Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2315782Fold a.26: 4-helical cytokines [47265] (1 superfamily)
    core: 4 helices; bundle, closed; left-handed twist; 2 crossover connections
  4. 2315783Superfamily a.26.1: 4-helical cytokines [47266] (4 families) (S)
    there are two different topoisomers of this fold with different entanglements of the two crossover connections
  5. 2315881Family a.26.1.2: Short-chain cytokines [47286] (14 proteins)
  6. 2316037Protein automated matches [190501] (4 species)
    not a true protein

Species:

  1. 2316038Human (Homo sapiens) [TaxId:9606] [187448] (22 PDB entries)
    1. Domain for 1blw:
    2. Domain for 2b8x:
    3. Domain for 2b8y:
    4. Domain for 2b8z:
    5. Domain for 2b90:
    6. Domain for 2b91:
    7. Domain for 2d48:
    8. Domain for 2xqb:
    9. Domains for 3qt2:
      1. 2316068Domain d3qt2c_: 3qt2 C: [184613]
        automated match to d1hula_
        complexed with bgc, mpd
      2. 2316069Domain d3qt2d_: 3qt2 D: [184614]
        automated match to d1hula_
        complexed with bgc, mpd
      3. 2316070Domain d3qt2e_: 3qt2 E: [184615]
        automated match to d1hula_
        complexed with bgc, mpd
      4. 2316071Domain d3qt2f_: 3qt2 F: [184616]
        automated match to d1hula_
        complexed with bgc, mpd
    10. Domains for 3uf2:
      1. 2316046Domain d3uf2a_: 3uf2 A: [200970]
        automated match to d3uf2i_
      2. 2316047Domain d3uf2b_: 3uf2 B: [200971]
        automated match to d3uf2i_
      3. 2316048Domain d3uf2c_: 3uf2 C: [200972]
        automated match to d3uf2i_
      4. 2316049Domain d3uf2d_: 3uf2 D: [200973]
        automated match to d3uf2i_
      5. 2316050Domain d3uf2e_: 3uf2 E: [200974]
        automated match to d3uf2i_
      6. 2316051Domain d3uf2f_: 3uf2 F: [200975]
        automated match to d3uf2i_
      7. 2316052Domain d3uf2g_: 3uf2 G: [200976]
        automated match to d3uf2i_
      8. 2316053Domain d3uf2h_: 3uf2 H: [200977]
        automated match to d3uf2i_
      9. 2316054Domain d3uf2i_: 3uf2 I: [193558]
        automated match to d1hmca_
      10. 2316055Domain d3uf2j_: 3uf2 J: [200978]
        automated match to d3uf2i_
    11. Domains for 3va2:
      1. 2316063Domain d3va2a_: 3va2 A: [201212]
        automated match to d3va2b_
      2. 2316064Domain d3va2b_: 3va2 B: [193617]
        automated match to d3qt2c_
    12. Domains for 4fa8:
      1. 2316056Domain d4fa8e1: 4fa8 E:4-146 [193550]
        Other proteins in same PDB: d4fa8e2, d4fa8f2, d4fa8g2
        automated match to d1hmca_
        complexed with nag
      2. 2316057Domain d4fa8f1: 4fa8 F:4-147 [202023]
        Other proteins in same PDB: d4fa8e2, d4fa8f2, d4fa8g2
        automated match to d4fa8g_
        complexed with nag
      3. 2316058Domain d4fa8g1: 4fa8 G:4-148 [193551]
        Other proteins in same PDB: d4fa8e2, d4fa8f2, d4fa8g2
        automated match to d1hmca_
        complexed with nag
    13. Domain for 4nej:
    14. Domain for 4nem:
    15. Domains for 4wrl:
      1. 2316072Domain d4wrlb_: 4wrl B: [276040]
        automated match to d3uf5a_
        complexed with fuc, gal, nag, sia
      2. 2316073Domain d4wrld_: 4wrl D: [276043]
        automated match to d3uf5a_
        complexed with fuc, gal, nag, sia
    16. Domain for 5lqb:
    17. Domains for 5lxf:
      1. 2316059Domain d5lxfa_: 5lxf A: [336563]
        automated match to d1hmca_
      2. 2316060Domain d5lxfb_: 5lxf B: [336579]
        automated match to d1hmca_
    18. Domain for 5m5e:
    19. Domains for 5uv8:
      1. 3047672Domain d5uv8i_: 5uv8 I: [347734]
        automated match to d1jlia_
        complexed with bma, fuc, gol, nag
      2. 3047699Domain d5uv8b_: 5uv8 B: [347761]
        automated match to d1jlia_
        complexed with bma, fuc, gol, nag
    20. Domain for 5uwc:
    21. Domains for 6bfq:
      1. 3057274Domain d6bfqk1: 6bfq K:19-110 [357336]
        Other proteins in same PDB: d6bfqb1, d6bfqb2, d6bfqd1, d6bfqd2, d6bfqf1, d6bfqf2, d6bfqg2, d6bfqi2, d6bfqj2, d6bfqk2, d6bfql1, d6bfql2
        automated match to d5d22b_
      2. 3057300Domain d6bfqi1: 6bfq I:23-110 [357362]
        Other proteins in same PDB: d6bfqb1, d6bfqb2, d6bfqd1, d6bfqd2, d6bfqf1, d6bfqf2, d6bfqg2, d6bfqi2, d6bfqj2, d6bfqk2, d6bfql1, d6bfql2
        automated match to d5d22b_
      3. 3057306Domain d6bfqg1: 6bfq G:23-110 [357368]
        Other proteins in same PDB: d6bfqb1, d6bfqb2, d6bfqd1, d6bfqd2, d6bfqf1, d6bfqf2, d6bfqg2, d6bfqi2, d6bfqj2, d6bfqk2, d6bfql1, d6bfql2
        automated match to d5d22b_
      4. 3057332Domain d6bfqj1: 6bfq J:19-110 [357394]
        Other proteins in same PDB: d6bfqb1, d6bfqb2, d6bfqd1, d6bfqd2, d6bfqf1, d6bfqf2, d6bfqg2, d6bfqi2, d6bfqj2, d6bfqk2, d6bfql1, d6bfql2
        automated match to d5d22b_
    22. Domain for 6bfs:
  2. 2316074Mouse (Mus musculus) [TaxId:10090] [187941] (5 PDB entries)
    1. Domains for 2o26:
      1. 2316081Domain d2o26a1: 2o26 A:3-141 [166496]
        Other proteins in same PDB: d2o26a2
        automated match to d1exzb_
      2. 2316082Domain d2o26b_: 2o26 B: [166497]
        Other proteins in same PDB: d2o26a2
        automated match to d1exzb_
      3. 2316083Domain d2o26e_: 2o26 E: [166498]
        Other proteins in same PDB: d2o26a2
        automated match to d1exzb_
      4. 2316084Domain d2o26f_: 2o26 F: [166499]
        Other proteins in same PDB: d2o26a2
        automated match to d1exzb_
    2. Domains for 2o27:
      1. 2316075Domain d2o27a_: 2o27 A: [166500]
        automated match to d1exzb_
      2. 2316076Domain d2o27b_: 2o27 B: [166501]
        automated match to d1exzb_
    3. Domains for 3b5k:
      1. 2316085Domain d3b5ka_: 3b5k A: [172432]
        automated match to d1hula_
      2. 2316086Domain d3b5kb_: 3b5k B: [172433]
        automated match to d1hula_
    4. Domains for 3ejj:
      1. 2316079Domain d3ejja1: 3ejj A:4-148 [174984]
        Other proteins in same PDB: d3ejja2
        automated match to d1hmca_
      2. 2316080Domain d3ejjb_: 3ejj B: [174985]
        Other proteins in same PDB: d3ejja2
        automated match to d1hmca_
    5. Domains for 3uf5:
      1. 2316077Domain d3uf5a_: 3uf5 A: [194779]
        automated match to d3ejja_
        complexed with ca
      2. 2316078Domain d3uf5b_: 3uf5 B: [194778]
        automated match to d3ejja_
        complexed with ca
  3. 2316087Mustela putorius [TaxId:9669] [279075] (1 PDB entry)
  4. 2316090Sheep (Ovis aries) [TaxId:9940] [326182] (2 PDB entries)
    1. Domains for 5d22:
      1. 2316091Domain d5d22a_: 5d22 A: [326185]
        automated match to d4rs1a_
        complexed with act, edo
      2. 2316092Domain d5d22b_: 5d22 B: [326183]
        automated match to d4rs1a_
        complexed with act, edo
    2. Domains for 5d28:
      1. 2316093Domain d5d28b_: 5d28 B: [326184]
        automated match to d4rs1a_
        complexed with bma, man, nag, so4
      2. 2316094Domain d5d28c_: 5d28 C: [326221]
        automated match to d4rs1a_
        complexed with bma, man, nag, so4

More info for Protein automated matches from a.26.1.2: Short-chain cytokines

Timeline for Protein automated matches from a.26.1.2: Short-chain cytokines: