Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. Class b: All beta proteins [48724] (180 folds)
  3. Fold b.7: C2 domain-like [49561] (5 superfamilies)
    sandwich; 8 strands in 2 sheets; greek-key
  4. Superfamily b.7.1: C2 domain (Calcium/lipid-binding domain, CaLB) [49562] (4 families) (S)
    two constituent families are related by circular permutation
  5. Family b.7.1.0: automated matches [191388] (1 protein)
    not a true family
  6. Protein automated matches [190497] (4 species)
    not a true protein

Species:

  1. Fruit fly (Drosophila melanogaster) [TaxId:7227] [274511] (1 PDB entry)
  2. Human (Homo sapiens) [TaxId:9606] [188711] (30 PDB entries)
    1. Domain for 2d8k:
    2. Domain for 2dmg:
    3. Domain for 2enj:
    4. Domain for 2enp:
    5. Domain for 2fk9:
    6. Domain for 2nsq:
    7. Domains for 3b7y:
      1. Domain d3b7ya_: 3b7y A: [208556]
        automated match to d3kwta_
        complexed with ca
      2. Domain d3b7yb_: 3b7y B: [208557]
        automated match to d3kwta_
        complexed with ca
    8. Domain for 3dbs:
    9. Domains for 3fbk:
      1. Domain d3fbka_: 3fbk A: [175663]
        automated match to d1dsya_
        complexed with so4
      2. Domain d3fbkb_: 3fbk B: [175664]
        automated match to d1dsya_
        complexed with so4
    10. Domains for 3fdw:
      1. Domain d3fdwa_: 3fdw A: [232160]
        automated match to d1v27a_
      2. Domain d3fdwb_: 3fdw B: [232159]
        automated match to d1v27a_
    11. Domain for 3zvv:
    12. Domain for 4anu:
    13. Domain for 4anv:
    14. Domain for 4anw:
    15. Domain for 4anx:
    16. Domain for 4hle:
    17. Domain for 4j6i:
    18. Domain for 4mjj:
    19. Domain for 4urk:
    20. Domain for 5g55:
    21. Domain for 5h4y:
    22. Domains for 5h4z:
      1. Domain d5h4za_: 5h4z A: [326674]
        automated match to d1w15a_
        complexed with ca, cl; mutant
      2. Domain d5h4zb_: 5h4z B: [326692]
        automated match to d1w15a_
        complexed with ca, cl; mutant
    23. Domains for 5r68:
      1. Domain d5r68a_: 5r68 A: [415447]
        automated match to d3fk3a_
        complexed with edo, ryd
      2. Domain d5r68b_: 5r68 B: [415448]
        automated match to d3fk3a_
        complexed with edo, ryd
    24. Domains for 5r69:
      1. Domain d5r69b_: 5r69 B: [415450]
        automated match to d3fk3a_
        complexed with edo, zha
      2. Domain d5r69a_: 5r69 A: [415449]
        automated match to d3fk3a_
        complexed with edo, zha
    25. Domains for 5vna:
      1. Domain d5vnab_: 5vna B: [415522]
        automated match to d3fk3a_
        complexed with edo, nhe, so4
      2. Domain d5vnad_: 5vna D: [415524]
        automated match to d3fk3a_
        complexed with edo, nhe, so4
      3. Domain d5vnac_: 5vna C: [415523]
        automated match to d3fk3a_
        complexed with edo, nhe, so4
      4. Domain d5vnaa_: 5vna A: [415521]
        automated match to d3fk3a_
        complexed with edo, nhe, so4
    26. Domains for 5y8v:
      1. Domain d5y8va_: 5y8v A: [415582]
        automated match to d3fk3a_
        complexed with mg
      2. Domain d5y8vc_: 5y8v C: [415584]
        automated match to d3fk3a_
        complexed with mg
      3. Domain d5y8vb_: 5y8v B: [415583]
        automated match to d3fk3a_
        complexed with mg
      4. Domain d5y8vd_: 5y8v D: [415585]
        automated match to d3fk3a_
        complexed with mg
    27. Domains for 6bty:
      1. Domain d6btya_: 6bty A: [359016]
        Other proteins in same PDB: d6btyb2
        automated match to d1rh8a_
        complexed with o4b
      2. Domain d6btyb1: 6bty B:1559-1683 [358808]
        Other proteins in same PDB: d6btyb2
        automated match to d1rh8a_
        complexed with o4b
    28. Domains for 6btz:
      1. Domain d6btza_: 6btz A: [358809]
        automated match to d1rh8a_
        complexed with gol, o4b, so4
      2. Domain d6btzb_: 6btz B: [358861]
        automated match to d1rh8a_
        complexed with gol, o4b, so4
      3. Domain d6btzc_: 6btz C: [358945]
        automated match to d1rh8a_
        complexed with gol, o4b, so4
      4. Domain d6btzd_: 6btz D: [359105]
        automated match to d1rh8a_
        complexed with gol, o4b, so4
    29. Domains for 6bu0:
      1. Domain d6bu0a_: 6bu0 A: [358841]
        Other proteins in same PDB: d6bu0b2, d6bu0c2
        automated match to d1rh8a_
        complexed with fmt, ihp, o4b
      2. Domain d6bu0b1: 6bu0 B:1559-1683 [359099]
        Other proteins in same PDB: d6bu0b2, d6bu0c2
        automated match to d1rh8a_
        complexed with fmt, ihp, o4b
      3. Domain d6bu0c1: 6bu0 C:1559-1684 [358810]
        Other proteins in same PDB: d6bu0b2, d6bu0c2
        automated match to d1rh8a_
        complexed with fmt, ihp, o4b
    30. Domains for 7jfy:
      1. Domain d7jfyb_: 7jfy B: [418161]
        automated match to d3fk3a_
        complexed with dms, edo, v91
      2. Domain d7jfyc_: 7jfy C: [418162]
        automated match to d3fk3a_
        complexed with dms, edo, v91
      3. Domain d7jfya_: 7jfy A: [418160]
        automated match to d3fk3a_
        complexed with dms, edo, v91
      4. Domain d7jfyd_: 7jfy D: [418163]
        automated match to d3fk3a_
        complexed with dms, edo, v91
  3. Mouse (Mus musculus) [TaxId:10090] [187441] (4 PDB entries)
    1. Domains for 2b3r:
      1. Domain d2b3ra1: 2b3r A:1384-1505 [162989]
        Other proteins in same PDB: d2b3ra2, d2b3rb2
        automated match to d2bwqa1
        complexed with so4
      2. Domain d2b3rb1: 2b3r B:1384-1505 [162990]
        Other proteins in same PDB: d2b3ra2, d2b3rb2
        automated match to d2bwqa1
        complexed with so4
    2. Domain for 2k3h:
    3. Domain for 3n5a:
    4. Domain for 6lcy:
  4. Norway rat (Rattus norvegicus) [TaxId:10116] [189223] (10 PDB entries)
    1. Domain for 2chd:
    2. Domains for 4lcv:
      1. Domain d4lcva_: 4lcv A: [235325]
        Other proteins in same PDB: d4lcvb2
        automated match to d4lcvd_
        complexed with bme, ca, flc, so4
      2. Domain d4lcvb1: 4lcv B:125-254 [235326]
        Other proteins in same PDB: d4lcvb2
        automated match to d4lcvd_
        complexed with bme, ca, flc, so4
      3. Domain d4lcvc_: 4lcv C: [235324]
        Other proteins in same PDB: d4lcvb2
        automated match to d4lcvd_
        complexed with bme, ca, flc, so4
      4. Domain d4lcvd_: 4lcv D: [227893]
        Other proteins in same PDB: d4lcvb2
        automated match to d2chda_
        complexed with bme, ca, flc, so4
    3. Domain for 4ldc:
    4. Domain for 4lt7:
    5. Domain for 4np9:
    6. Domain for 4ns0:
    7. Domain for 6anj:
    8. Domains for 6ank:
      1. Domain d6anka1: 6ank A:135-259 [339050]
        automated match to d2k8ma1
        complexed with ca, edo
      2. Domain d6anka2: 6ank A:266-402 [339051]
        automated match to d2k8ma1
        complexed with ca, edo
      3. Domain d6ankb1: 6ank B:135-259 [344476]
        automated match to d6anka1
        complexed with ca, edo
      4. Domain d6ankb2: 6ank B:266-403 [344477]
        automated match to d6anka2
        complexed with ca, edo
    9. Domain for 6nyc:
    10. Domain for 6nyt:

More info for Protein automated matches from b.7.1.0: automated matches

Timeline for Protein automated matches from b.7.1.0: automated matches: