Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2319424Fold a.39: EF Hand-like [47472] (4 superfamilies)
    core: 4 helices; array of 2 hairpins, opened
  4. 2319425Superfamily a.39.1: EF-hand [47473] (12 families) (S)
    Duplication: consists of two EF-hand units: each is made of two helices connected with calcium-binding loop
  5. 2320807Family a.39.1.0: automated matches [191396] (1 protein)
    not a true family
  6. 2320808Protein automated matches [190513] (31 species)
    not a true protein

Species:

  1. 2320809African clawed frog (Xenopus laevis) [TaxId:8355] [254957] (1 PDB entry)
  2. 2320811Atlantic cod (Gadus morhua) [TaxId:8049] [259070] (1 PDB entry)
  3. 2320813Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [255121] (3 PDB entries)
    1. Domains for 2doq:
      1. 2320818Domain d2doqa_: 2doq A: [241638]
        automated match to d2mysb_
        complexed with ca
      2. 2320819Domain d2doqb_: 2doq B: [241639]
        automated match to d2mysb_
        complexed with ca
      3. 2320820Domain d2doqc_: 2doq C: [241640]
        automated match to d2mysb_
        complexed with ca
    2. Domains for 2gv5:
      1. 2320814Domain d2gv5a_: 2gv5 A: [241983]
        automated match to d2mysb_
      2. 2320815Domain d2gv5b_: 2gv5 B: [241984]
        automated match to d2mysb_
      3. 2320816Domain d2gv5d_: 2gv5 D: [241985]
        automated match to d2mysb_
      4. 2320817Domain d2gv5e_: 2gv5 E: [241986]
        automated match to d2mysb_
    3. Domain for 2m1u:
  4. 2320822Chicken (Gallus gallus) [TaxId:9031] [225390] (1 PDB entry)
  5. 2320824Coccidioides immitis [TaxId:246410] [272847] (1 PDB entry)
  6. 2320826Cow (Bos taurus) [TaxId:9913] [311228] (3 PDB entries)
    1. Domain for 2na0:
    2. Domains for 5n69:
      1. 2320827Domain d5n69g_: 5n69 G: [337872]
        automated match to d3i5fc_
        complexed with 2ow, adp, gol, mg, tce, vo4
      2. 2320828Domain d5n69h_: 5n69 H: [337915]
        automated match to d3i5fc_
        complexed with 2ow, adp, gol, mg, tce, vo4
    3. Domains for 6fsa:
      1. 3055100Domain d6fsah_: 6fsa H: [355162]
        automated match to d5n69g_
        complexed with adp, edo, fmt, mg
      2. 3055108Domain d6fsad_: 6fsa D: [355170]
        automated match to d5n69g_
        complexed with adp, edo, fmt, mg
  7. 2320830Doryteuthis pealeii [TaxId:1051067] [260698] (4 PDB entries)
    1. Domains for 4ndb:
      1. 2320831Domain d4ndba_: 4ndb A: [260707]
        automated match to d2ccma_
        complexed with ca; mutant
      2. 2320832Domain d4ndbb_: 4ndb B: [263120]
        automated match to d2ccma_
        complexed with ca; mutant
    2. Domains for 4ndc:
      1. 2320833Domain d4ndca_: 4ndc A: [260708]
        automated match to d2ccma_
        complexed with ca; mutant
      2. 2320834Domain d4ndcb_: 4ndc B: [263121]
        automated match to d2ccma_
        complexed with ca; mutant
    3. Domains for 4ndd:
      1. 2320836Domain d4ndda_: 4ndd A: [263122]
        automated match to d2ccma_
        complexed with ca; mutant
      2. 2320837Domain d4nddb_: 4ndd B: [260699]
        automated match to d2ccma_
        complexed with ca; mutant
    4. Domain for 5f6t:
  8. 2320838Entamoeba (Entamoeba histolytica) [TaxId:5759] [255281] (1 PDB entry)
  9. 2320840Entamoeba histolytica [TaxId:294381] [255426] (2 PDB entries)
    1. Domain for 2ktg:
    2. Domain for 2lc5:
  10. 2320843Entamoeba histolytica [TaxId:885315] [333695] (1 PDB entry)
  11. 2320845Entamoeba histolytica [TaxId:885318] [268485] (1 PDB entry)
  12. 2320847Euplotes octocarinatus [TaxId:5937] [255282] (1 PDB entry)
  13. 2320849Fruit fly (Drosophila melanogaster) [TaxId:7227] [255450] (3 PDB entries)
    1. Domain for 2lmt:
    2. Domain for 2lmu:
    3. Domain for 2lmv:
  14. 2320853Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [255034] (1 PDB entry)
  15. 2320855Haemopis marmorata [TaxId:38567] [254994] (2 PDB entries)
    1. Domain for 1yx7:
    2. Domain for 1yx8:
  16. 2320858Human (Homo sapiens) [TaxId:9606] [189519] (52 PDB entries)
    1. Domain for 1dkv:
    2. Domains for 1xk4:
      1. 2320862Domain d1xk4c_: 1xk4 C: [122057]
        Other proteins in same PDB: d1xk4a1, d1xk4b_, d1xk4e_, d1xk4f_, d1xk4i_, d1xk4j_
        automated match to d3nxaa_
        complexed with ca, cl, flc
      2. 2320863Domain d1xk4d_: 1xk4 D: [122058]
        Other proteins in same PDB: d1xk4a1, d1xk4b_, d1xk4e_, d1xk4f_, d1xk4i_, d1xk4j_
        automated match to d3nxaa_
        complexed with ca, cl, flc
      3. 2320864Domain d1xk4g_: 1xk4 G: [122061]
        Other proteins in same PDB: d1xk4a1, d1xk4b_, d1xk4e_, d1xk4f_, d1xk4i_, d1xk4j_
        automated match to d3nxaa_
        complexed with ca, cl, flc
      4. 2320865Domain d1xk4h_: 1xk4 H: [122062]
        Other proteins in same PDB: d1xk4a1, d1xk4b_, d1xk4e_, d1xk4f_, d1xk4i_, d1xk4j_
        automated match to d3nxaa_
        complexed with ca, cl, flc
      5. 2320866Domain d1xk4k_: 1xk4 K: [122065]
        Other proteins in same PDB: d1xk4a1, d1xk4b_, d1xk4e_, d1xk4f_, d1xk4i_, d1xk4j_
        automated match to d3nxaa_
        complexed with ca, cl, flc
      6. 2320867Domain d1xk4l_: 1xk4 L: [122066]
        Other proteins in same PDB: d1xk4a1, d1xk4b_, d1xk4e_, d1xk4f_, d1xk4i_, d1xk4j_
        automated match to d3nxaa_
        complexed with ca, cl, flc
    3. Domain for 1yur:
    4. Domains for 1yus:
      1. 2320954Domain d1yusa_: 1yus A: [124064]
        automated match to d2h2ka_
      2. 2320955Domain d1yusb_: 1yus B: [124065]
        automated match to d2h2ka_
    5. Domains for 1yut:
      1. 2320941Domain d1yuta_: 1yut A: [124066]
        automated match to d2h2ka_
        complexed with ca
      2. 2320942Domain d1yutb_: 1yut B: [124067]
        automated match to d2h2ka_
        complexed with ca
    6. Domains for 1yuu:
      1. 2320949Domain d1yuua_: 1yuu A: [124068]
        automated match to d2h2ka_
        complexed with ca
      2. 2320950Domain d1yuub_: 1yuu B: [124069]
        automated match to d2h2ka_
        complexed with ca
    7. Domain for 2b1u:
    8. Domain for 2bec:
    9. Domain for 2e30:
    10. Domains for 2ggz:
      1. 2320898Domain d2ggza_: 2ggz A: [241932]
        automated match to d2r2ia_
        complexed with ca
      2. 2320899Domain d2ggzb_: 2ggz B: [241933]
        automated match to d2r2ia_
        complexed with ca
    11. Domains for 2h2k:
      1. 2320868Domain d2h2ka1: 2h2k A:1-91 [204505]
        Other proteins in same PDB: d2h2ka2
        automated match to d1irjb_
        complexed with ca
      2. 2320869Domain d2h2kb_: 2h2k B: [204506]
        Other proteins in same PDB: d2h2ka2
        automated match to d1irjb_
        complexed with ca
    12. Domain for 2k7c:
    13. Domain for 2k7d:
    14. Domains for 2k8m:
      1. 2320922Domain d2k8mb_: 2k8m B: [242416]
        Other proteins in same PDB: d2k8ma1, d2k8ma2, d2k8md1, d2k8md2
        automated match to d2h2ka_
      2. 2320923Domain d2k8mc_: 2k8m C: [242417]
        Other proteins in same PDB: d2k8ma1, d2k8ma2, d2k8md1, d2k8md2
        automated match to d2h2ka_
    15. Domains for 2kax:
      1. 2320933Domain d2kaxa_: 2kax A: [242442]
        automated match to d2y5ia_
      2. 2320934Domain d2kaxb_: 2kax B: [242443]
        automated match to d2y5ia_
    16. Domains for 2kay:
      1. 2320920Domain d2kaya_: 2kay A: [242444]
        automated match to d2y5ia_
        complexed with ca
      2. 2320921Domain d2kayb_: 2kay B: [242445]
        automated match to d2y5ia_
        complexed with ca
    17. Domain for 2khn:
    18. Domains for 2ki4:
      1. 2320947Domain d2ki4b_: 2ki4 B: [242521]
        Other proteins in same PDB: d2ki4a_, d2ki4d_
        automated match to d2h2ka_
      2. 2320948Domain d2ki4c_: 2ki4 C: [242522]
        Other proteins in same PDB: d2ki4a_, d2ki4d_
        automated match to d2h2ka_
    19. Domains for 2ki6:
      1. 2320945Domain d2ki6c_: 2ki6 C: [242526]
        Other proteins in same PDB: d2ki6a_, d2ki6b_, d2ki6e_, d2ki6f_
        automated match to d2h2ka_
      2. 2320946Domain d2ki6d_: 2ki6 D: [242527]
        Other proteins in same PDB: d2ki6a_, d2ki6b_, d2ki6e_, d2ki6f_
        automated match to d2h2ka_
    20. Domains for 2kot:
      1. 2320931Domain d2kota_: 2kot A: [242604]
        automated match to d2h2ka_
        complexed with anw
      2. 2320932Domain d2kotb_: 2kot B: [242605]
        automated match to d2h2ka_
        complexed with anw
    21. Domain for 2ksp:
    22. Domains for 2l0u:
      1. 2320937Domain d2l0ua_: 2l0u A: [304171]
        automated match to d2l51a_
      2. 2320938Domain d2l0ub_: 2l0u B: [304172]
        automated match to d2l51a_
    23. Domains for 2l0v:
      1. 2320939Domain d2l0va_: 2l0v A: [304173]
        automated match to d2l51a_
        complexed with ca
      2. 2320940Domain d2l0vb_: 2l0v B: [304174]
        automated match to d2l51a_
        complexed with ca
    24. Domains for 2l50:
      1. 2320935Domain d2l50a_: 2l50 A: [242769]
        automated match to d3nxaa_
      2. 2320936Domain d2l50b_: 2l50 B: [242770]
        automated match to d3nxaa_
    25. Domains for 2l51:
      1. 2320929Domain d2l51a_: 2l51 A: [242771]
        automated match to d3nxaa_
        complexed with ca
      2. 2320930Domain d2l51b_: 2l51 B: [242772]
        automated match to d3nxaa_
        complexed with ca
    26. Domains for 2l5x:
      1. 2320925Domain d2l5xb_: 2l5x B: [242782]
        Other proteins in same PDB: d2l5xa_, d2l5xd_
        automated match to d2h2ka_
      2. 2320926Domain d2l5xc_: 2l5x C: [242783]
        Other proteins in same PDB: d2l5xa_, d2l5xd_
        automated match to d2h2ka_
    27. Domains for 2le9:
      1. 2320927Domain d2le9b_: 2le9 B: [242854]
        automated match to d2h2ka_
      2. 2320928Domain d2le9c_: 2le9 C: [242855]
        automated match to d2h2ka_
    28. Domains for 2m0r:
      1. 2320915Domain d2m0ra_: 2m0r A: [243064]
        automated match to d2h2kb_
      2. 2320916Domain d2m0rb_: 2m0r B: [243065]
        automated match to d2h2kb_
    29. Domains for 2m9g:
      1. 2320913Domain d2m9ga_: 2m9g A: [256416]
        automated match to d1mr8a_
      2. 2320914Domain d2m9gb_: 2m9g B: [262213]
        automated match to d2m9ga_
    30. Domain for 2n8y:
    31. Domain for 2n8z:
    32. Domain for 2zn8:
    33. Domains for 2zn9:
      1. 2320879Domain d2zn9a_: 2zn9 A: [207879]
        automated match to d1juoa_
        complexed with 12p, 2pe, ca
      2. 2320880Domain d2zn9b_: 2zn9 B: [207880]
        automated match to d1juoa_
        complexed with 12p, 2pe, ca
    34. Domain for 2znd:
    35. Domains for 2zrs:
      1. 2320903Domain d2zrsa_: 2zrs A: [244977]
        automated match to d3aaja_
        complexed with ca
      2. 2320904Domain d2zrsb_: 2zrs B: [244978]
        automated match to d3aaja_
        complexed with ca
      3. 2320905Domain d2zrsc_: 2zrs C: [244979]
        automated match to d3aaja_
        complexed with ca
      4. 2320906Domain d2zrsd_: 2zrs D: [244980]
        automated match to d3aaja_
        complexed with ca
      5. 2320907Domain d2zrse_: 2zrs E: [244981]
        automated match to d3aaja_
        complexed with ca
      6. 2320908Domain d2zrsf_: 2zrs F: [244982]
        automated match to d3aaja_
        complexed with ca
      7. 2320909Domain d2zrsg_: 2zrs G: [244983]
        automated match to d3aaja_
        complexed with ca
      8. 2320910Domain d2zrsh_: 2zrs H: [244984]
        automated match to d3aaja_
        complexed with ca
    36. Domains for 3aaj:
      1. 2320870Domain d3aaja_: 3aaj A: [208184]
        automated match to d1juoa_
        complexed with ca
      2. 2320871Domain d3aajb_: 3aaj B: [208185]
        automated match to d1juoa_
        complexed with ca
    37. Domain for 3aak:
    38. Domain for 3fia:
    39. Domains for 3nxa:
      1. 2320872Domain d3nxaa_: 3nxa A: [182604]
        automated match to d1cfpa_
      2. 2320873Domain d3nxab_: 3nxa B: [182605]
        automated match to d1cfpa_
      3. 2320874Domain d3nxac_: 3nxa C: [182606]
        automated match to d1cfpa_
      4. 2320875Domain d3nxad_: 3nxa D: [182607]
        automated match to d1cfpa_
    40. Domain for 3vgo:
    41. Domain for 3vrn:
    42. Domains for 3vrq:
      1. 2320876Domain d3vrqa1: 3vrq A:148-233 [250666]
        Other proteins in same PDB: d3vrqa2, d3vrqa3, d3vrqb2, d3vrqb3
        automated match to d3buxb1
        complexed with ca; mutant
      2. 2320877Domain d3vrqb1: 3vrq B:148-233 [250668]
        Other proteins in same PDB: d3vrqa2, d3vrqa3, d3vrqb2, d3vrqb3
        automated match to d3buxb1
        complexed with ca; mutant
    43. Domains for 4dir:
      1. 2320888Domain d4dira_: 4dir A: [219787]
        automated match to d2y5ie_
        complexed with ca
      2. 2320889Domain d4dirb_: 4dir B: [219788]
        automated match to d2y5ie_
        complexed with ca
    44. Domains for 4okh:
      1. 2320883Domain d4okha1: 4okh A:651-821 [257278]
        Other proteins in same PDB: d4okha2, d4okhb2
        automated match to d1kfxs_
        complexed with ca, peu
      2. 2320884Domain d4okhb1: 4okh B:647-821 [263298]
        Other proteins in same PDB: d4okha2, d4okhb2
        automated match to d4okha_
        complexed with ca, peu
      3. 2320885Domain d4okhc_: 4okh C: [258956]
        Other proteins in same PDB: d4okha2, d4okhb2
        automated match to d1kfxs_
        complexed with ca, peu
    45. Domains for 5g4p:
      1. 2320894Domain d5g4pa_: 5g4p A: [333698]
        automated match to d2d8na_
        complexed with ca
      2. 2320895Domain d5g4pe_: 5g4p E: [333764]
        automated match to d2d8na_
        complexed with ca
    46. Domains for 5g58:
      1. 2320896Domain d5g58a_: 5g58 A: [333700]
        automated match to d2d8na_
        complexed with ca; mutant
      2. 2320897Domain d5g58e_: 5g58 E: [333705]
        automated match to d2d8na_
        complexed with ca; mutant
    47. Domains for 5gqq:
      1. 2320886Domain d5gqqc1: 5gqq C:24-191 [324648]
        Other proteins in same PDB: d5gqqa_, d5gqqb_, d5gqqc2, d5gqqd2
        automated match to d3aaja_
        complexed with ca, cl
      2. 2320887Domain d5gqqd1: 5gqq D:24-188 [324651]
        Other proteins in same PDB: d5gqqa_, d5gqqb_, d5gqqc2, d5gqqd2
        automated match to d3aaja_
        complexed with ca, cl
    48. Domain for 5joj:
    49. Domain for 5jol:
    50. Domains for 5k89:
      1. 2320890Domain d5k89a_: 5k89 A: [332975]
        automated match to d2kaya_
        complexed with ca, trs
      2. 2320891Domain d5k89c_: 5k89 C: [332911]
        automated match to d2kaya_
        complexed with ca, trs
      3. 2320892Domain d5k89h_: 5k89 H: [332944]
        automated match to d2kaya_
        complexed with ca, trs
    51. Domains for 5m6c:
      1. 2320900Domain d5m6ca_: 5m6c A: [332978]
        automated match to d2d8na_
        complexed with ca; mutant
      2. 2320901Domain d5m6ce_: 5m6c E: [333006]
        automated match to d2d8na_
        complexed with ca; mutant
    52. Domain for 5t7c:
  17. 2320957Lethocerus indicus [TaxId:212017] [255277] (2 PDB entries)
    1. Domain for 2jnf:
    2. Domain for 2k2a:
  18. 2320960Loligo pealeii [TaxId:6621] [187536] (1 PDB entry)
  19. 2320963Mouse (Mus musculus) [TaxId:10090] [255298] (3 PDB entries)
    1. Domain for 2jul:
    2. Domain for 2m28:
    3. Domain for 5jjg:
  20. 2320967Norway rat (Rattus norvegicus) [TaxId:10116] [238064] (3 PDB entries)
    1. Domains for 2ct9:
      1. 2320968Domain d2ct9a1: 2ct9 A:8-195 [303696]
        Other proteins in same PDB: d2ct9a2, d2ct9b2
        automated match to d2e30a_
        complexed with ca
      2. 2320969Domain d2ct9b1: 2ct9 B:3-195 [303698]
        Other proteins in same PDB: d2ct9a2, d2ct9b2
        automated match to d2e30a_
        complexed with ca
    2. Domains for 4ov2:
      1. 2320970Domain d4ov2a_: 4ov2 A: [238066]
        automated match to d1dgua_
        complexed with ca
      2. 2320971Domain d4ov2b_: 4ov2 B: [240726]
        automated match to d4ov2d_
        complexed with ca
      3. 2320972Domain d4ov2c_: 4ov2 C: [240727]
        automated match to d4ov2d_
        complexed with ca
      4. 2320973Domain d4ov2d_: 4ov2 D: [238065]
        automated match to d1dgua_
        complexed with ca
    3. Domains for 4yru:
      1. 2320974Domain d4yrua_: 4yru A: [271146]
        automated match to d1ikua_
        complexed with ca
      2. 2320975Domain d4yrub_: 4yru B: [271134]
        automated match to d1ikua_
        complexed with ca
      3. 2320976Domain d4yruc_: 4yru C: [271145]
        automated match to d1ikua_
        complexed with ca
      4. 2320977Domain d4yrud_: 4yru D: [271143]
        automated match to d1ikua_
        complexed with ca
  21. 2320978Placopecten magellanicus [TaxId:6577] [255532] (1 PDB entry)
  22. 2320981Plasmodium falciparum [TaxId:36329] [226712] (1 PDB entry)
  23. 2320983Plasmodium knowlesi [TaxId:5851] [234464] (1 PDB entry)
  24. 2320987Renilla muelleri [TaxId:37510] [187819] (2 PDB entries)
    1. Domain for 2hps:
    2. Domains for 2hq8:
      1. 2320989Domain d2hq8a_: 2hq8 A: [165206]
        automated match to d1q80a_
        complexed with ca
      2. 2320990Domain d2hq8b_: 2hq8 B: [165207]
        automated match to d1q80a_
        complexed with ca
  25. 2320991Slime mold (Dictyostelium discoideum) [TaxId:44689] [268014] (1 PDB entry)
  26. 2320993Slime mold (Physarum polycephalum) [TaxId:5791] [187468] (1 PDB entry)
  27. 2320995Soybean (Glycine max) [TaxId:3847] [255586] (2 PDB entries)
    1. Domain for 2kn2:
    2. Domain for 2rob:
  28. 2320998Thale cress (Arabidopsis thaliana) [TaxId:3702] [226776] (3 PDB entries)
    1. Domain for 1v1f:
    2. Domain for 1v1g:
    3. Domain for 2ehb:
  29. 2321002Todarodes pacificus [TaxId:6637] [189005] (4 PDB entries)
    1. Domains for 2ovk:
      1. 2321004Domain d2ovkb_: 2ovk B: [304308]
        automated match to d3i5gb_
        complexed with ca, mli
      2. 2321005Domain d2ovkc_: 2ovk C: [304309]
        automated match to d3i5fc_
        complexed with ca, mli
    2. Domains for 2oy6:
      1. 2321006Domain d2oy6b_: 2oy6 B: [304310]
        automated match to d3i5gb_
        complexed with adp, mg
      2. 2321007Domain d2oy6c_: 2oy6 C: [304311]
        automated match to d3i5fc_
        complexed with adp, mg
    3. Domains for 3i5f:
      1. 2321008Domain d3i5fb_: 3i5f B: [246718]
        automated match to d1br1b_
        complexed with adp, mg
      2. 2321009Domain d3i5fc_: 3i5f C: [246719]
        automated match to d1br1b_
        complexed with adp, mg
    4. Domain for 3i5g:
  30. 2321010Toxoplasma gondii [TaxId:5811] [339885] (1 PDB entry)
  31. 3048503Scomber japonicus [TaxId:13676] [348565] (1 PDB entry)

More info for Protein automated matches from a.39.1.0: automated matches

Timeline for Protein automated matches from a.39.1.0: automated matches: