3tre:
  8. 1789781Escherichia coli [TaxId:562] [255345] (2 PDB entries)
    1. Domain for 2khj:
    2. Domain for 3a5z:
  9. 1789784Helicobacter pylori [TaxId:85962] [225690] (1 PDB entry)
  10. 1789787Human (Homo sapiens) [TaxId:9606] [225402] (8 PDB entries)
    1. Domain for 2f3i:
    2. Domains for 3bju:
      1. 1789792Domain d3bjua1: 3bju A:70-221 [208647]
        Other proteins in same PDB: d3bjua2, d3bjub2, d3bjuc2, d3bjud2
        automated match to d1bbua1
        complexed with atp, ca, lys
      2. 1789793Domain d3bjub1: 3bju B:72-214 [208649]
        Other proteins in same PDB: d3bjua2, d3bjub2, d3bjuc2, d3bjud2
        automated match to d1bbua1
        complexed with atp, ca, lys
      3. 1789794Domain d3bjuc1: 3bju C:72-221 [208651]
        Other proteins in same PDB: d3bjua2, d3bjub2, d3bjuc2, d3bjud2
        automated match to d1bbua1
        complexed with atp, ca, lys
      4. 1789795Domain d3bjud1: 3bju D:71-221 [208653]
        Other proteins in same PDB: d3bjua2, d3bjub2, d3bjuc2, d3bjud2
        automated match to d1bbua1
        complexed with atp, ca, lys
    3. Domains for 3cpf:
      1. 1789806Domain d3cpfa2: 3cpf A:84-150 [231890]
        Other proteins in same PDB: d3cpfa1, d3cpfb1
        automated match to d3hksa2
        complexed with unx
      2. 1789807Domain d3cpfb2: 3cpf B:84-151 [231892]
        Other proteins in same PDB: d3cpfa1, d3cpfb1
        automated match to d3hksa2
        complexed with unx
    4. Domains for 4a4i:
      1. 1789788Domain d4a4ia_: 4a4i A: [234027]
        automated match to d3i2za_
        complexed with gol, so4
      2. 1789789Domain d4a4ib_: 4a4i B: [234028]
        automated match to d3i2za_
        complexed with gol, so4
    5. Domains for 4dpg:
      1. 1789798Domain d4dpga1: 4dpg A:71-221 [219905]
        Other proteins in same PDB: d4dpga2, d4dpgb2, d4dpgc2, d4dpgd2, d4dpge2, d4dpgf2, d4dpgg2, d4dpgh2
        automated match to d1bbua1
        protein/RNA complex; complexed with ala, apc, lys, mg
      2. 1789799Domain d4dpgb1: 4dpg B:71-221 [219907]
        Other proteins in same PDB: d4dpga2, d4dpgb2, d4dpgc2, d4dpgd2, d4dpge2, d4dpgf2, d4dpgg2, d4dpgh2
        automated match to d1bbua1
        protein/RNA complex; complexed with ala, apc, lys, mg
      3. 1789800Domain d4dpgc1: 4dpg C:71-221 [219909]
        Other proteins in same PDB: d4dpga2, d4dpgb2, d4dpgc2, d4dpgd2, d4dpge2, d4dpgf2, d4dpgg2, d4dpgh2
        automated match to d1bbua1
        protein/RNA complex; complexed with ala, apc, lys, mg
      4. 1789801Domain d4dpgd1: 4dpg D:71-221 [219911]
        Other proteins in same PDB: d4dpga2, d4dpgb2, d4dpgc2, d4dpgd2, d4dpge2, d4dpgf2, d4dpgg2, d4dpgh2
        automated match to d1bbua1
        protein/RNA complex; complexed with ala, apc, lys, mg
      5. 1789802Domain d4dpge1: 4dpg E:72-221 [219913]
        Other proteins in same PDB: d4dpga2, d4dpgb2, d4dpgc2, d4dpgd2, d4dpge2, d4dpgf2, d4dpgg2, d4dpgh2
        automated match to d1bbua1
        protein/RNA complex; complexed with ala, apc, lys, mg
      6. 1789803Domain d4dpgf1: 4dpg F:71-221 [219915]
        Other proteins in same PDB: d4dpga2, d4dpgb2, d4dpgc2, d4dpgd2, d4dpge2, d4dpgf2, d4dpgg2, d4dpgh2
        automated match to d1bbua1
        protein/RNA complex; complexed with ala, apc, lys, mg
      7. 1789804Domain d4dpgg1: 4dpg G:72-221 [219917]
        Other proteins in same PDB: d4dpga2, d4dpgb2, d4dpgc2, d4dpgd2, d4dpge2, d4dpgf2, d4dpgg2, d4dpgh2
        automated match to d1bbua1
        protein/RNA complex; complexed with ala, apc, lys, mg
      8. 1789805Domain d4dpgh1: 4dpg H:71-221 [219919]
        Other proteins in same PDB: d4dpga2, d4dpgb2, d4dpgc2, d4dpgd2, d4dpge2, d4dpgf2, d4dpgg2, d4dpgh2
        automated match to d1bbua1
        protein/RNA complex; complexed with ala, apc, lys, mg
    6. Domains for 4j15:
      1. 1789790Domain d4j15a1: 4j15 A:21-152 [223509]
        Other proteins in same PDB: d4j15a2, d4j15b2
        automated match to d1asza1
        protein/RNA complex; complexed with gol
      2. 1789791Domain d4j15b1: 4j15 B:21-152 [223511]
        Other proteins in same PDB: d4j15a2, d4j15b2
        automated match to d1asza1
        protein/RNA complex; complexed with gol
    7. Domains for 4ycu:
      1. 1789796Domain d4ycua1: 4ycu A:72-221 [273828]
        Other proteins in same PDB: d4ycua2, d4ycub2
        automated match to d3bjua1
        protein/RNA complex; complexed with gol, krs, lys
      2. 1789797Domain d4ycub1: 4ycu B:72-216 [273830]
        Other proteins in same PDB: d4ycua2, d4ycub2
        automated match to d3bjua1
        protein/RNA complex; complexed with gol, krs, lys
    8. Domains for 4ycw:
      1. 1789808Domain d4ycwa1: 4ycw A:72-221 [273822]
        Other proteins in same PDB: d4ycwa2, d4ycwb2, d4ycwe2, d4ycwf2
        automated match to d3bjua1
        protein/RNA complex; complexed with krs, lys; mutant
      2. 1789809Domain d4ycwb1: 4ycw B:72-221 [273824]
        Other proteins in same PDB: d4ycwa2, d4ycwb2, d4ycwe2, d4ycwf2
        automated match to d3bjua1
        protein/RNA complex; complexed with krs, lys; mutant
      3. 1789810Domain d4ycwe1: 4ycw E:72-216 [273826]
        Other proteins in same PDB: d4ycwa2, d4ycwb2, d4ycwe2, d4ycwf2
        automated match to d3bjua1
        protein/RNA complex; complexed with krs, lys; mutant
      4. 1789811Domain d4ycwf1: 4ycw F:72-216 [273820]
        Other proteins in same PDB: d4ycwa2, d4ycwb2, d4ycwe2, d4ycwf2
        automated match to d3bjua1
        protein/RNA complex; complexed with krs, lys; mutant
  11. 1789813Plasmodium falciparum [TaxId:36329] [234564] (2 PDB entries)
    1. Domains for 4h02:
      1. 1789818Domain d4h02a1: 4h02 A:80-228 [234565]
        Other proteins in same PDB: d4h02a2, d4h02b2, d4h02c2, d4h02d2, d4h02e2, d4h02f2, d4h02g2, d4h02h2
        automated match to d3bjua1
      2. 1789819Domain d4h02b1: 4h02 B:80-228 [234566]
        Other proteins in same PDB: d4h02a2, d4h02b2, d4h02c2, d4h02d2, d4h02e2, d4h02f2, d4h02g2, d4h02h2
        automated match to d3bjua1
      3. 1789820Domain d4h02c1: 4h02 C:80-228 [234570]
        Other proteins in same PDB: d4h02a2, d4h02b2, d4h02c2, d4h02d2, d4h02e2, d4h02f2, d4h02g2, d4h02h2
        automated match to d3bjua1
      4. 1789821Domain d4h02d1: 4h02 D:80-228 [234571]
        Other proteins in same PDB: d4h02a2, d4h02b2, d4h02c2, d4h02d2, d4h02e2, d4h02f2, d4h02g2, d4h02h2
        automated match to d3bjua1
      5. 1789822Domain d4h02e1: 4h02 E:80-228 [234572]
        Other proteins in same PDB: d4h02a2, d4h02b2, d4h02c2, d4h02d2, d4h02e2, d4h02f2, d4h02g2, d4h02h2
        automated match to d3bjua1
      6. 1789823Domain d4h02f1: 4h02 F:80-228 [234574]
        Other proteins in same PDB: d4h02a2, d4h02b2, d4h02c2, d4h02d2, d4h02e2, d4h02f2, d4h02g2, d4h02h2
        automated match to d3bjua1
      7. 1789824Domain d4h02g1: 4h02 G:80-228 [234573]
        Other proteins in same PDB: d4h02a2, d4h02b2, d4h02c2, d4h02d2, d4h02e2, d4h02f2, d4h02g2, d4h02h2
        automated match to d3bjua1
      8. 1789825Domain d4h02h1: 4h02 H:80-228 [234575]
        Other proteins in same PDB: d4h02a2, d4h02b2, d4h02c2, d4h02d2, d4h02e2, d4h02f2, d4h02g2, d4h02h2
        automated match to d3bjua1
    2. Domains for 4pg3:
      1. 1789814Domain d4pg3a1: 4pg3 A:80-227 [258136]
        Other proteins in same PDB: d4pg3a2, d4pg3b2, d4pg3c2, d4pg3d2
        automated match to d3bjua1
        complexed with krs, lys
      2. 1789815Domain d4pg3b1: 4pg3 B:80-228 [263476]
        Other proteins in same PDB: d4pg3a2, d4pg3b2, d4pg3c2, d4pg3d2
        automated match to d3bjua1
        complexed with krs, lys
      3. 1789816Domain d4pg3c1: 4pg3 C:80-228 [263478]
        Other proteins in same PDB: d4pg3a2, d4pg3b2, d4pg3c2, d4pg3d2
        automated match to d3bjua1
        complexed with krs, lys
      4. 1789817Domain d4pg3d1: 4pg3 D:80-227 [258134]
        Other proteins in same PDB: d4pg3a2, d4pg3b2, d4pg3c2, d4pg3d2
        automated match to d3bjua1
        complexed with krs, lys
  12. 1789826Pyrococcus furiosus [TaxId:186497] [238494] (1 PDB entry)
  13. 1789833Pyrococcus horikoshii [TaxId:53953] [187575] (4 PDB entries)
    1. Domain for 1x54:
    2. Domain for 1x55:
    3. Domain for 1x56:
    4. Domain for 2cwp:
  14. 1789838Rickettsia rickettsii [TaxId:392021] [255459] (1 PDB entry)
  15. 1789840Streptomyces coelicolor [TaxId:1902] [196757] (1 PDB entry)
  16. 1789853Sulfolobus solfataricus [TaxId:2287] [188424] (3 PDB entries)
    1. Domain for 2jeb:
    2. Domains for 2vl6:
      1. 1789857Domain d2vl6a_: 2vl6 A: [168676]
        automated match to d1ltle_
        complexed with zn
      2. 1789858Domain d2vl6b_: 2vl6 B: [168677]
        automated match to d1ltle_
        complexed with zn
      3. 1789859Domain d2vl6c_: 2vl6 C: [168678]
        automated match to d1ltle_
        complexed with zn
    3. Domains for 3l7z:
      1. 1789855Domain d3l7zc2: 3l7z C:66-152 [239407]
        Other proteins in same PDB: d3l7za1, d3l7za2, d3l7zc1, d3l7zc3, d3l7zd1, d3l7zd2, d3l7zg1, d3l7zg2, d3l7zi1, d3l7zi3
        automated match to d2je6i1
        protein/RNA complex; complexed with so4
      2. 1789856Domain d3l7zi2: 3l7z I:66-152 [239410]
        Other proteins in same PDB: d3l7za1, d3l7za2, d3l7zc1, d3l7zc3, d3l7zd1, d3l7zd2, d3l7zg1, d3l7zg2, d3l7zi1, d3l7zi3
        automated match to d2je6i1
        protein/RNA complex; complexed with so4
  17. 1789860Sulfolobus tokodaii [TaxId:273063] [230388] (1 PDB entry)
  18. 1789863Thale cress (Arabidopsis thaliana) [TaxId:3702] [225760] (1 PDB entry)
  19. 1789866Thermococcus kodakarensis [TaxId:311400] [225945] (3 PDB entries)
    1. Domains for 3nel:
      1. 1789869Domain d3nela1: 3nel A:1-102 [213895]
        Other proteins in same PDB: d3nela2, d3nelb2
        automated match to d1c0aa1
        protein/RNA complex; complexed with asp
      2. 1789870Domain d3nelb1: 3nel B:1-102 [213897]
        Other proteins in same PDB: d3nela2, d3nelb2
        automated match to d1c0aa1
        protein/RNA complex; complexed with asp
    2. Domains for 3nem:
      1. 1789867Domain d3nema1: 3nem A:1-102 [213899]
        Other proteins in same PDB: d3nema2, d3nemb2
        automated match to d1c0aa1
        protein/RNA complex; complexed with amo, atp, mg
      2. 1789868Domain d3nemb1: 3nem B:1-102 [213901]
        Other proteins in same PDB: d3nema2, d3nemb2
        automated match to d1c0aa1
        protein/RNA complex; complexed with amo, atp, mg
    3. Domains for 3nen:
      1. 1789871Domain d3nena1: 3nen A:1-102 [213903]
        Other proteins in same PDB: d3nena2, d3nenb2
        automated match to d1c0aa1
      2. 1789872Domain d3nenb1: 3nen B:1-102 [213905]
        Other proteins in same PDB: d3nena2, d3nenb2
        automated match to d1c0aa1
  20. 1789873Thermotoga maritima [TaxId:2336] [225895] (2 PDB entries)
    1. Domain for 1z9f:
    2. Domain for 3l0o:
  21. 1789876Thermus aquaticus [TaxId:271] [187860] (3 PDB entries)
    1. Domain for 2fxq:
    2. Domain for 2ihe:
    3. Domain for 2ihf:
  22. 1789880Thermus thermophilus HB8 [TaxId:300852] [230627] (1 PDB entry)
  23. 1789882Xenopus (Silurana) tropicalis [TaxId:8364] [256121] (3 PDB entries)
    1. Domains for 3ulj:
      1. 1789883Domain d3ulja_: 3ulj A: [250239]
        automated match to d4a4ib_
        complexed with act, gol
      2. 1789884Domain d3uljb_: 3ulj B: [250240]
        automated match to d4a4ib_
        complexed with act, gol
    2. Domains for 4a75:
      1. 1789885Domain d4a75a_: 4a75 A: [250963]
        automated match to d4a4ib_
        protein/DNA complex; protein/RNA complex; complexed with scn
      2. 1789886Domain d4a75c_: 4a75 C: [250964]
        automated match to d4a4ib_
        protein/DNA complex; protein/RNA complex; complexed with scn
      3. 1789887Domain d4a75e_: 4a75 E: [250965]
        automated match to d4a4ib_
        protein/DNA complex; protein/RNA complex; complexed with scn
      4. 1789888Domain d4a75g_: 4a75 G: [250966]
        automated match to d4a4ib_
        protein/DNA complex; protein/RNA complex; complexed with scn
    3. Domains for 4a76:
      1. 1789889Domain d4a76a_: 4a76 A: [250967]
        automated match to d4a4ib_
        protein/DNA complex
      2. 1789890Domain d4a76c_: 4a76 C: [250968]
        automated match to d4a4ib_
        protein/DNA complex
      3. 1789891Domain d4a76e_: 4a76 E: [250969]
        automated match to d4a4ib_
        protein/DNA complex
      4. 1789892Domain d4a76g_: 4a76 G: [250970]
        automated match to d4a4ib_
        protein/DNA complex

More info for Protein automated matches from b.40.4.0: automated matches

Timeline for Protein automated matches from b.40.4.0: automated matches: