SCOPe 2.06: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.06
Class b: All beta proteins [48724] (177 folds)
Fold b.2: Common fold of diphtheria toxin/transcription factors/cytochrome f [49379] (9 superfamilies)
sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
Superfamily b.2.3: Bacterial adhesins [49401] (7 families)
Family b.2.3.0: automated matches [191391] (1 protein)
not a true family
Protein automated matches [190503] (6 species)
not a true protein

Species:

Bacillus cereus [TaxId:226900] [311336] (1 PDB entry)
- Domains for 3rkp:
  1. Domain d3rkpa2: 3rkp A:268-408 [306465]
    Other proteins in same PDB: d3rkpa1, d3rkpa3, d3rkpb1, d3rkpb3
    automated match to d3kpta3
  2. Domain d3rkpb2: 3rkp B:268-408 [306468]
    Other proteins in same PDB: d3rkpa1, d3rkpa3, d3rkpb1, d3rkpb3
    automated match to d3kpta3
Enterococcus faecalis [TaxId:1351] [188324] (1 PDB entry)
- Domain for 2okm:
  - Domain d2okma_: 2okm A: [166743]
    automated match to d1amxa_
    complexed with so4
Escherichia coli [TaxId:562] [187451] (5 PDB entries)
1. Domains for 2bcm:
  1. Domain d2bcma_: 2bcm A: [163041]
    automated match to d1rxla_
  2. Domain d2bcmb_: 2bcm B: [163042]
    automated match to d1rxla_
  3. Domain d2bcmc_: 2bcm C: [163043]
    automated match to d1rxla_
2. Domains for 4or1:
  1. Domain d4or1a1: 4or1 A:1-143 [268529]
    Other proteins in same PDB: d4or1a2, d4or1b2
    automated match to d4phxc_
    complexed with act, so4
  2. Domain d4or1b1: 4or1 B:1-143 [300088]
    Other proteins in same PDB: d4or1a2, d4or1b2
    automated match to d4or1a_
    complexed with act, so4
3. Domains for 4phx:
  1. Domain d4phxa1: 4phx A:1-120 [263487]
    Other proteins in same PDB: d4phxa2, d4phxb2, d4phxc2, d4phxd2, d4phxe2, d4phxf2, d4phxg2, d4phxh2
    automated match to d4phxc_
  2. Domain d4phxb1: 4phx B:1-120 [263488]
    Other proteins in same PDB: d4phxa2, d4phxb2, d4phxc2, d4phxd2, d4phxe2, d4phxf2, d4phxg2, d4phxh2
    automated match to d4phxc_
  3. Domain d4phxc1: 4phx C:1-119 [259923]
    Other proteins in same PDB: d4phxa2, d4phxb2, d4phxc2, d4phxd2, d4phxe2, d4phxf2, d4phxg2, d4phxh2
    automated match to d2axwb_
  4. Domain d4phxd1: 4phx D:1-119 [263489]
    Other proteins in same PDB: d4phxa2, d4phxb2, d4phxc2, d4phxd2, d4phxe2, d4phxf2, d4phxg2, d4phxh2
    automated match to d4phxc_
  5. Domain d4phxe1: 4phx E:1-123 [263490]
    Other proteins in same PDB: d4phxa2, d4phxb2, d4phxc2, d4phxd2, d4phxe2, d4phxf2, d4phxg2, d4phxh2
    automated match to d4phxc_
  6. Domain d4phxf1: 4phx F:1-120 [261547]
    Other proteins in same PDB: d4phxa2, d4phxb2, d4phxc2, d4phxd2, d4phxe2, d4phxf2, d4phxg2, d4phxh2
    automated match to d2axwb_
  7. Domain d4phxg1: 4phx G:1-120 [263491]
    Other proteins in same PDB: d4phxa2, d4phxb2, d4phxc2, d4phxd2, d4phxe2, d4phxf2, d4phxg2, d4phxh2
    automated match to d4phxc_
  8. Domain d4phxh1: 4phx H:1-131 [263492]
    Other proteins in same PDB: d4phxa2, d4phxb2, d4phxc2, d4phxd2, d4phxe2, d4phxf2, d4phxg2, d4phxh2
    automated match to d4phxc_
4. Domains for 5lne:
  1. Domain d5lnea_: 5lne A: [323709]
    Other proteins in same PDB: d5lneb2
    automated match to d4csta_
    complexed with a2g, gal, ni
  2. Domain d5lneb1: 5lne B:1-158 [323713]
    Other proteins in same PDB: d5lneb2
    automated match to d4csta_
    complexed with a2g, gal, ni
5. Domains for 5lng:
  1. Domain d5lnga_: 5lng A: [323722]
    automated match to d4csta_
    complexed with so4
  2. Domain d5lngb_: 5lng B: [323736]
    automated match to d4csta_
    complexed with so4
  3. Domain d5lngc_: 5lng C: [323705]
    automated match to d4csta_
    complexed with so4
  4. Domain d5lngd_: 5lng D: [323724]
    automated match to d4csta_
    complexed with so4
Shigella flexneri [TaxId:623] [343012] (1 PDB entry)
- Domain for 5lp9:
  - Domain d5lp9a_: 5lp9 A: [343013]
    automated match to d2uy7b1
Staphylococcus aureus [TaxId:158878] [336878] (1 PDB entry)
- Domains for 5wta:
  1. Domain d5wtaa1: 5wta A:272-418 [336879]
    automated match to d1r17a1
  2. Domain d5wtaa2: 5wta A:419-586 [336880]
    automated match to d1r17a2
  3. Domain d5wtab1: 5wta B:272-418 [336923]
    automated match to d1r17a1
  4. Domain d5wtab2: 5wta B:419-586 [336924]
    automated match to d1r17a2
  5. Domain d5wtac1: 5wta C:273-418 [336901]
    automated match to d1r17a1
  6. Domain d5wtac2: 5wta C:419-586 [336902]
    automated match to d1r17a2
  7. Domain d5wtad1: 5wta D:273-418 [336909]
    automated match to d1r17a1
  8. Domain d5wtad2: 5wta D:419-586 [336910]
    automated match to d1r17a2
Staphylococcus aureus [TaxId:282459] [331651] (1 PDB entry)
- Domains for 5ihw:
  1. Domain d5ihwa1: 5ihw A:278-423 [331652]
    automated match to d1r19a1
  2. Domain d5ihwa2: 5ihw A:424-591 [331653]
    automated match to d1r19a2

More info for Protein automated matches from b.2.3.0: automated matches

Timeline for Protein automated matches from b.2.3.0: automated matches:

Protein automated matches from b.2.3.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from b.2.3.0: automated matches appears in SCOPe 2.05
Protein automated matches from b.2.3.0: automated matches appears in SCOPe 2.07
Protein automated matches from b.2.3.0: automated matches appears in the current release, SCOPe 2.08