Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1473060Class a: All alpha proteins [46456] (285 folds)
  3. 1489461Fold a.39: EF Hand-like [47472] (4 superfamilies)
    core: 4 helices; array of 2 hairpins, opened
  4. 1489462Superfamily a.39.1: EF-hand [47473] (12 families) (S)
    Duplication: consists of two EF-hand units: each is made of two helices connected with calcium-binding loop
  5. 1490700Family a.39.1.0: automated matches [191396] (1 protein)
    not a true family
  6. 1490701Protein automated matches [190513] (24 species)
    not a true protein

Species:

  1. 1490702African clawed frog (Xenopus laevis) [TaxId:8355] [254957] (1 PDB entry)
  2. 1490704Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [255121] (2 PDB entries)
    1. Domains for 2doq:
      1. 1490709Domain d2doqa_: 2doq A: [241638]
        automated match to d2mysb_
        complexed with ca
      2. 1490710Domain d2doqb_: 2doq B: [241639]
        automated match to d2mysb_
        complexed with ca
      3. 1490711Domain d2doqc_: 2doq C: [241640]
        automated match to d2mysb_
        complexed with ca
    2. Domains for 2gv5:
      1. 1490705Domain d2gv5a_: 2gv5 A: [241983]
        automated match to d2mysb_
      2. 1490706Domain d2gv5b_: 2gv5 B: [241984]
        automated match to d2mysb_
      3. 1490707Domain d2gv5d_: 2gv5 D: [241985]
        automated match to d2mysb_
      4. 1490708Domain d2gv5e_: 2gv5 E: [241986]
        automated match to d2mysb_
  3. 1490712Chicken (Gallus gallus) [TaxId:9031] [225390] (1 PDB entry)
  4. 1490714Doryteuthis pealeii [TaxId:1051067] [260698] (3 PDB entries)
    1. Domain for 4ndb:
    2. Domain for 4ndc:
    3. Domain for 4ndd:
  5. 1490718Entamoeba (Entamoeba histolytica) [TaxId:5759] [255281] (1 PDB entry)
  6. 1490720Entamoeba histolytica [TaxId:294381] [255426] (1 PDB entry)
  7. 1490722Euplotes octocarinatus [TaxId:5937] [255282] (1 PDB entry)
  8. 1490724Fruit fly (Drosophila melanogaster) [TaxId:7227] [255450] (3 PDB entries)
    1. Domain for 2lmt:
    2. Domain for 2lmu:
    3. Domain for 2lmv:
  9. 1490728Gadus morhua [TaxId:8049] [259070] (1 PDB entry)
  10. 1490730Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [255034] (1 PDB entry)
  11. 1490732Haemopis marmorata [TaxId:38567] [254994] (2 PDB entries)
    1. Domain for 1yx7:
    2. Domain for 1yx8:
  12. 1490735Human (Homo sapiens) [TaxId:9606] [189519] (37 PDB entries)
    1. Domains for 1xk4:
      1. 1490739Domain d1xk4c_: 1xk4 C: [122057]
        Other proteins in same PDB: d1xk4a1, d1xk4b_, d1xk4e_, d1xk4f_, d1xk4i_, d1xk4j_
        automated match to d3nxaa_
        complexed with ca, cl, flc
      2. 1490740Domain d1xk4d_: 1xk4 D: [122058]
        Other proteins in same PDB: d1xk4a1, d1xk4b_, d1xk4e_, d1xk4f_, d1xk4i_, d1xk4j_
        automated match to d3nxaa_
        complexed with ca, cl, flc
      3. 1490741Domain d1xk4g_: 1xk4 G: [122061]
        Other proteins in same PDB: d1xk4a1, d1xk4b_, d1xk4e_, d1xk4f_, d1xk4i_, d1xk4j_
        automated match to d3nxaa_
        complexed with ca, cl, flc
      4. 1490742Domain d1xk4h_: 1xk4 H: [122062]
        Other proteins in same PDB: d1xk4a1, d1xk4b_, d1xk4e_, d1xk4f_, d1xk4i_, d1xk4j_
        automated match to d3nxaa_
        complexed with ca, cl, flc
      5. 1490743Domain d1xk4k_: 1xk4 K: [122065]
        Other proteins in same PDB: d1xk4a1, d1xk4b_, d1xk4e_, d1xk4f_, d1xk4i_, d1xk4j_
        automated match to d3nxaa_
        complexed with ca, cl, flc
      6. 1490744Domain d1xk4l_: 1xk4 L: [122066]
        Other proteins in same PDB: d1xk4a1, d1xk4b_, d1xk4e_, d1xk4f_, d1xk4i_, d1xk4j_
        automated match to d3nxaa_
        complexed with ca, cl, flc
    2. Domain for 1yur:
    3. Domains for 1yus:
      1. 1490806Domain d1yusa_: 1yus A: [124064]
        automated match to d2h2ka_
      2. 1490807Domain d1yusb_: 1yus B: [124065]
        automated match to d2h2ka_
    4. Domains for 1yut:
      1. 1490795Domain d1yuta_: 1yut A: [124066]
        automated match to d2h2ka_
        complexed with ca
      2. 1490796Domain d1yutb_: 1yut B: [124067]
        automated match to d2h2ka_
        complexed with ca
    5. Domains for 1yuu:
      1. 1490802Domain d1yuua_: 1yuu A: [124068]
        automated match to d2h2ka_
        complexed with ca
      2. 1490803Domain d1yuub_: 1yuu B: [124069]
        automated match to d2h2ka_
        complexed with ca
    6. Domain for 2b1u:
    7. Domains for 2ggz:
      1. 1490763Domain d2ggza_: 2ggz A: [241932]
        automated match to d2r2ia_
        complexed with ca
      2. 1490764Domain d2ggzb_: 2ggz B: [241933]
        automated match to d2r2ia_
        complexed with ca
    8. Domains for 2h2k:
      1. 1490745Domain d2h2ka_: 2h2k A: [204505]
        automated match to d1irjb_
        complexed with ca
      2. 1490746Domain d2h2kb_: 2h2k B: [204506]
        automated match to d1irjb_
        complexed with ca
    9. Domain for 2k7c:
    10. Domain for 2k7d:
    11. Domains for 2k8m:
      1. 1490781Domain d2k8mb_: 2k8m B: [242416]
        Other proteins in same PDB: d2k8ma_, d2k8md_
        automated match to d2h2ka_
      2. 1490782Domain d2k8mc_: 2k8m C: [242417]
        Other proteins in same PDB: d2k8ma_, d2k8md_
        automated match to d2h2ka_
    12. Domains for 2kax:
      1. 1490789Domain d2kaxa_: 2kax A: [242442]
        automated match to d2y5ia_
      2. 1490790Domain d2kaxb_: 2kax B: [242443]
        automated match to d2y5ia_
    13. Domains for 2kay:
      1. 1490779Domain d2kaya_: 2kay A: [242444]
        automated match to d2y5ia_
        complexed with ca
      2. 1490780Domain d2kayb_: 2kay B: [242445]
        automated match to d2y5ia_
        complexed with ca
    14. Domain for 2khn:
    15. Domains for 2ki4:
      1. 1490800Domain d2ki4b_: 2ki4 B: [242521]
        Other proteins in same PDB: d2ki4a_, d2ki4d_
        automated match to d2h2ka_
      2. 1490801Domain d2ki4c_: 2ki4 C: [242522]
        Other proteins in same PDB: d2ki4a_, d2ki4d_
        automated match to d2h2ka_
    16. Domains for 2ki6:
      1. 1490798Domain d2ki6c_: 2ki6 C: [242526]
        Other proteins in same PDB: d2ki6a_, d2ki6b_, d2ki6e_, d2ki6f_
        automated match to d2h2ka_
      2. 1490799Domain d2ki6d_: 2ki6 D: [242527]
        Other proteins in same PDB: d2ki6a_, d2ki6b_, d2ki6e_, d2ki6f_
        automated match to d2h2ka_
    17. Domains for 2kot:
      1. 1490787Domain d2kota_: 2kot A: [242604]
        automated match to d2h2ka_
        complexed with anw
      2. 1490788Domain d2kotb_: 2kot B: [242605]
        automated match to d2h2ka_
        complexed with anw
    18. Domain for 2ksp:
    19. Domains for 2l50:
      1. 1490791Domain d2l50a_: 2l50 A: [242769]
        automated match to d3nxaa_
      2. 1490792Domain d2l50b_: 2l50 B: [242770]
        automated match to d3nxaa_
    20. Domains for 2l51:
      1. 1490785Domain d2l51a_: 2l51 A: [242771]
        automated match to d3nxaa_
        complexed with ca
      2. 1490786Domain d2l51b_: 2l51 B: [242772]
        automated match to d3nxaa_
        complexed with ca
    21. Domains for 2l5x:
      1. 1490793Domain d2l5xb_: 2l5x B: [242782]
        Other proteins in same PDB: d2l5xa_, d2l5xd_
        automated match to d2h2ka_
      2. 1490794Domain d2l5xc_: 2l5x C: [242783]
        Other proteins in same PDB: d2l5xa_, d2l5xd_
        automated match to d2h2ka_
    22. Domains for 2le9:
      1. 1490783Domain d2le9b_: 2le9 B: [242854]
        automated match to d2h2ka_
      2. 1490784Domain d2le9c_: 2le9 C: [242855]
        automated match to d2h2ka_
    23. Domains for 2m0r:
      1. 1490776Domain d2m0ra_: 2m0r A: [243064]
        automated match to d2h2kb_
      2. 1490777Domain d2m0rb_: 2m0r B: [243065]
        automated match to d2h2kb_
    24. Domain for 2m9g:
    25. Domain for 2zn8:
    26. Domains for 2zn9:
      1. 1490755Domain d2zn9a_: 2zn9 A: [207879]
        automated match to d1juoa_
        complexed with 12p, 2pe, ca
      2. 1490756Domain d2zn9b_: 2zn9 B: [207880]
        automated match to d1juoa_
        complexed with 12p, 2pe, ca
    27. Domain for 2znd:
    28. Domains for 2zrs:
      1. 1490765Domain d2zrsa_: 2zrs A: [244977]
        automated match to d3aaja_
        complexed with ca
      2. 1490766Domain d2zrsb_: 2zrs B: [244978]
        automated match to d3aaja_
        complexed with ca
      3. 1490767Domain d2zrsc_: 2zrs C: [244979]
        automated match to d3aaja_
        complexed with ca
      4. 1490768Domain d2zrsd_: 2zrs D: [244980]
        automated match to d3aaja_
        complexed with ca
      5. 1490769Domain d2zrse_: 2zrs E: [244981]
        automated match to d3aaja_
        complexed with ca
      6. 1490770Domain d2zrsf_: 2zrs F: [244982]
        automated match to d3aaja_
        complexed with ca
      7. 1490771Domain d2zrsg_: 2zrs G: [244983]
        automated match to d3aaja_
        complexed with ca
      8. 1490772Domain d2zrsh_: 2zrs H: [244984]
        automated match to d3aaja_
        complexed with ca
    29. Domains for 3aaj:
      1. 1490747Domain d3aaja_: 3aaj A: [208184]
        automated match to d1juoa_
        complexed with ca
      2. 1490748Domain d3aajb_: 3aaj B: [208185]
        automated match to d1juoa_
        complexed with ca
    30. Domain for 3aak:
    31. Domain for 3fia:
    32. Domains for 3nxa:
      1. 1490749Domain d3nxaa_: 3nxa A: [182604]
        automated match to d1cfpa_
      2. 1490750Domain d3nxab_: 3nxa B: [182605]
        automated match to d1cfpa_
      3. 1490751Domain d3nxac_: 3nxa C: [182606]
        automated match to d1cfpa_
      4. 1490752Domain d3nxad_: 3nxa D: [182607]
        automated match to d1cfpa_
    33. Domain for 3vgo:
    34. Domain for 3vrn:
    35. Domains for 3vrq:
      1. 1490753Domain d3vrqa1: 3vrq A:148-233 [250666]
        Other proteins in same PDB: d3vrqa2, d3vrqb2
        automated match to d3buxb1
        complexed with ca; mutant
      2. 1490754Domain d3vrqb1: 3vrq B:148-233 [250668]
        Other proteins in same PDB: d3vrqa2, d3vrqb2
        automated match to d3buxb1
        complexed with ca; mutant
    36. Domains for 4dir:
      1. 1490760Domain d4dira_: 4dir A: [219787]
        automated match to d2y5ie_
        complexed with ca
      2. 1490761Domain d4dirb_: 4dir B: [219788]
        automated match to d2y5ie_
        complexed with ca
    37. Domains for 4okh:
      1. 1490758Domain d4okha_: 4okh A: [257278]
        automated match to d1kfxs_
        complexed with ca, peu
      2. 1490759Domain d4okhc_: 4okh C: [258956]
        automated match to d1kfxs_
        complexed with ca, peu
  13. 1490809Lethocerus indicus [TaxId:212017] [255277] (2 PDB entries)
    1. Domain for 2jnf:
    2. Domain for 2k2a:
  14. 1490812Loligo pealeii [TaxId:6621] [187536] (1 PDB entry)
  15. 1490815Mouse (Mus musculus) [TaxId:10090] [255298] (2 PDB entries)
    1. Domain for 2jul:
    2. Domain for 2m28:
  16. 1490818Norway rat (Rattus norvegicus) [TaxId:10116] [238064] (1 PDB entry)
  17. 1490823Placopecten magellanicus [TaxId:6577] [255532] (1 PDB entry)
  18. 1490826Plasmodium falciparum [TaxId:36329] [226712] (1 PDB entry)
  19. 1490828Plasmodium knowlesi [TaxId:5851] [234464] (1 PDB entry)
  20. 1490832Renilla muelleri [TaxId:37510] [187819] (2 PDB entries)
    1. Domain for 2hps:
    2. Domains for 2hq8:
      1. 1490834Domain d2hq8a_: 2hq8 A: [165206]
        automated match to d1q80a_
        complexed with ca
      2. 1490835Domain d2hq8b_: 2hq8 B: [165207]
        automated match to d1q80a_
        complexed with ca
  21. 1490836Slime mold (Physarum polycephalum) [TaxId:5791] [187468] (1 PDB entry)
  22. 1490838Soybean (Glycine max) [TaxId:3847] [255586] (1 PDB entry)
  23. 1490840Thale cress (Arabidopsis thaliana) [TaxId:3702] [226776] (3 PDB entries)
    1. Domain for 1v1f:
    2. Domain for 1v1g:
    3. Domain for 2ehb:
  24. 1490844Todarodes pacificus [TaxId:6637] [189005] (2 PDB entries)
    1. Domains for 3i5f:
      1. 1490846Domain d3i5fb_: 3i5f B: [246718]
        automated match to d1br1b_
        complexed with adp, mg
      2. 1490847Domain d3i5fc_: 3i5f C: [246719]
        automated match to d1br1b_
        complexed with adp, mg
    2. Domain for 3i5g:

More info for Protein automated matches from a.39.1.0: automated matches

Timeline for Protein automated matches from a.39.1.0: automated matches: