SCOPe 2.07: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.07
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.77: Isocitrate/Isopropylmalate dehydrogenase-like [53658] (1 superfamily)
consists of two intertwined (sub)domains related by pseudo dyad; duplication
3 layers: a/b/a; single mixed beta-sheet of 10 strands, order 213A945867 (A=10); strands from 5 to 9 are antiparallel to the rest

Superfamily c.77.1: Isocitrate/Isopropylmalate dehydrogenase-like [53659] (6 families)
the constituent families form similar dimers

Family c.77.1.2: Monomeric isocitrate dehydrogenase [82526] (2 proteins)
the active site is contained within one subunit between the canonical ICDH fold and a large insert domain that itself is a probable rudiment form of ICDH fold resulted from duplication, domain swapping and deletion
automatically mapped to Pfam PF03971

Protein automated matches [190493] (6 species)
not a true protein

Species:

Acinetobacter baumannii [TaxId:470] [365215] (1 PDB entry)
- Domains for 5z16:
  1. Domain d5z16a_: 5z16 A: [365216]
    automated match to d5kvua_
    complexed with mg, po4
  2. Domain d5z16b_: 5z16 B: [365218]
    automated match to d5kvua_
    complexed with mg, po4
Corynebacterium glutamicum [TaxId:1718] [187435] (1 PDB entry)
- Domain for 2b0t:
  - Domain d2b0ta_: 2b0t A: [162961]
    automated match to d1itwa_
    complexed with mg
Corynebacterium glutamicum [TaxId:196627] [189781] (1 PDB entry)
- Domains for 3mbc:
  1. Domain d3mbca_: 3mbc A: [180995]
    automated match to d1itwa_
    complexed with mg, nap
  2. Domain d3mbcb_: 3mbc B: [180996]
    automated match to d1itwa_
    complexed with mg, nap
Mycobacterium smegmatis [TaxId:1772] [319123] (1 PDB entry)
- Domains for 4zda:
  1. Domain d4zdaa_: 4zda A: [319201]
    automated match to d2b0ta_
    complexed with ict, mn
  2. Domain d4zdab_: 4zda B: [319124]
    automated match to d2b0ta_
    complexed with ict, mn
  3. Domain d4zdac_: 4zda C: [319174]
    automated match to d2b0ta_
    complexed with ict, mn
  4. Domain d4zdad_: 4zda D: [319192]
    automated match to d2b0ta_
    complexed with ict, mn
  5. Domain d4zdae_: 4zda E: [319133]
    automated match to d2b0ta_
    complexed with ict, mn
  6. Domain d4zdaf_: 4zda F: [319180]
    automated match to d2b0ta_
    complexed with ict, mn
Mycobacterium tuberculosis [TaxId:83332] [336802] (1 PDB entry)
- Domains for 5kvu:
  1. Domain d5kvua_: 5kvu A: [336803]
    automated match to d2b0ta_
    complexed with edo, gol, mla, mlt, nap, sin
  2. Domain d5kvub_: 5kvu B: [336914]
    automated match to d2b0ta_
    complexed with edo, gol, mla, mlt, nap, sin
  3. Domain d5kvuc_: 5kvu C: [336925]
    automated match to d2b0ta_
    complexed with edo, gol, mla, mlt, nap, sin
  4. Domain d5kvud_: 5kvu D: [336917]
    automated match to d2b0ta_
    complexed with edo, gol, mla, mlt, nap, sin
Pseudomonas aeruginosa [TaxId:287] [355639] (1 PDB entry)
- Domains for 6g3u:
  1. Domain d6g3ua_: 6g3u A: [355640]
    automated match to d2b0ta_
    complexed with akg, nap
  2. Domain d6g3ub_: 6g3u B: [355645]
    automated match to d2b0ta_
    complexed with akg, nap

More info for Protein automated matches from c.77.1.2: Monomeric isocitrate dehydrogenase

Timeline for Protein automated matches from c.77.1.2: Monomeric isocitrate dehydrogenase:

Protein automated matches from c.77.1.2: Monomeric isocitrate dehydrogenase first appeared in SCOPe 2.01
Protein automated matches from c.77.1.2: Monomeric isocitrate dehydrogenase appears in SCOPe 2.06
Protein automated matches from c.77.1.2: Monomeric isocitrate dehydrogenase appears in the current release, SCOPe 2.08