Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. Fold d.278: Ligand-binding domain in the NO signalling and Golgi transport [111125] (1 superfamily)
    an N-terminal helical bundle and the C-terminal alpha-beta(2)-alpha-beta(2) subdomain enclose a ligand-binding cavity
  4. Superfamily d.278.1: Ligand-binding domain in the NO signalling and Golgi transport [111126] (4 families) (S)
  5. Family d.278.1.2: TRAPP components [118076] (3 proteins)
    Pfam PF04051; form homo- and hetero-dimers with the first two helices of one subunit complementing the fold of the other subunit to the H-NOX domain fold
  6. Protein automated matches [190535] (2 species)
    not a true protein

Species:

  1. Human (Homo sapiens) [TaxId:9606] [187502] (4 PDB entries)
    1. Domain for 1sz7:
    2. Domain for 2c0j:
    3. Domains for 2cfh:
      1. Domain d2cfha_: 2cfh A: [203782]
        automated match to d1wc8a_
        complexed with plm
      2. Domain d2cfhb_: 2cfh B: [203783]
        automated match to d1wc8a_
        complexed with plm
    4. Domain for 3kxc:
  2. Mouse (Mus musculus) [TaxId:10090] [187891] (4 PDB entries)
    1. Domains for 1vpg:
      1. Domain d1vpga_: 1vpg A: [303246]
        automated match to d1wc8a_
        complexed with unl
      2. Domain d1vpgb_: 1vpg B: [303247]
        automated match to d1wc8a_
        complexed with unl
    2. Domain for 2j3r:
    3. Domain for 2j3t:
    4. Domains for 2j3w:
      1. Domain d2j3wd_: 2j3w D: [161467]
        Other proteins in same PDB: d2j3wa_, d2j3wb1, d2j3wc_, d2j3wf_
        automated match to d1wc8a_
        complexed with plm
      2. Domain d2j3we_: 2j3w E: [161468]
        Other proteins in same PDB: d2j3wa_, d2j3wb1, d2j3wc_, d2j3wf_
        automated match to d1wc8a_
        complexed with plm

More info for Protein automated matches from d.278.1.2: TRAPP components

Timeline for Protein automated matches from d.278.1.2: TRAPP components: