Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. Fold d.17: Cystatin-like [54402] (7 superfamilies)
    Core: alpha-beta(4); helix packs against coiled antiparallel beta-sheet
  4. Superfamily d.17.1: Cystatin/monellin [54403] (7 families) (S)
    has a additional strand at the N-terminus
  5. Family d.17.1.0: automated matches [191407] (1 protein)
    not a true family
  6. Protein automated matches [190558] (13 species)
    not a true protein

Species:

  1. Artificial gene [TaxId:32630] [238445] (2 PDB entries)
    1. Domain for 4n6t:
    2. Domain for 4n6u:
  2. Ascaris lumbricoides [TaxId:6252] [236403] (1 PDB entry)
  3. Clonorchis sinensis [TaxId:79923] [361834] (1 PDB entry)
  4. Colocasia esculenta [TaxId:4460] [189213] (1 PDB entry)
  5. Cowpea (Vigna unguiculata) [TaxId:3917] [278150] (1 PDB entry)
  6. Human (Homo sapiens) [TaxId:9606] [187545] (8 PDB entries)
    1. Domain for 2ch9:
    2. Domain for 4n6l:
    3. Domains for 4n6m:
      1. Domain d4n6ma_: 4n6m A: [269688]
        automated match to d1tija_
        complexed with so4
      2. Domain d4n6mb_: 4n6m B: [269684]
        automated match to d1tija_
        complexed with so4
    4. Domain for 4n6n:
    5. Domain for 4n6o:
    6. Domains for 6fk0:
      1. Domain d6fk0a1: 6fk0 A:10-124 [354515]
        Other proteins in same PDB: d6fk0a2, d6fk0b2
        automated match to d4n6ma_
      2. Domain d6fk0b1: 6fk0 B:10-124 [354526]
        Other proteins in same PDB: d6fk0a2, d6fk0b2
        automated match to d4n6ma_
    7. Domain for 6yr8:
    8. Domains for 6yxw:
      1. Domain d6yxwb_: 6yxw B: [389211]
        Other proteins in same PDB: d6yxwa_, d6yxwc_
        automated match to d4tx4a_
        complexed with gdp, mg
      2. Domain d6yxwd_: 6yxw D: [389191]
        Other proteins in same PDB: d6yxwa_, d6yxwc_
        automated match to d4tx4a_
        complexed with gdp, mg
  7. Humulus lupulus [TaxId:3486] [392723] (2 PDB entries)
    1. Domain for 6vlp:
    2. Domain for 6vlq:
  8. Ixodes ricinus [TaxId:34613] [353509] (2 PDB entries)
    1. Domains for 5o46:
      1. Domain d5o46a_: 5o46 A: [353510]
        automated match to d3lh4a_
        complexed with gol
      2. Domain d5o46b_: 5o46 B: [353513]
        automated match to d3lh4a_
        complexed with gol
    2. Domains for 6ztk:
      1. Domain d6ztka_: 6ztk A: [407679]
        automated match to d3lh4a_
        complexed with so4, trt
      2. Domain d6ztkb_: 6ztk B: [407658]
        automated match to d3lh4a_
        complexed with so4, trt
  9. Ixodes scapularis [TaxId:6945] [255931] (3 PDB entries)
    1. Domain for 3lh4:
    2. Domain for 3mwz:
    3. Domains for 4zm8:
      1. Domain d4zm8a_: 4zm8 A: [274100]
        automated match to d3lh4a_
      2. Domain d4zm8b_: 4zm8 B: [274105]
        automated match to d3lh4a_
      3. Domain d4zm8c_: 4zm8 C: [274102]
        automated match to d3lh4a_
      4. Domain d4zm8d_: 4zm8 D: [274108]
        automated match to d3lh4a_
  10. Mouse (Mus musculus) [TaxId:10090] [230381] (2 PDB entries)
    1. Domain for 1wnh:
    2. Domains for 6uio:
      1. Domain d6uioa_: 6uio A: [388640]
        automated match to d1roaa_
        complexed with cl, i2i, iod, mes, na, so4
      2. Domain d6uiob_: 6uio B: [388645]
        automated match to d1roaa_
        complexed with cl, i2i, iod, mes, na, so4
      3. Domain d6uioc_: 6uio C: [388638]
        automated match to d1roaa_
        complexed with cl, i2i, iod, mes, na, so4
      4. Domain d6uiod_: 6uio D: [388632]
        automated match to d1roaa_
        complexed with cl, i2i, iod, mes, na, so4
  11. Potato (Solanum tuberosum) [TaxId:4113] [225839] (3 PDB entries)
    1. Domains for 2w9p:
      1. Domain d2w9pa_: 2w9p A: [206720]
        automated match to d3imab_
      2. Domain d2w9pb_: 2w9p B: [206721]
        automated match to d3imab_
      3. Domain d2w9pc_: 2w9p C: [206722]
        automated match to d3imab_
      4. Domain d2w9pd_: 2w9p D: [206723]
        automated match to d3imab_
      5. Domain d2w9pe_: 2w9p E: [206724]
        automated match to d3imab_
      6. Domain d2w9pf_: 2w9p F: [206725]
        automated match to d3imab_
      7. Domain d2w9pg_: 2w9p G: [206726]
        automated match to d3imab_
      8. Domain d2w9ph_: 2w9p H: [206727]
        automated match to d3imab_
      9. Domain d2w9pi_: 2w9p I: [206728]
        automated match to d3imab_
      10. Domain d2w9pj_: 2w9p J: [206729]
        automated match to d3imab_
      11. Domain d2w9pk_: 2w9p K: [206730]
        automated match to d3imab_
      12. Domain d2w9pl_: 2w9p L: [206731]
        automated match to d3imab_
      13. Domain d2w9pm_: 2w9p M: [206732]
        automated match to d3imab_
      14. Domain d2w9pn_: 2w9p N: [206733]
        automated match to d3imab_
    2. Domain for 2w9q:
    3. Domains for 4lzi:
      1. Domain d4lzia1: 4lzi A:7-96 [253704]
        automated match to d3imad_
      2. Domain d4lzia2: 4lzi A:97-186 [253705]
        automated match to d3imad_
      3. Domain d4lzia3: 4lzi A:187-283 [253706]
        automated match to d3imad_
  12. Saccharum officinarum [TaxId:4547] [256120] (2 PDB entries)
    1. Domains for 3ul5:
      1. Domain d3ul5a_: 3ul5 A: [250226]
        automated match to d3imad_
        complexed with gol, na
      2. Domain d3ul5b_: 3ul5 B: [250227]
        automated match to d3imad_
        complexed with gol, na
      3. Domain d3ul5c_: 3ul5 C: [250228]
        automated match to d3imad_
        complexed with gol, na
      4. Domain d3ul5d_: 3ul5 D: [250229]
        automated match to d3imad_
        complexed with gol, na
    2. Domains for 3ul6:
      1. Domain d3ul6a_: 3ul6 A: [250230]
        automated match to d3imad_
        complexed with pe4
      2. Domain d3ul6b_: 3ul6 B: [250231]
        automated match to d3imad_
        complexed with pe4
  13. Soft tick (Ornithodoros moubata) [TaxId:6938] [267850] (1 PDB entry)

More info for Protein automated matches from d.17.1.0: automated matches

Timeline for Protein automated matches from d.17.1.0: automated matches: