Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 3029608Class g: Small proteins [56992] (100 folds)
  3. 3033576Fold g.17: Cystine-knot cytokines [57500] (1 superfamily)
    disulfide-rich fold; common core is all-beta
  4. 3033577Superfamily g.17.1: Cystine-knot cytokines [57501] (8 families) (S)
  5. 3033932Family g.17.1.0: automated matches [191392] (1 protein)
    not a true family
  6. 3033933Protein automated matches [190506] (3 species)
    not a true protein

Species:

  1. 3033934Human (Homo sapiens) [TaxId:9606] [187459] (38 PDB entries)
    1. Domain for 1waq:
    2. Domain for 1zkz:
    3. Domains for 2ask:
      1. 3033935Domain d2aska_: 2ask A: [197760]
        automated match to d2askb_
        complexed with so4
      2. 3033936Domain d2askb_: 2ask B: [193820]
        automated match to d2gh0d_
        complexed with so4
    4. Domain for 2bhk:
    5. Domains for 2c7w:
      1. 3033980Domain d2c7wa_: 2c7w A: [163294]
        automated match to d1katv_
        complexed with mpd
      2. 3033981Domain d2c7wb_: 2c7w B: [163295]
        automated match to d1katv_
        complexed with mpd
    6. Domains for 2gh0:
      1. 3033945Domain d2gh0c1: 2gh0 C:122-219 [164690]
        Other proteins in same PDB: d2gh0c2, d2gh0d2
        automated match to d1agqa_
        complexed with nag
      2. 3033946Domain d2gh0d1: 2gh0 D:122-219 [164691]
        Other proteins in same PDB: d2gh0c2, d2gh0d2
        automated match to d1agqa_
        complexed with nag
    7. Domains for 2gyr:
      1. 3033983Domain d2gyra_: 2gyr A: [164871]
        automated match to d1agqa_
      2. 3033984Domain d2gyrb_: 2gyr B: [164872]
        automated match to d1agqa_
      3. 3033985Domain d2gyrc_: 2gyr C: [164873]
        automated match to d1agqa_
      4. 3033986Domain d2gyrd_: 2gyr D: [164874]
        automated match to d1agqa_
      5. 3033987Domain d2gyre_: 2gyr E: [164875]
        automated match to d1agqa_
      6. 3033988Domain d2gyrf_: 2gyr F: [164876]
        automated match to d1agqa_
    8. Domain for 2gyz:
    9. Domains for 2qcq:
      1. 3033951Domain d2qcqa_: 2qcq A: [167520]
        automated match to d1es7a_
      2. 3033952Domain d2qcqb_: 2qcq B: [167521]
        automated match to d1es7a_
    10. Domains for 2x1w:
      1. 3033963Domain d2x1wa_: 2x1w A: [169807]
        automated match to d1katv_
        complexed with cs, nag
      2. 3033964Domain d2x1wb_: 2x1w B: [169808]
        automated match to d1katv_
        complexed with cs, nag
      3. 3033965Domain d2x1wc_: 2x1w C: [169809]
        automated match to d1katv_
        complexed with cs, nag
      4. 3033966Domain d2x1wd_: 2x1w D: [169810]
        automated match to d1katv_
        complexed with cs, nag
    11. Domain for 2x1x:
    12. Domains for 2xac:
      1. 3033995Domain d2xaca_: 2xac A: [169973]
        Other proteins in same PDB: d2xacc_, d2xacx_
        automated match to d1katv_
        complexed with gol
      2. 3033996Domain d2xacb_: 2xac B: [169974]
        Other proteins in same PDB: d2xacc_, d2xacx_
        automated match to d1katv_
        complexed with gol
    13. Domain for 2xv7:
    14. Domain for 3evs:
    15. Domains for 3qb4:
      1. 3033969Domain d3qb4a_: 3qb4 A: [195836]
        Other proteins in same PDB: d3qb4b_, d3qb4d_
        automated match to d2bhka_
      2. 3033970Domain d3qb4c_: 3qb4 C: [195835]
        Other proteins in same PDB: d3qb4b_, d3qb4d_
        automated match to d2bhka_
    16. Domain for 4mid:
    17. Domain for 4mpl:
    18. Domain for 5e4g:
    19. Domains for 5f3b:
      1. 3033948Domain d5f3bc_: 5f3b C: [323448]
        Other proteins in same PDB: d5f3ba_, d5f3bb1, d5f3bb2, d5f3be_, d5f3bf1, d5f3bf2
        automated match to d3hh2a_
        complexed with gol
      2. 3033949Domain d5f3bd_: 5f3b D: [323449]
        Other proteins in same PDB: d5f3ba_, d5f3bb1, d5f3bb2, d5f3be_, d5f3bf1, d5f3bf2
        automated match to d3hh2a_
        complexed with gol
    20. Domains for 5f3h:
      1. 3033990Domain d5f3hi_: 5f3h I: [323391]
        Other proteins in same PDB: d5f3ha_, d5f3hb1, d5f3hb2, d5f3hc_, d5f3hd1, d5f3hd2, d5f3he_, d5f3hf1, d5f3hf2, d5f3hg_, d5f3hh1, d5f3hh2
        automated match to d3hh2a_
      2. 3033991Domain d5f3hj_: 5f3h J: [323336]
        Other proteins in same PDB: d5f3ha_, d5f3hb1, d5f3hb2, d5f3hc_, d5f3hd1, d5f3hd2, d5f3he_, d5f3hf1, d5f3hf2, d5f3hg_, d5f3hh1, d5f3hh2
        automated match to d3hh2a_
      3. 3033992Domain d5f3hk_: 5f3h K: [323356]
        Other proteins in same PDB: d5f3ha_, d5f3hb1, d5f3hb2, d5f3hc_, d5f3hd1, d5f3hd2, d5f3he_, d5f3hf1, d5f3hf2, d5f3hg_, d5f3hh1, d5f3hh2
        automated match to d3hh2a_
      4. 3033993Domain d5f3hl_: 5f3h L: [323344]
        Other proteins in same PDB: d5f3ha_, d5f3hb1, d5f3hb2, d5f3hc_, d5f3hd1, d5f3hd2, d5f3he_, d5f3hf1, d5f3hf2, d5f3hg_, d5f3hh1, d5f3hh2
        automated match to d3hh2a_
    21. Domains for 5hk5:
      1. 3033998Domain d5hk5a_: 5hk5 A: [321714]
        automated match to d1m4ul_
      2. 3033999Domain d5hk5b_: 5hk5 B: [321715]
        automated match to d1m4ul_
      3. 3034000Domain d5hk5c_: 5hk5 C: [321712]
        automated match to d1m4ul_
      4. 3034001Domain d5hk5d_: 5hk5 D: [321713]
        automated match to d1m4ul_
    22. Domain for 5i05:
    23. Domains for 5jhw:
      1. 3033967Domain d5jhwa_: 5jhw A: [331637]
        automated match to d3hh2a_
        complexed with flc, po4
      2. 3033968Domain d5jhwb_: 5jhw B: [331665]
        automated match to d3hh2a_
        complexed with flc, po4
    24. Domains for 5mr4:
      1. 3033974Domain d5mr4a_: 5mr4 A: [346574]
        automated match to d2aska_
        complexed with fmt, peg
      2. 3033975Domain d5mr4b_: 5mr4 B: [346673]
        automated match to d2aska_
        complexed with fmt, peg
    25. Domains for 5mr5:
      1. 3033956Domain d5mr5a_: 5mr5 A: [346670]
        automated match to d2aska_
        complexed with gol, so4
      2. 3033957Domain d5mr5b_: 5mr5 B: [346538]
        automated match to d2aska_
        complexed with gol, so4
    26. Domains for 5mr9:
      1. 3033977Domain d5mr9a_: 5mr9 A: [346500]
        automated match to d2aska_
      2. 3033978Domain d5mr9b_: 5mr9 B: [346655]
        automated match to d2aska_
    27. Domains for 5nmz:
      1. 3033941Domain d5nmza_: 5nmz A: [347041]
        automated match to d2aska_
        complexed with gol
      2. 3033942Domain d5nmzb_: 5nmz B: [346893]
        automated match to d2aska_
        complexed with gol
      3. 3033943Domain d5nmzc_: 5nmz C: [347149]
        automated match to d2aska_
        complexed with gol
      4. 3033944Domain d5nmzd_: 5nmz D: [347501]
        automated match to d2aska_
        complexed with gol
    28. Domains for 5vt2:
      1. 3033971Domain d5vt2a_: 5vt2 A: [341056]
        automated match to d2qcqb_
        complexed with edo
      2. 3033972Domain d5vt2b_: 5vt2 B: [341055]
        automated match to d2qcqb_
        complexed with edo
    29. Domain for 5vz3:
    30. Domain for 5vz4:
    31. Domain for 6mac:
    32. Domain for 6sf1:
    33. Domain for 6sf3:
    34. Domain for 6z3g:
    35. Domain for 6z3h:
    36. Domains for 6z3j:
      1. 3033937Domain d6z3ja_: 6z3j A: [388815]
        automated match to d1m4ul_
        complexed with cl, edo, gol, nag, so4
      2. 3033938Domain d6z3jb_: 6z3j B: [388825]
        automated match to d1m4ul_
        complexed with cl, edo, gol, nag, so4
    37. Domain for 6z3l:
    38. Domain for 7l0j:
  2. 3034003Mouse (Mus musculus) [TaxId:10090] [188989] (3 PDB entries)
    1. Domains for 3hh2:
      1. 3034005Domain d3hh2a_: 3hh2 A: [177565]
        automated match to d1s4yb_
        complexed with cit, po4
      2. 3034006Domain d3hh2b_: 3hh2 B: [177566]
        automated match to d1s4yb_
        complexed with cit, po4
    2. Domain for 3sek:
    3. Domains for 5ji1:
      1. 3034007Domain d5ji1a_: 5ji1 A: [331658]
        automated match to d3hh2a_
        complexed with mpd
      2. 3034008Domain d5ji1b_: 5ji1 B: [331627]
        automated match to d3hh2a_
        complexed with mpd
  3. 3034009Orf virus [TaxId:10259] [255191] (1 PDB entry)

More info for Protein automated matches from g.17.1.0: automated matches

Timeline for Protein automated matches from g.17.1.0: automated matches: