SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

Fold d.278: Ligand-binding domain in the NO signalling and Golgi transport [111125] (1 superfamily)
an N-terminal helical bundle and the C-terminal alpha-beta(2)-alpha-beta(2) subdomain enclose a ligand-binding cavity

Superfamily d.278.1: Ligand-binding domain in the NO signalling and Golgi transport [111126] (4 families)

Family d.278.1.2: TRAPP components [118076] (3 proteins)
Pfam PF04051; form homo- and hetero-dimers with the first two helices of one subunit complementing the fold of the other subunit to the H-NOX domain fold

Protein automated matches [190535] (2 species)
not a true protein

Species:

Human (Homo sapiens) [TaxId:9606] [187502] (4 PDB entries)
1. Domain for 1sz7:
  - Domain d1sz7a_: 1sz7 A: [161737]
    automated match to d1wc8a_
    complexed with plm
2. Domain for 2c0j:
  - Domain d2c0ja_: 2c0j A: [163210]
    automated match to d1wc8a_
    complexed with plm
3. Domains for 2cfh:
  1. Domain d2cfha_: 2cfh A: [203782]
    automated match to d1wc8a_
    complexed with plm
  2. Domain d2cfhb_: 2cfh B: [203783]
    automated match to d1wc8a_
    complexed with plm
4. Domain for 3kxc:
  - Domain d3kxca_: 3kxc A: [212574]
    automated match to d1wc8a_
    complexed with plm; mutant
Mouse (Mus musculus) [TaxId:10090] [187891] (4 PDB entries)
1. Domains for 1vpg:
  1. Domain d1vpga_: 1vpg A: [303246]
    automated match to d1wc8a_
    complexed with unl
  2. Domain d1vpgb_: 1vpg B: [303247]
    automated match to d1wc8a_
    complexed with unl
2. Domain for 2j3r:
  - Domain d2j3ra_: 2j3r A: [165850]
    automated match to d1wc8a_
    complexed with no3, plm
3. Domain for 2j3t:
  - Domain d2j3ta_: 2j3t A: [165851]
    automated match to d1wc8a_
    complexed with plm
4. Domains for 2j3w:
  1. Domain d2j3wd_: 2j3w D: [161467]
    Other proteins in same PDB: d2j3wa_, d2j3wb1, d2j3wc_, d2j3wf_
    automated match to d1wc8a_
    complexed with plm
  2. Domain d2j3we_: 2j3w E: [161468]
    Other proteins in same PDB: d2j3wa_, d2j3wb1, d2j3wc_, d2j3wf_
    automated match to d1wc8a_
    complexed with plm

More info for Protein automated matches from d.278.1.2: TRAPP components

Timeline for Protein automated matches from d.278.1.2: TRAPP components:

Protein automated matches from d.278.1.2: TRAPP components first appeared in SCOPe 2.01
Protein automated matches from d.278.1.2: TRAPP components appears in SCOPe 2.07