Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2898275Fold c.68: Nucleotide-diphospho-sugar transferases [53447] (1 superfamily)
    3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest
  4. 2898276Superfamily c.68.1: Nucleotide-diphospho-sugar transferases [53448] (20 families) (S)
  5. 2899251Family c.68.1.22: Glycosylating toxin catalytic domain-like [159726] (4 proteins)
    contains Glycosyltransferase sugar-binding region containing DXD motif, Pfam PF04488
  6. 2899262Protein automated matches [190532] (4 species)
    not a true protein

Species:

  1. 2899263Clostridioides difficile [TaxId:1496] [334302] (5 PDB entries)
    1. Domain for 5uqm:
    2. Domain for 5uqn:
    3. Domains for 5uqt:
      1. 2899269Domain d5uqta1: 5uqt A:3-539 [334351]
        Other proteins in same PDB: d5uqta2, d5uqtb2
        automated match to d2bvla1
        complexed with agi, mn
      2. 2899270Domain d5uqtb1: 5uqt B:3-539 [334303]
        Other proteins in same PDB: d5uqta2, d5uqtb2
        automated match to d2bvla1
        complexed with agi, mn
    4. Domain for 6oq7:
    5. Domains for 6oq8:
      1. 2899267Domain d6oq8a1: 6oq8 A:1-542 [371265]
        Other proteins in same PDB: d6oq8a2, d6oq8b2
        automated match to d2bvla1
      2. 2899268Domain d6oq8b1: 6oq8 B:1-542 [371268]
        Other proteins in same PDB: d6oq8a2, d6oq8b2
        automated match to d2bvla1
  2. 2899271Clostridium difficile [TaxId:1496] [187493] (1 PDB entry)
  3. 2899273Clostridium sordellii [TaxId:1505] [188384] (3 PDB entries)
    1. Domain for 2vkd:
    2. Domains for 2vkh:
      1. 2899277Domain d2vkha_: 2vkh A: [153225]
        automated match to d2bvla1
        complexed with ca, upg
      2. 2899278Domain d2vkhb_: 2vkh B: [153226]
        automated match to d2bvla1
        complexed with ca, upg
      3. 2899279Domain d2vkhc_: 2vkh C: [153227]
        automated match to d2bvla1
        complexed with ca, upg
    3. Domains for 2vl8:
      1. 2899274Domain d2vl8a_: 2vl8 A: [153266]
        automated match to d2bvla1
        complexed with ca, cts, udp
      2. 2899275Domain d2vl8b_: 2vl8 B: [153267]
        automated match to d2bvla1
        complexed with ca, cts, udp
      3. 2899276Domain d2vl8c_: 2vl8 C: [153268]
        automated match to d2bvla1
        complexed with ca, cts, udp
  4. 2899281Peptoclostridium difficile [TaxId:645463] [342559] (1 PDB entry)

More info for Protein automated matches from c.68.1.22: Glycosylating toxin catalytic domain-like

Timeline for Protein automated matches from c.68.1.22: Glycosylating toxin catalytic domain-like: