Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 3008871Fold d.254: Nucleocapsid protein dimerization domain [103067] (1 superfamily)
    dimer of alpha-beta(2)-alpha motifs ; 2 layers, alpha/beta
  4. 3008872Superfamily d.254.1: Nucleocapsid protein dimerization domain [103068] (3 families) (S)
  5. 3008883Family d.254.1.2: Coronavirus nucleocapsid protein [143508] (2 proteins)
    C-terminal part of Pfam PF00937
  6. 3008902Protein automated matches [190565] (3 species)
    not a true protein

Species:

  1. 3008903Human sars coronavirus [TaxId:227859] [255302] (1 PDB entry)
  2. 3008906Sars coronavirus [TaxId:229993] [187553] (1 PDB entry)
  3. 3008914Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049] [384480] (11 PDB entries)
    1. Domains for 6wji:
      1. 3008931Domain d6wjia_: 6wji A: [384517]
        automated match to d2cjra1
        complexed with cl
      2. 3008932Domain d6wjib_: 6wji B: [384532]
        automated match to d2cjra1
        complexed with cl
      3. 3008933Domain d6wjic_: 6wji C: [384488]
        automated match to d2cjra1
        complexed with cl
      4. 3008934Domain d6wjid_: 6wji D: [384518]
        automated match to d2cjra1
        complexed with cl
      5. 3008935Domain d6wjie_: 6wji E: [384526]
        automated match to d2cjra1
        complexed with cl
      6. 3008936Domain d6wjif_: 6wji F: [384481]
        automated match to d2cjra1
        complexed with cl
    2. Domains for 6wzo:
      1. 3008916Domain d6wzoa_: 6wzo A: [386387]
        automated match to d2cjra1
      2. 3008917Domain d6wzob_: 6wzo B: [386407]
        automated match to d2cjra1
      3. 3008918Domain d6wzoc_: 6wzo C: [386397]
        automated match to d2cjra1
      4. 3008919Domain d6wzod_: 6wzo D: [386388]
        automated match to d2cjra1
    3. Domains for 6wzq:
      1. 3008921Domain d6wzqa_: 6wzq A: [386389]
        automated match to d2cjra1
        complexed with so4
      2. 3008922Domain d6wzqb_: 6wzq B: [386398]
        automated match to d2cjra1
        complexed with so4
      3. 3008923Domain d6wzqc_: 6wzq C: [386401]
        automated match to d2cjra1
        complexed with so4
      4. 3008924Domain d6wzqd_: 6wzq D: [386391]
        automated match to d2cjra1
        complexed with so4
    4. Domain for 6yun:
    5. Domain for 6zco:
    6. Domains for 7c22:
      1. 3008937Domain d7c22a_: 7c22 A: [385727]
        automated match to d2cjra1
        complexed with act, peg
      2. 3008938Domain d7c22b_: 7c22 B: [385744]
        automated match to d2cjra1
        complexed with act, peg
      3. 3008939Domain d7c22c_: 7c22 C: [385728]
        automated match to d2cjra1
        complexed with act, peg
      4. 3008940Domain d7c22d_: 7c22 D: [385759]
        automated match to d2cjra1
        complexed with act, peg
    7. Domains for 7ce0:
      1. 3008925Domain d7ce0a_: 7ce0 A: [389978]
        automated match to d2jw8a_
      2. 3008926Domain d7ce0b_: 7ce0 B: [389936]
        automated match to d2jw8a_
      3. 3008927Domain d7ce0c_: 7ce0 C: [389977]
        automated match to d2jw8a_
      4. 3008928Domain d7ce0d_: 7ce0 D: [389917]
        automated match to d2jw8a_
    8. Domains for 7de1:
      1. 3008929Domain d7de1a_: 7de1 A: [398968]
        automated match to d2jw8a_
        complexed with peg
      2. 3008930Domain d7de1b_: 7de1 B: [398857]
        automated match to d2jw8a_
        complexed with peg
    9. Domains for 7f2b:
      1. 3085487Domain d7f2bb_: 7f2b B: [421804]
        automated match to d6yuna_
        complexed with cl, po4
      2. 3085490Domain d7f2ba_: 7f2b A: [421807]
        automated match to d6yuna_
        complexed with cl, po4
    10. Domains for 7f2e:
      1. 3085476Domain d7f2eb_: 7f2e B: [421793]
        automated match to d6zcoa_
        complexed with po4
      2. 3085477Domain d7f2ee_: 7f2e E: [421794]
        automated match to d6zcoa_
        complexed with po4
      3. 3085480Domain d7f2ek_: 7f2e K: [421797]
        automated match to d6zcoa_
        complexed with po4
      4. 3085481Domain d7f2ef_: 7f2e F: [421798]
        automated match to d6zcoa_
        complexed with po4
      5. 3085482Domain d7f2ec_: 7f2e C: [421799]
        automated match to d6zcoa_
        complexed with po4
      6. 3085488Domain d7f2eg_: 7f2e G: [421805]
        automated match to d6zcoa_
        complexed with po4
      7. 3085491Domain d7f2ej_: 7f2e J: [421808]
        automated match to d6zcoa_
        complexed with po4
      8. 3085493Domain d7f2ea_: 7f2e A: [421810]
        automated match to d6zcoa_
        complexed with po4
      9. 3085498Domain d7f2ei_: 7f2e I: [421815]
        automated match to d6zcoa_
        complexed with po4
      10. 3085502Domain d7f2el_: 7f2e L: [421819]
        automated match to d6zcoa_
        complexed with po4
      11. 3085503Domain d7f2eh_: 7f2e H: [421820]
        automated match to d6zcoa_
        complexed with po4
      12. 3085515Domain d7f2ed_: 7f2e D: [421832]
        automated match to d6zcoa_
        complexed with po4
    11. Domains for 7n0i:
      1. 3008941Domain d7n0ia_: 7n0i A: [405695]
        Other proteins in same PDB: d7n0ii1, d7n0ii2, d7n0ij1, d7n0ij2, d7n0ik1, d7n0ik2, d7n0il1, d7n0il2
        automated match to d2giba1
        complexed with act, mg
      2. 3008942Domain d7n0ib_: 7n0i B: [405794]
        Other proteins in same PDB: d7n0ii1, d7n0ii2, d7n0ij1, d7n0ij2, d7n0ik1, d7n0ik2, d7n0il1, d7n0il2
        automated match to d2giba1
        complexed with act, mg
      3. 3008943Domain d7n0ic_: 7n0i C: [405686]
        Other proteins in same PDB: d7n0ii1, d7n0ii2, d7n0ij1, d7n0ij2, d7n0ik1, d7n0ik2, d7n0il1, d7n0il2
        automated match to d2giba1
        complexed with act, mg
      4. 3008944Domain d7n0id_: 7n0i D: [405690]
        Other proteins in same PDB: d7n0ii1, d7n0ii2, d7n0ij1, d7n0ij2, d7n0ik1, d7n0ik2, d7n0il1, d7n0il2
        automated match to d2giba1
        complexed with act, mg
      5. 3008945Domain d7n0ie_: 7n0i E: [405773]
        Other proteins in same PDB: d7n0ii1, d7n0ii2, d7n0ij1, d7n0ij2, d7n0ik1, d7n0ik2, d7n0il1, d7n0il2
        automated match to d2giba1
        complexed with act, mg
      6. 3008946Domain d7n0if_: 7n0i F: [405774]
        Other proteins in same PDB: d7n0ii1, d7n0ii2, d7n0ij1, d7n0ij2, d7n0ik1, d7n0ik2, d7n0il1, d7n0il2
        automated match to d2giba1
        complexed with act, mg
      7. 3008947Domain d7n0ig_: 7n0i G: [405702]
        Other proteins in same PDB: d7n0ii1, d7n0ii2, d7n0ij1, d7n0ij2, d7n0ik1, d7n0ik2, d7n0il1, d7n0il2
        automated match to d2giba1
        complexed with act, mg
      8. 3008948Domain d7n0ih_: 7n0i H: [405768]
        Other proteins in same PDB: d7n0ii1, d7n0ii2, d7n0ij1, d7n0ij2, d7n0ik1, d7n0ik2, d7n0il1, d7n0il2
        automated match to d2giba1
        complexed with act, mg

More info for Protein automated matches from d.254.1.2: Coronavirus nucleocapsid protein

Timeline for Protein automated matches from d.254.1.2: Coronavirus nucleocapsid protein: