Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2508201Fold d.21: Diaminopimelate epimerase-like [54505] (1 superfamily)
    mixed beta-sheet folds into a barrel (n=8, S=14) around the central helix
  4. 2508202Superfamily d.21.1: Diaminopimelate epimerase-like [54506] (5 families) (S)
    duplication: consists of two similar domain swapped with C-terminal strands
  5. 2508316Family d.21.1.0: automated matches [191386] (1 protein)
    not a true family
  6. 2508317Protein automated matches [190491] (15 species)
    not a true protein

Species:

  1. 2508318Acinetobacter baumannii [TaxId:557600] [314639] (1 PDB entry)
  2. 2508323Agrobacterium radiobacter [TaxId:311403] [257598] (1 PDB entry)
  3. 2508326Agrobacterium vitis [TaxId:311402] [226728] (2 PDB entries)
    1. Domains for 4k7g:
      1. 2508329Domain d4k7gb_: 4k7g B: [235110]
        Other proteins in same PDB: d4k7gd2
        automated match to d4lb0b_
        complexed with act, cit, pyc
      2. 2508330Domain d4k7gd1: 4k7g D:1-342 [240401]
        Other proteins in same PDB: d4k7gd2
        automated match to d4k7gb_
        complexed with act, cit, pyc
    2. Domains for 4lb0:
      1. 2508327Domain d4lb0a_: 4lb0 A: [224623]
        Other proteins in same PDB: d4lb0b2
        automated match to d4k8la_
        complexed with act, hyp
      2. 2508328Domain d4lb0b1: 4lb0 B:1-346 [224624]
        Other proteins in same PDB: d4lb0b2
        automated match to d4k8la_
        complexed with act, hyp
  4. 2508331Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [225536] (1 PDB entry)
  5. 2508336Burkholderia multivorans [TaxId:395019] [226654] (2 PDB entries)
    1. Domain for 4k7x:
    2. Domains for 4q60:
      1. 2508338Domain d4q60a1: 4q60 A:2-310 [257619]
        Other proteins in same PDB: d4q60a2, d4q60b2
        automated match to d4k7gd_
        complexed with gol, pyc
      2. 2508339Domain d4q60b1: 4q60 B:2-310 [257620]
        Other proteins in same PDB: d4q60a2, d4q60b2
        automated match to d4k7gd_
        complexed with gol, pyc
  6. 2508340Chromohalobacter salexigens [TaxId:290398] [234963] (1 PDB entry)
  7. 2508343Clostridium difficile [TaxId:272563] [195841] (1 PDB entry)
  8. 2508345Eubacterium barkeri [TaxId:1528] [225714] (1 PDB entry)
  9. 2508354Pseudomonas aeruginosa [TaxId:287] [187433] (1 PDB entry)
  10. 2508356Pseudomonas protegens [TaxId:220664] [234939] (2 PDB entries)
    1. Domains for 4j9w:
      1. 2508357Domain d4j9wa_: 4j9w A: [234940]
        automated match to d2azpa_
        complexed with gol, na, pyc
      2. 2508358Domain d4j9wb_: 4j9w B: [234941]
        automated match to d2azpa_
        complexed with gol, na, pyc
    2. Domains for 4j9x:
      1. 2508359Domain d4j9xa_: 4j9x A: [240289]
        automated match to d4j9wa_
        complexed with hyp, na
      2. 2508360Domain d4j9xb_: 4j9x B: [234942]
        automated match to d2azpa_
        complexed with hyp, na
  11. 2508361Pseudomonas putida [TaxId:351746] [226612] (2 PDB entries)
    1. Domain for 4jbd:
    2. Domains for 4jd7:
      1. 2508363Domain d4jd7a1: 4jd7 A:1-308 [223749]
        Other proteins in same PDB: d4jd7a2, d4jd7d2
        automated match to d2azpa_
        complexed with so4
      2. 2508364Domain d4jd7d1: 4jd7 D:1-308 [223750]
        Other proteins in same PDB: d4jd7a2, d4jd7d2
        automated match to d2azpa_
        complexed with so4
  12. 2508365Shewanella oneidensis [TaxId:211586] [334856] (1 PDB entry)
  13. 2508367Shewanella oneidensis [TaxId:70863] [225314] (3 PDB entries)
    1. Domains for 2pvz:
      1. 2508371Domain d2pvza1: 2pvz A:5-185 [205656]
        automated match to d2h9fa1
        complexed with ca, edo
      2. 2508372Domain d2pvza2: 2pvz A:186-397 [205657]
        automated match to d2h9fa2
        complexed with ca, edo
      3. 2508373Domain d2pvzb1: 2pvz B:5-185 [205658]
        automated match to d2h9fa1
        complexed with ca, edo
      4. 2508374Domain d2pvzb2: 2pvz B:186-397 [205659]
        automated match to d2h9fa2
        complexed with ca, edo
    2. Domains for 2pw0:
      1. 2508375Domain d2pw0a1: 2pw0 A:6-185 [205660]
        automated match to d2h9fa1
        complexed with edo, trc
      2. 2508376Domain d2pw0a2: 2pw0 A:186-397 [205661]
        automated match to d2h9fa2
        complexed with edo, trc
      3. 2508377Domain d2pw0b1: 2pw0 B:5-185 [205662]
        automated match to d2h9fa1
        complexed with edo, trc
      4. 2508378Domain d2pw0b2: 2pw0 B:186-397 [205663]
        automated match to d2h9fa2
        complexed with edo, trc
    3. Domains for 5k87:
      1. 2508368Domain d5k87a2: 5k87 A:186-397 [334859]
        automated match to d2pw0a2
        complexed with mli
      2. 2508369Domain d5k87b1: 5k87 B:5-185 [334915]
        automated match to d2pw0b1
        complexed with mli
      3. 2508370Domain d5k87b2: 5k87 B:186-397 [334916]
        automated match to d2pw0a2
        complexed with mli
  14. 2508379Trypanosoma cruzi [TaxId:5693] [267764] (2 PDB entries)
    1. Domains for 1w61:
      1. 2508380Domain d1w61a_: 1w61 A: [264191]
        Other proteins in same PDB: d1w61b2
        automated match to d4q2ha_
        complexed with pyc
      2. 2508381Domain d1w61b1: 1w61 B:42-396 [264192]
        Other proteins in same PDB: d1w61b2
        automated match to d4q2ha_
        complexed with pyc
    2. Domains for 1w62:
      1. 2508382Domain d1w62a_: 1w62 A: [264193]
        automated match to d4q2ha_
        complexed with pyc
      2. 2508383Domain d1w62b_: 1w62 B: [264194]
        automated match to d4q2ha_
        complexed with pyc
  15. 2508384Xanthomonas campestris [TaxId:190485] [226641] (1 PDB entry)

More info for Protein automated matches from d.21.1.0: automated matches

Timeline for Protein automated matches from d.21.1.0: automated matches: