Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2767182Fold b.2: Common fold of diphtheria toxin/transcription factors/cytochrome f [49379] (9 superfamilies)
    sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
  4. 2767438Superfamily b.2.3: Bacterial adhesins [49401] (7 families) (S)
  5. 2767842Family b.2.3.0: automated matches [191391] (1 protein)
    not a true family
  6. 2767843Protein automated matches [190503] (10 species)
    not a true protein

Species:

  1. 2767844Bacillus cereus [TaxId:226900] [311336] (1 PDB entry)
  2. 2767847Enterococcus faecalis [TaxId:1351] [188324] (1 PDB entry)
  3. 2767849Escherichia coli [TaxId:364106] [349115] (10 PDB entries)
    1. Domains for 6aow:
      1. 2767858Domain d6aowa_: 6aow A: [349116]
        automated match to d4xocb_
        complexed with so4
      2. 2767859Domain d6aowb_: 6aow B: [349119]
        automated match to d4xocb_
        complexed with so4
    2. Domains for 6aox:
      1. 2767865Domain d6aoxa_: 6aox A: [349370]
        automated match to d4xocb_
        complexed with a2g, gal
      2. 2767866Domain d6aoxb_: 6aox B: [349170]
        automated match to d4xocb_
        complexed with a2g, gal
    3. Domains for 6aoy:
      1. 2767860Domain d6aoya_: 6aoy A: [349163]
        automated match to d4xocb_
        complexed with 145, so4
      2. 2767861Domain d6aoyb_: 6aoy B: [349123]
        automated match to d4xocb_
        complexed with 145, so4
    4. Domains for 6arm:
      1. 2767856Domain d6arma_: 6arm A: [349121]
        automated match to d4xocb_
        complexed with 145, so4
      2. 2767857Domain d6armb_: 6arm B: [349148]
        automated match to d4xocb_
        complexed with 145, so4
    5. Domains for 6arn:
      1. 2767853Domain d6arna_: 6arn A: [349117]
        automated match to d4xocb_
        complexed with bqy, so4
      2. 2767854Domain d6arnb_: 6arn B: [349188]
        automated match to d4xocb_
        complexed with bqy, so4
    6. Domains for 6aro:
      1. 2767851Domain d6aroa_: 6aro A: [349132]
        automated match to d4xocb_
        complexed with bs7, so4
      2. 2767852Domain d6arob_: 6aro B: [349178]
        automated match to d4xocb_
        complexed with bs7, so4
    7. Domains for 6as8:
      1. 2767863Domain d6as8a_: 6as8 A: [349199]
        automated match to d4xocb_
        complexed with btg
      2. 2767864Domain d6as8b_: 6as8 B: [349217]
        automated match to d4xocb_
        complexed with btg
    8. Domain for 6map:
    9. Domain for 6maq:
    10. Domain for 6maw:
  4. 2767867Escherichia coli [TaxId:562] [187451] (6 PDB entries)
    1. Domains for 2bcm:
      1. 2767868Domain d2bcma_: 2bcm A: [163041]
        automated match to d1rxla_
      2. 2767869Domain d2bcmb_: 2bcm B: [163042]
        automated match to d1rxla_
      3. 2767870Domain d2bcmc_: 2bcm C: [163043]
        automated match to d1rxla_
    2. Domains for 4or1:
      1. 2767886Domain d4or1a1: 4or1 A:1-143 [268529]
        Other proteins in same PDB: d4or1a2, d4or1b2
        automated match to d4phxc_
        complexed with act, so4
      2. 2767887Domain d4or1b1: 4or1 B:1-143 [300088]
        Other proteins in same PDB: d4or1a2, d4or1b2
        automated match to d4or1a_
        complexed with act, so4
    3. Domains for 4phx:
      1. 2767878Domain d4phxa1: 4phx A:1-120 [263487]
        Other proteins in same PDB: d4phxa2, d4phxb2, d4phxc2, d4phxd2, d4phxe2, d4phxf2, d4phxg2, d4phxh2
        automated match to d4phxc_
      2. 2767879Domain d4phxb1: 4phx B:1-120 [263488]
        Other proteins in same PDB: d4phxa2, d4phxb2, d4phxc2, d4phxd2, d4phxe2, d4phxf2, d4phxg2, d4phxh2
        automated match to d4phxc_
      3. 2767880Domain d4phxc1: 4phx C:1-119 [259923]
        Other proteins in same PDB: d4phxa2, d4phxb2, d4phxc2, d4phxd2, d4phxe2, d4phxf2, d4phxg2, d4phxh2
        automated match to d2axwb_
      4. 2767881Domain d4phxd1: 4phx D:1-119 [263489]
        Other proteins in same PDB: d4phxa2, d4phxb2, d4phxc2, d4phxd2, d4phxe2, d4phxf2, d4phxg2, d4phxh2
        automated match to d4phxc_
      5. 2767882Domain d4phxe1: 4phx E:1-123 [263490]
        Other proteins in same PDB: d4phxa2, d4phxb2, d4phxc2, d4phxd2, d4phxe2, d4phxf2, d4phxg2, d4phxh2
        automated match to d4phxc_
      6. 2767883Domain d4phxf1: 4phx F:1-120 [261547]
        Other proteins in same PDB: d4phxa2, d4phxb2, d4phxc2, d4phxd2, d4phxe2, d4phxf2, d4phxg2, d4phxh2
        automated match to d2axwb_
      7. 2767884Domain d4phxg1: 4phx G:1-120 [263491]
        Other proteins in same PDB: d4phxa2, d4phxb2, d4phxc2, d4phxd2, d4phxe2, d4phxf2, d4phxg2, d4phxh2
        automated match to d4phxc_
      8. 2767885Domain d4phxh1: 4phx H:1-131 [263492]
        Other proteins in same PDB: d4phxa2, d4phxb2, d4phxc2, d4phxd2, d4phxe2, d4phxf2, d4phxg2, d4phxh2
        automated match to d4phxc_
    4. Domains for 5lne:
      1. 2767871Domain d5lnea_: 5lne A: [323709]
        Other proteins in same PDB: d5lneb2
        automated match to d4csta_
        complexed with ni
      2. 2767872Domain d5lneb1: 5lne B:1-158 [323713]
        Other proteins in same PDB: d5lneb2
        automated match to d4csta_
        complexed with ni
    5. Domains for 5lng:
      1. 2767873Domain d5lnga_: 5lng A: [323722]
        automated match to d4csta_
        complexed with so4
      2. 2767874Domain d5lngb_: 5lng B: [323736]
        automated match to d4csta_
        complexed with so4
      3. 2767875Domain d5lngc_: 5lng C: [323705]
        automated match to d4csta_
        complexed with so4
      4. 2767876Domain d5lngd_: 5lng D: [323724]
        automated match to d4csta_
        complexed with so4
    6. Domain for 6y7s:
  5. 2767888Escherichia coli [TaxId:83333] [346217] (6 PDB entries)
    1. Domain for 2m5g:
    2. Domains for 3jwn:
      1. 2767891Domain d3jwne_: 3jwn E: [343811]
        Other proteins in same PDB: d3jwnc1, d3jwnc2, d3jwnh1, d3jwnh2, d3jwni1, d3jwni2, d3jwnn1, d3jwnn2
        automated match to d5lp9a_
        complexed with gol
      2. 2767892Domain d3jwnf_: 3jwn F: [343812]
        Other proteins in same PDB: d3jwnc1, d3jwnc2, d3jwnh1, d3jwnh2, d3jwni1, d3jwni2, d3jwnn1, d3jwnn2
        automated match to d5lp9a_
        complexed with gol
      3. 2767893Domain d3jwnk_: 3jwn K: [408431]
        Other proteins in same PDB: d3jwnc1, d3jwnc2, d3jwnh1, d3jwnh2, d3jwni1, d3jwni2, d3jwnn1, d3jwnn2
        automated match to d3jwne_
        complexed with gol
      4. 2767894Domain d3jwnl_: 3jwn L: [408432]
        Other proteins in same PDB: d3jwnc1, d3jwnc2, d3jwnh1, d3jwnh2, d3jwni1, d3jwni2, d3jwnn1, d3jwnn2
        automated match to d3jwne_
        complexed with gol
    3. Domain for 5nkt:
    4. Domain for 6r74:
    5. Domains for 6swh:
      1. 2767895Domain d6swhb_: 6swh B: [391892]
        Other proteins in same PDB: d6swha1, d6swha2, d6swhd1, d6swhd2
        automated match to d5lp9a_
        complexed with edo, peg
      2. 2767896Domain d6swhc_: 6swh C: [411827]
        Other proteins in same PDB: d6swha1, d6swha2, d6swhd1, d6swhd2
        automated match to d5nkta_
        complexed with edo, peg
      3. 2767897Domain d6swhe_: 6swh E: [391695]
        Other proteins in same PDB: d6swha1, d6swha2, d6swhd1, d6swhd2
        automated match to d5lp9a_
        complexed with edo, peg
      4. 2767898Domain d6swhf_: 6swh F: [411828]
        Other proteins in same PDB: d6swha1, d6swha2, d6swhd1, d6swhd2
        automated match to d5nkta_
        complexed with edo, peg
    6. Domains for 6y7s:
      1. 2767899Domain d6y7sa_: 6y7s A: [402803]
        automated match to d2m5ga_
      2. 2767900Domain d6y7sb_: 6y7s B: [402765]
        automated match to d2m5ga_
      3. 2767901Domain d6y7sd_: 6y7s D: [402793]
        automated match to d2m5ga_
      4. 2767902Domain d6y7se_: 6y7s E: [402756]
        automated match to d2m5ga_
      5. 2767903Domain d6y7sf_: 6y7s F: [402761]
        automated match to d2m5ga_
  6. 2767905Salmonella paratyphi [TaxId:295319] [363246] (1 PDB entry)
  7. 2767908Shigella flexneri [TaxId:623] [343012] (1 PDB entry)
  8. 2767910Staphylococcus aureus [TaxId:1280] [346218] (1 PDB entry)
  9. 2767912Staphylococcus aureus [TaxId:158878] [336878] (2 PDB entries)
    1. Domain for 5cf3:
    2. Domains for 5wta:
      1. 2767914Domain d5wtaa1: 5wta A:272-418 [336879]
        automated match to d1r17a1
      2. 2767915Domain d5wtaa2: 5wta A:419-586 [336880]
        automated match to d1r17a2
      3. 2767916Domain d5wtab1: 5wta B:272-418 [336923]
        automated match to d1r17a1
      4. 2767917Domain d5wtab2: 5wta B:419-586 [336924]
        automated match to d1r17a2
      5. 2767918Domain d5wtac1: 5wta C:273-418 [336901]
        automated match to d1r17a1
      6. 2767919Domain d5wtac2: 5wta C:419-586 [336902]
        automated match to d1r17a2
      7. 2767920Domain d5wtad1: 5wta D:273-418 [336909]
        automated match to d1r17a1
      8. 2767921Domain d5wtad2: 5wta D:419-586 [336910]
        automated match to d1r17a2
  10. 2767922Staphylococcus aureus [TaxId:282459] [331651] (1 PDB entry)

More info for Protein automated matches from b.2.3.0: automated matches

Timeline for Protein automated matches from b.2.3.0: automated matches: