SCOPe 2.04: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.04
Class b: All beta proteins [48724] (176 folds)
Fold b.40: OB-fold [50198] (16 superfamilies)
barrel, closed or partly opened n=5, S=10 or S=8; greek-key
Superfamily b.40.4: Nucleic acid-binding proteins [50249] (17 families)
Family b.40.4.0: automated matches [191416] (1 protein)
not a true family
Protein automated matches [190576] (22 species)
not a true protein

Species:

Agrobacterium tumefaciens [TaxId:176299] [188408] (2 PDB entries)
1. Domains for 2q2h:
  1. Domain d2q2ha_: 2q2h A: [198268]
    automated match to d2q2hb_
    complexed with act, cit
  2. Domain d2q2hb_: 2q2h B: [195196]
    automated match to d2q2ia_
    complexed with act, cit
2. Domains for 2q2i:
  1. Domain d2q2ia_: 2q2i A: [167395]
    automated match to d1gd7a_
    complexed with edo, so4
  2. Domain d2q2ib_: 2q2i B: [167396]
    automated match to d1gd7a_
    complexed with edo, so4
Bacillus stearothermophilus [TaxId:1422] [225706] (2 PDB entries)
1. Domains for 3e9h:
  1. Domain d3e9ha1: 3e9h A:4-145 [209425]
    Other proteins in same PDB: d3e9ha2, d3e9hb2, d3e9hc2, d3e9hd2
    automated match to d1bbua1
    protein/RNA complex; complexed with kaa, mg
  2. Domain d3e9hb1: 3e9h B:4-145 [209427]
    Other proteins in same PDB: d3e9ha2, d3e9hb2, d3e9hc2, d3e9hd2
    automated match to d1bbua1
    protein/RNA complex; complexed with kaa, mg
  3. Domain d3e9hc1: 3e9h C:4-145 [209429]
    Other proteins in same PDB: d3e9ha2, d3e9hb2, d3e9hc2, d3e9hd2
    automated match to d1bbua1
    protein/RNA complex; complexed with kaa, mg
  4. Domain d3e9hd1: 3e9h D:4-145 [209431]
    Other proteins in same PDB: d3e9ha2, d3e9hb2, d3e9hc2, d3e9hd2
    automated match to d1bbua1
    protein/RNA complex; complexed with kaa, mg
2. Domains for 3e9i:
  1. Domain d3e9ia1: 3e9i A:4-145 [209433]
    Other proteins in same PDB: d3e9ia2, d3e9ib2, d3e9ic2, d3e9id2
    automated match to d1bbua1
    protein/RNA complex; complexed with 1pe, mg, xah
  2. Domain d3e9ib1: 3e9i B:4-145 [209435]
    Other proteins in same PDB: d3e9ia2, d3e9ib2, d3e9ic2, d3e9id2
    automated match to d1bbua1
    protein/RNA complex; complexed with 1pe, mg, xah
  3. Domain d3e9ic1: 3e9i C:4-145 [209437]
    Other proteins in same PDB: d3e9ia2, d3e9ib2, d3e9ic2, d3e9id2
    automated match to d1bbua1
    protein/RNA complex; complexed with 1pe, mg, xah
  4. Domain d3e9id1: 3e9i D:4-145 [209439]
    Other proteins in same PDB: d3e9ia2, d3e9ib2, d3e9ic2, d3e9id2
    automated match to d1bbua1
    protein/RNA complex; complexed with 1pe, mg, xah
Bacillus subtilis [TaxId:1423] [187937] (2 PDB entries)
1. Domains for 2nzh:
  1. Domain d2nzha_: 2nzh A: [166469]
    automated match to d1gd7a_
    complexed with gol
  2. Domain d2nzhb_: 2nzh B: [166470]
    automated match to d1gd7a_
    complexed with gol
2. Domains for 2nzo:
  1. Domain d2nzoa_: 2nzo A: [166476]
    automated match to d1gd7a_
    complexed with gol
  2. Domain d2nzob_: 2nzo B: [166477]
    automated match to d1gd7a_
    complexed with gol
  3. Domain d2nzoc_: 2nzo C: [166478]
    automated match to d1gd7a_
    complexed with gol
  4. Domain d2nzod_: 2nzo D: [166479]
    automated match to d1gd7a_
    complexed with gol
Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [225013] (2 PDB entries)
1. Domain for 2a19:
  - Domain d2a19a1: 2a19 A:2-88 [197723]
    Other proteins in same PDB: d2a19a2, d2a19b_, d2a19c_
    automated match to d1kl9a2
    complexed with anp, mg, po4
2. Domain for 2a1a:
  - Domain d2a1aa1: 2a1a A:3-88 [197725]
    Other proteins in same PDB: d2a1aa2, d2a1ab_
    automated match to d1kl9a2
Bartonella henselae [TaxId:38323] [255930] (2 PDB entries)
1. Domains for 3lgj:
  1. Domain d3lgja_: 3lgj A: [247462]
    automated match to d1eqqb_
    complexed with ca
  2. Domain d3lgjb_: 3lgj B: [247463]
    automated match to d1eqqb_
    complexed with ca
2. Domains for 3pgz:
  1. Domain d3pgza_: 3pgz A: [248495]
    automated match to d1eqqb_
    complexed with unx
  2. Domain d3pgzb_: 3pgz B: [248496]
    automated match to d1eqqb_
    complexed with unx
Coxiella burnetii [TaxId:777] [233711] (2 PDB entries)
1. Domains for 3tqy:
  1. Domain d3tqya_: 3tqy A: [249990]
    automated match to d3ullb_
  2. Domain d3tqyb_: 3tqy B: [249991]
    automated match to d3ullb_
  3. Domain d3tqyc_: 3tqy C: [249992]
    automated match to d3ullb_
  4. Domain d3tqyd_: 3tqy D: [249993]
    automated match to d3ullb_
2. Domain for 3tre:
  - Domain d3trea2: 3tre A:66-131 [233712]
    Other proteins in same PDB: d3trea1
    automated match to d1ueba2
Escherichia coli [TaxId:562] [255345] (2 PDB entries)
1. Domain for 2khj:
  - Domain d2khja_: 2khj A: [242512]
    automated match to d1sroa_
2. Domain for 3a5z:
  - Domain d3a5zb2: 3a5z B:66-136 [245061]
    Other proteins in same PDB: d3a5zb1
    automated match to d3trea2
    protein/RNA complex; complexed with kaa
Helicobacter pylori [TaxId:85962] [225690] (1 PDB entry)
- Domains for 2vw9:
  1. Domain d2vw9a_: 2vw9 A: [206500]
    automated match to d1s3ob_
    protein/DNA complex
  2. Domain d2vw9b_: 2vw9 B: [206501]
    automated match to d1s3ob_
    protein/DNA complex

Human (Homo sapiens) [TaxId:9606] [225402] (6 PDB entries)

Domain for 2f3i:
- Domain d2f3ia_: 2f3i A: [241805]
  automated match to d1twfh_
Domains for 3bju:
1. Domain d3bjua1: 3bju A:70-221 [208647]
  Other proteins in same PDB: d3bjua2, d3bjub2, d3bjuc2, d3bjud2
  automated match to d1bbua1
  complexed with atp, ca, lys
2. Domain d3bjub1: 3bju B:72-214 [208649]
  Other proteins in same PDB: d3bjua2, d3bjub2, d3bjuc2, d3bjud2
  automated match to d1bbua1
  complexed with atp, ca, lys
3. Domain d3bjuc1: 3bju C:72-221 [208651]
  Other proteins in same PDB: d3bjua2, d3bjub2, d3bjuc2, d3bjud2
  automated match to d1bbua1
  complexed with atp, ca, lys
4. Domain d3bjud1: 3bju D:71-221 [208653]
  Other proteins in same PDB: d3bjua2, d3bjub2, d3bjuc2, d3bjud2
  automated match to d1bbua1
  complexed with atp, ca, lys
Domains for 3cpf:
1. Domain d3cpfa2: 3cpf A:84-150 [231890]
  Other proteins in same PDB: d3cpfa1, d3cpfb1
  automated match to d3hksa2
  complexed with unx
2. Domain d3cpfb2: 3cpf B:84-151 [231892]
  Other proteins in same PDB: d3cpfa1, d3cpfb1
  automated match to d3hksa2
  complexed with unx
Domains for 4a4i:
1. Domain d4a4ia_: 4a4i A: [234027]
  automated match to d3i2za_
  complexed with gol, so4
2. Domain d4a4ib_: 4a4i B: [234028]
  automated match to d3i2za_
  complexed with gol, so4

Domains for 4dpg:

Domain d4dpga1: 4dpg A:71-221 [219905]
Other proteins in same PDB: d4dpga2, d4dpgb2, d4dpgc2, d4dpgd2, d4dpge2, d4dpgf2, d4dpgg2, d4dpgh2
automated match to d1bbua1
protein/RNA complex; complexed with ala, apc, lys, mg

Domain d4dpgb1: 4dpg B:71-221 [219907]
Other proteins in same PDB: d4dpga2, d4dpgb2, d4dpgc2, d4dpgd2, d4dpge2, d4dpgf2, d4dpgg2, d4dpgh2
automated match to d1bbua1
protein/RNA complex; complexed with ala, apc, lys, mg

Domain d4dpgc1: 4dpg C:71-221 [219909]
Other proteins in same PDB: d4dpga2, d4dpgb2, d4dpgc2, d4dpgd2, d4dpge2, d4dpgf2, d4dpgg2, d4dpgh2
automated match to d1bbua1
protein/RNA complex; complexed with ala, apc, lys, mg

Domain d4dpgd1: 4dpg D:71-221 [219911]
Other proteins in same PDB: d4dpga2, d4dpgb2, d4dpgc2, d4dpgd2, d4dpge2, d4dpgf2, d4dpgg2, d4dpgh2
automated match to d1bbua1
protein/RNA complex; complexed with ala, apc, lys, mg

Domain d4dpge1: 4dpg E:72-221 [219913]
Other proteins in same PDB: d4dpga2, d4dpgb2, d4dpgc2, d4dpgd2, d4dpge2, d4dpgf2, d4dpgg2, d4dpgh2
automated match to d1bbua1
protein/RNA complex; complexed with ala, apc, lys, mg

Domain d4dpgf1: 4dpg F:71-221 [219915]
Other proteins in same PDB: d4dpga2, d4dpgb2, d4dpgc2, d4dpgd2, d4dpge2, d4dpgf2, d4dpgg2, d4dpgh2
automated match to d1bbua1
protein/RNA complex; complexed with ala, apc, lys, mg

Domain d4dpgg1: 4dpg G:72-221 [219917]
Other proteins in same PDB: d4dpga2, d4dpgb2, d4dpgc2, d4dpgd2, d4dpge2, d4dpgf2, d4dpgg2, d4dpgh2
automated match to d1bbua1
protein/RNA complex; complexed with ala, apc, lys, mg

Domain d4dpgh1: 4dpg H:71-221 [219919]
Other proteins in same PDB: d4dpga2, d4dpgb2, d4dpgc2, d4dpgd2, d4dpge2, d4dpgf2, d4dpgg2, d4dpgh2
automated match to d1bbua1
protein/RNA complex; complexed with ala, apc, lys, mg

Domains for 4j15:
1. Domain d4j15a1: 4j15 A:21-152 [223509]
  Other proteins in same PDB: d4j15a2, d4j15b2
  automated match to d1asza1
  protein/RNA complex; complexed with gol
2. Domain d4j15b1: 4j15 B:21-152 [223511]
  Other proteins in same PDB: d4j15a2, d4j15b2
  automated match to d1asza1
  protein/RNA complex; complexed with gol

Plasmodium falciparum [TaxId:36329] [234564] (2 PDB entries)
1. Domains for 4h02:
  1. Domain d4h02a1: 4h02 A:80-228 [234565]
    Other proteins in same PDB: d4h02a2, d4h02b2, d4h02c2, d4h02d2, d4h02e2, d4h02f2, d4h02g2, d4h02h2
    automated match to d3bjua1
  2. Domain d4h02b1: 4h02 B:80-228 [234566]
    Other proteins in same PDB: d4h02a2, d4h02b2, d4h02c2, d4h02d2, d4h02e2, d4h02f2, d4h02g2, d4h02h2
    automated match to d3bjua1
  3. Domain d4h02c1: 4h02 C:80-228 [234570]
    Other proteins in same PDB: d4h02a2, d4h02b2, d4h02c2, d4h02d2, d4h02e2, d4h02f2, d4h02g2, d4h02h2
    automated match to d3bjua1
  4. Domain d4h02d1: 4h02 D:80-228 [234571]
    Other proteins in same PDB: d4h02a2, d4h02b2, d4h02c2, d4h02d2, d4h02e2, d4h02f2, d4h02g2, d4h02h2
    automated match to d3bjua1
  5. Domain d4h02e1: 4h02 E:80-228 [234572]
    Other proteins in same PDB: d4h02a2, d4h02b2, d4h02c2, d4h02d2, d4h02e2, d4h02f2, d4h02g2, d4h02h2
    automated match to d3bjua1
  6. Domain d4h02f1: 4h02 F:80-228 [234574]
    Other proteins in same PDB: d4h02a2, d4h02b2, d4h02c2, d4h02d2, d4h02e2, d4h02f2, d4h02g2, d4h02h2
    automated match to d3bjua1
  7. Domain d4h02g1: 4h02 G:80-228 [234573]
    Other proteins in same PDB: d4h02a2, d4h02b2, d4h02c2, d4h02d2, d4h02e2, d4h02f2, d4h02g2, d4h02h2
    automated match to d3bjua1
  8. Domain d4h02h1: 4h02 H:80-228 [234575]
    Other proteins in same PDB: d4h02a2, d4h02b2, d4h02c2, d4h02d2, d4h02e2, d4h02f2, d4h02g2, d4h02h2
    automated match to d3bjua1
2. Domains for 4pg3:
  1. Domain d4pg3a1: 4pg3 A:80-227 [258136]
    Other proteins in same PDB: d4pg3a2, d4pg3d2
    automated match to d3bjua1
    complexed with krs, lys
  2. Domain d4pg3d1: 4pg3 D:80-227 [258134]
    Other proteins in same PDB: d4pg3a2, d4pg3d2
    automated match to d3bjua1
    complexed with krs, lys
Pyrococcus furiosus [TaxId:186497] [238494] (1 PDB entry)
- Domains for 4pof:
  1. Domain d4pofa_: 4pof A: [238496]
    automated match to d2vl6a_
    complexed with zn
  2. Domain d4pofb_: 4pof B: [238497]
    automated match to d2vl6a_
    complexed with zn
  3. Domain d4pofc_: 4pof C: [240729]
    automated match to d4pofb_
    complexed with zn
  4. Domain d4pofd_: 4pof D: [240730]
    automated match to d4pofb_
    complexed with zn
  5. Domain d4pofe_: 4pof E: [240731]
    automated match to d4pofb_
    complexed with zn
  6. Domain d4poff_: 4pof F: [240732]
    automated match to d4pofb_
    complexed with zn
Pyrococcus horikoshii [TaxId:53953] [187575] (4 PDB entries)
1. Domain for 1x54:
  - Domain d1x54a1: 1x54 A:1-104 [230394]
    Other proteins in same PDB: d1x54a2
    automated match to d1b8aa1
    protein/RNA complex; complexed with 4ad, mg, mpd
2. Domain for 1x55:
  - Domain d1x55a1: 1x55 A:1-104 [230397]
    Other proteins in same PDB: d1x55a2
    automated match to d1b8aa1
    protein/RNA complex; complexed with mg, nss, po4
3. Domain for 1x56:
  - Domain d1x56a1: 1x56 A:1-104 [230399]
    Other proteins in same PDB: d1x56a2
    automated match to d1b8aa1
4. Domain for 2cwp:
  - Domain d2cwpa_: 2cwp A: [163483]
    automated match to d1pyba_
Rickettsia rickettsii [TaxId:392021] [255459] (1 PDB entry)
- Domain for 2lss:
  - Domain d2lssa_: 2lss A: [242989]
    automated match to d3cama_
Streptomyces coelicolor [TaxId:1902] [196757] (1 PDB entry)
- Domains for 4dam:
  1. Domain d4dama_: 4dam A: [196758]
    automated match to d3a5ua_
  2. Domain d4damb_: 4dam B: [196759]
    automated match to d3a5ua_
  3. Domain d4damc_: 4dam C: [196760]
    automated match to d3a5ua_
  4. Domain d4damd_: 4dam D: [196762]
    automated match to d3a5ua_
  5. Domain d4dame_: 4dam E: [196761]
    automated match to d3a5ua_
  6. Domain d4damf_: 4dam F: [201654]
    automated match to d4dama_
  7. Domain d4damg_: 4dam G: [201655]
    automated match to d4dama_
  8. Domain d4damh_: 4dam H: [201656]
    automated match to d4dama_
  9. Domain d4dami_: 4dam I: [201657]
    automated match to d4dama_
  10. Domain d4damj_: 4dam J: [201658]
    automated match to d4dama_
  11. Domain d4damk_: 4dam K: [201659]
    automated match to d4dama_
  12. Domain d4daml_: 4dam L: [201660]
    automated match to d4dama_

Sulfolobus solfataricus [TaxId:2287] [188424] (3 PDB entries)

Domain for 2jeb:
- Domain d2jebi2: 2jeb I:66-152 [238703]
  Other proteins in same PDB: d2jeba1, d2jeba2, d2jebb1, d2jebb2, d2jebi1
  automated match to d2je6i1
  complexed with 1pe, cl, mn
Domains for 2vl6:
1. Domain d2vl6a_: 2vl6 A: [168676]
  automated match to d1ltle_
  complexed with zn
2. Domain d2vl6b_: 2vl6 B: [168677]
  automated match to d1ltle_
  complexed with zn
3. Domain d2vl6c_: 2vl6 C: [168678]
  automated match to d1ltle_
  complexed with zn

Domains for 3l7z:

Domain d3l7zc2: 3l7z C:66-152 [239407]
Other proteins in same PDB: d3l7za1, d3l7za2, d3l7zc1, d3l7zc3, d3l7zd1, d3l7zd2, d3l7zg1, d3l7zg2, d3l7zi1, d3l7zi3
automated match to d2je6i1
protein/RNA complex; complexed with so4

Domain d3l7zi2: 3l7z I:66-152 [239410]
Other proteins in same PDB: d3l7za1, d3l7za2, d3l7zc1, d3l7zc3, d3l7zd1, d3l7zd2, d3l7zg1, d3l7zg2, d3l7zi1, d3l7zi3
automated match to d2je6i1
protein/RNA complex; complexed with so4

Sulfolobus tokodaii [TaxId:273063] [230388] (1 PDB entry)
- Domains for 1wyd:
  1. Domain d1wyda1: 1wyd A:1-100 [230389]
    Other proteins in same PDB: d1wyda2, d1wydb2
    automated match to d1b8aa1
    complexed with cl, epe, so4
  2. Domain d1wydb1: 1wyd B:1-100 [230392]
    Other proteins in same PDB: d1wyda2, d1wydb2
    automated match to d1b8aa1
    complexed with cl, epe, so4
Thale cress (Arabidopsis thaliana) [TaxId:3702] [225760] (1 PDB entry)
- Domains for 3hks:
  1. Domain d3hksa2: 3hks A:85-159 [211116]
    Other proteins in same PDB: d3hksa1, d3hksb1
    automated match to d1xtda2
    complexed with edo
  2. Domain d3hksb2: 3hks B:85-157 [211118]
    Other proteins in same PDB: d3hksa1, d3hksb1
    automated match to d1xtda2
    complexed with edo
Thermococcus kodakarensis [TaxId:311400] [225945] (3 PDB entries)
1. Domains for 3nel:
  1. Domain d3nela1: 3nel A:1-102 [213895]
    Other proteins in same PDB: d3nela2, d3nelb2
    automated match to d1c0aa1
    protein/RNA complex; complexed with asp
  2. Domain d3nelb1: 3nel B:1-102 [213897]
    Other proteins in same PDB: d3nela2, d3nelb2
    automated match to d1c0aa1
    protein/RNA complex; complexed with asp
2. Domains for 3nem:
  1. Domain d3nema1: 3nem A:1-102 [213899]
    Other proteins in same PDB: d3nema2, d3nemb2
    automated match to d1c0aa1
    protein/RNA complex; complexed with amo, atp, mg
  2. Domain d3nemb1: 3nem B:1-102 [213901]
    Other proteins in same PDB: d3nema2, d3nemb2
    automated match to d1c0aa1
    protein/RNA complex; complexed with amo, atp, mg
3. Domains for 3nen:
  1. Domain d3nena1: 3nen A:1-102 [213903]
    Other proteins in same PDB: d3nena2, d3nenb2
    automated match to d1c0aa1
  2. Domain d3nenb1: 3nen B:1-102 [213905]
    Other proteins in same PDB: d3nena2, d3nenb2
    automated match to d1c0aa1
Thermotoga maritima [TaxId:2336] [225895] (2 PDB entries)
1. Domain for 1z9f:
  - Domain d1z9fa_: 1z9f A: [241124]
    automated match to d2vw9a_
2. Domain for 3l0o:
  - Domain d3l0ob1: 3l0o B:58-130 [212639]
    Other proteins in same PDB: d3l0ob2
    automated match to d1xpoa2
    complexed with ium, na, so4
Thermus aquaticus [TaxId:271] [187860] (3 PDB entries)
1. Domain for 2fxq:
  - Domain d2fxqa_: 2fxq A: [204272]
    automated match to d2ihea_
2. Domain for 2ihe:
  - Domain d2ihea_: 2ihe A: [193209]
    automated match to d2ihfa_
3. Domain for 2ihf:
  - Domain d2ihfa_: 2ihf A: [165548]
    automated match to d1se8a_
    mutant
Thermus thermophilus HB8 [TaxId:300852] [230627] (1 PDB entry)
- Domain for 2cwa:
  - Domain d2cwaa_: 2cwa A: [230628]
    automated match to d2ihea_
    complexed with no3
Xenopus (Silurana) tropicalis [TaxId:8364] [256121] (3 PDB entries)
1. Domains for 3ulj:
  1. Domain d3ulja_: 3ulj A: [250239]
    automated match to d4a4ib_
    complexed with act, gol
  2. Domain d3uljb_: 3ulj B: [250240]
    automated match to d4a4ib_
    complexed with act, gol
2. Domains for 4a75:
  1. Domain d4a75a_: 4a75 A: [250963]
    automated match to d4a4ib_
    protein/DNA complex; protein/RNA complex; complexed with scn
  2. Domain d4a75c_: 4a75 C: [250964]
    automated match to d4a4ib_
    protein/DNA complex; protein/RNA complex; complexed with scn
  3. Domain d4a75e_: 4a75 E: [250965]
    automated match to d4a4ib_
    protein/DNA complex; protein/RNA complex; complexed with scn
  4. Domain d4a75g_: 4a75 G: [250966]
    automated match to d4a4ib_
    protein/DNA complex; protein/RNA complex; complexed with scn
3. Domains for 4a76:
  1. Domain d4a76a_: 4a76 A: [250967]
    automated match to d4a4ib_
    protein/DNA complex
  2. Domain d4a76c_: 4a76 C: [250968]
    automated match to d4a4ib_
    protein/DNA complex
  3. Domain d4a76e_: 4a76 E: [250969]
    automated match to d4a4ib_
    protein/DNA complex
  4. Domain d4a76g_: 4a76 G: [250970]
    automated match to d4a4ib_
    protein/DNA complex

More info for Protein automated matches from b.40.4.0: automated matches

Timeline for Protein automated matches from b.40.4.0: automated matches:

Protein automated matches from b.40.4.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from b.40.4.0: automated matches appears in SCOPe 2.03
Protein automated matches from b.40.4.0: automated matches appears in SCOPe 2.05
Protein automated matches from b.40.4.0: automated matches appears in the current release, SCOPe 2.08