Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1396887Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1428979Fold d.117: Thymidylate synthase/dCMP hydroxymethylase [55830] (1 superfamily)
    contains large mixed beta-sheet
  4. 1428980Superfamily d.117.1: Thymidylate synthase/dCMP hydroxymethylase [55831] (2 families) (S)
    automatically mapped to Pfam PF00303
  5. 1428981Family d.117.1.1: Thymidylate synthase/dCMP hydroxymethylase [55832] (4 proteins)
  6. 1429236Protein automated matches [190469] (12 species)
    not a true protein

Species:

  1. 1429237Corynebacterium glutamicum [TaxId:196627] [227854] (2 PDB entries)
    1. Domains for 4h0r:
      1. 1429238Domain d4h0ra_: 4h0r A: [227855]
        automated match to d4knza_
      2. 1429239Domain d4h0rb_: 4h0r B: [234588]
        automated match to d4h0ra_
    2. Domains for 4h0u:
      1. 1429240Domain d4h0ua_: 4h0u A: [234590]
        automated match to d4h0ra_
        complexed with ump
      2. 1429241Domain d4h0ub_: 4h0u B: [234589]
        automated match to d4h0ra_
        complexed with ump
      3. 1429242Domain d4h0uc_: 4h0u C: [234599]
        automated match to d4h0ra_
        complexed with ump
      4. 1429243Domain d4h0ud_: 4h0u D: [227856]
        automated match to d4knza_
        complexed with ump
  2. 1429244Cryptosporidium hominis [TaxId:237895] [232024] (2 PDB entries)
    1. Domains for 3dl5:
      1. 1429245Domain d3dl5b2: 3dl5 B:181-521 [232027]
        Other proteins in same PDB: d3dl5a1, d3dl5b1, d3dl5c1, d3dl5d1, d3dl5e1
        automated match to d1qzfa2
        complexed with cb3, dhf, ndp, ump; mutant
      2. 1429246Domain d3dl5c2: 3dl5 C:181-521 [232031]
        Other proteins in same PDB: d3dl5a1, d3dl5b1, d3dl5c1, d3dl5d1, d3dl5e1
        automated match to d1qzfa2
        complexed with cb3, dhf, ndp, ump; mutant
      3. 1429247Domain d3dl5d2: 3dl5 D:193-521 [232026]
        Other proteins in same PDB: d3dl5a1, d3dl5b1, d3dl5c1, d3dl5d1, d3dl5e1
        automated match to d1qzfa2
        complexed with cb3, dhf, ndp, ump; mutant
    2. Domains for 3hj3:
      1. 1429248Domain d3hj3a2: 3hj3 A:192-521 [232479]
        Other proteins in same PDB: d3hj3a1
        automated match to d1qzfa2
        complexed with cb3, mtx, ndp, ump; mutant
      2. 1429249Domain d3hj3b2: 3hj3 B:192-521 [236020]
        Other proteins in same PDB: d3hj3b1, d3hj3d1
        automated match to d3hj3a2
        complexed with cb3, mtx, ndp, ump; mutant
      3. 1429250Domain d3hj3c2: 3hj3 C:192-521 [236019]
        Other proteins in same PDB: d3hj3c1
        automated match to d3hj3a2
      4. 1429251Domain d3hj3d2: 3hj3 D:193-521 [236023]
        Other proteins in same PDB: d3hj3b1, d3hj3d1
        automated match to d3hj3a2
        complexed with cb3, mtx, ndp, ump; mutant
  3. 1429252Encephalitozoon cuniculi [TaxId:284813] [189107] (1 PDB entry)
  4. 1429254Enterococcus faecalis [TaxId:1351] [194752] (1 PDB entry)
  5. 1429259Fungus (Filobasidiella neoformans) [TaxId:5207] [187389] (1 PDB entry)
  6. 1429276Human (Homo sapiens) [TaxId:9606] [189245] (13 PDB entries)
    1. Domain for 3ed7:
    2. Domain for 3egy:
    3. Domain for 3ehi:
    4. Domains for 3gg5:
      1. 1429301Domain d3gg5a_: 3gg5 A: [210523]
        automated match to d2aaza_
        complexed with po4, so4
      2. 1429302Domain d3gg5b_: 3gg5 B: [210524]
        automated match to d2aaza_
        complexed with po4, so4
      3. 1429303Domain d3gg5c_: 3gg5 C: [210525]
        automated match to d2aaza_
        complexed with po4, so4
      4. 1429304Domain d3gg5d_: 3gg5 D: [210526]
        automated match to d2aaza_
        complexed with po4, so4
    5. Domain for 3gh0:
    6. Domain for 3gh2:
    7. Domains for 3h9k:
      1. 1429286Domain d3h9ka_: 3h9k A: [210912]
        automated match to d2aaza_
        complexed with edo, po4, ufp
      2. 1429287Domain d3h9kb_: 3h9k B: [210913]
        automated match to d2aaza_
        complexed with edo, po4, ufp
      3. 1429288Domain d3h9kc_: 3h9k C: [210914]
        automated match to d2aaza_
        complexed with edo, po4, ufp
      4. 1429289Domain d3h9kd_: 3h9k D: [210915]
        automated match to d2aaza_
        complexed with edo, po4, ufp
      5. 1429290Domain d3h9ke_: 3h9k E: [210916]
        automated match to d2aaza_
        complexed with edo, po4, ufp
    8. Domains for 3hb8:
      1. 1429291Domain d3hb8a_: 3hb8 A: [210970]
        automated match to d2aaza_
        complexed with edo, po4, ump
      2. 1429292Domain d3hb8b_: 3hb8 B: [210971]
        automated match to d2aaza_
        complexed with edo, po4, ump
      3. 1429293Domain d3hb8c_: 3hb8 C: [210972]
        automated match to d2aaza_
        complexed with edo, po4, ump
      4. 1429294Domain d3hb8d_: 3hb8 D: [210973]
        automated match to d2aaza_
        complexed with edo, po4, ump
      5. 1429295Domain d3hb8e_: 3hb8 E: [210974]
        automated match to d2aaza_
        complexed with edo, po4, ump
    9. Domain for 3n5g:
    10. Domains for 3ob7:
      1. 1429296Domain d3ob7a_: 3ob7 A: [214286]
        automated match to d2aaza_
        complexed with gsh, po4
      2. 1429297Domain d3ob7b_: 3ob7 B: [214287]
        automated match to d2aaza_
        complexed with gsh, po4
      3. 1429298Domain d3ob7c_: 3ob7 C: [214288]
        automated match to d2aaza_
        complexed with gsh, po4
      4. 1429299Domain d3ob7d_: 3ob7 D: [214289]
        automated match to d2aaza_
        complexed with gsh, po4
      5. 1429300Domain d3ob7e_: 3ob7 E: [214290]
        automated match to d2aaza_
        complexed with gsh, po4
    11. Domain for 4e28:
    12. Domain for 4g2o:
    13. Domain for 4g6w:
  7. 1429305Malaria parasite (Plasmodium falciparum) [TaxId:5833] [188759] (2 PDB entries)
    1. Domains for 3dg8:
      1. 1429306Domain d3dg8c_: 3dg8 C: [173918]
        Other proteins in same PDB: d3dg8a_, d3dg8b_
        automated match to d1j3ic_
        complexed with ndp, rj6, ump; mutant
      2. 1429307Domain d3dg8d_: 3dg8 D: [173919]
        Other proteins in same PDB: d3dg8a_, d3dg8b_
        automated match to d1j3ic_
        complexed with ndp, rj6, ump; mutant
    2. Domains for 3dga:
      1. 1429308Domain d3dgac_: 3dga C: [173920]
        Other proteins in same PDB: d3dgaa_, d3dgab_
        automated match to d1j3ic_
        complexed with ndp, rj1, ump
      2. 1429309Domain d3dgad_: 3dga D: [173921]
        Other proteins in same PDB: d3dgaa_, d3dgab_
        automated match to d1j3ic_
        complexed with ndp, rj1, ump
  8. 1429310Mouse (Mus musculus) [TaxId:10090] [225826] (5 PDB entries)
    1. Domains for 3ihi:
      1. 1429324Domain d3ihia_: 3ihi A: [211690]
        automated match to d3ed7a_
        complexed with so4
      2. 1429325Domain d3ihib_: 3ihi B: [211691]
        automated match to d3ed7a_
        complexed with so4
    2. Domains for 4e5o:
      1. 1429318Domain d4e5oa_: 4e5o A: [220314]
        automated match to d3ed7a_
        complexed with bu1, ump
      2. 1429319Domain d4e5ob_: 4e5o B: [220315]
        automated match to d3ed7a_
        complexed with bu1, ump
      3. 1429320Domain d4e5oc_: 4e5o C: [220316]
        automated match to d3ed7a_
        complexed with bu1, ump
      4. 1429321Domain d4e5od_: 4e5o D: [220317]
        automated match to d3ed7a_
        complexed with bu1, ump
      5. 1429322Domain d4e5oe_: 4e5o E: [220318]
        automated match to d3ed7a_
        complexed with bu1, ump
      6. 1429323Domain d4e5of_: 4e5o F: [220319]
        automated match to d3ed7a_
        complexed with bu1, ump
    3. Domains for 4eb4:
      1. 1429312Domain d4eb4a_: 4eb4 A: [220395]
        automated match to d3ed7a_
        complexed with d16, dtt, gol, mes, so4, ump
      2. 1429313Domain d4eb4b_: 4eb4 B: [220396]
        automated match to d3ed7a_
        complexed with d16, dtt, gol, mes, so4, ump
      3. 1429314Domain d4eb4c_: 4eb4 C: [220397]
        automated match to d3ed7a_
        complexed with d16, dtt, gol, mes, so4, ump
      4. 1429315Domain d4eb4d_: 4eb4 D: [220398]
        automated match to d3ed7a_
        complexed with d16, dtt, gol, mes, so4, ump
    4. Domains for 4ein:
      1. 1429316Domain d4eina_: 4ein A: [220562]
        automated match to d3ed7a_
        complexed with gol, noh
      2. 1429317Domain d4einb_: 4ein B: [220563]
        automated match to d3ed7a_
        complexed with gol, noh
    5. Domain for 4ez8:
  9. 1429326Mycobacterium tuberculosis [TaxId:1773] [189990] (2 PDB entries)
    1. Domains for 3qj7:
      1. 1429331Domain d3qj7a_: 3qj7 A: [184413]
        automated match to d1aiqa_
        complexed with spm, ump
      2. 1429332Domain d3qj7b_: 3qj7 B: [184414]
        automated match to d1aiqa_
        complexed with spm, ump
      3. 1429333Domain d3qj7c_: 3qj7 C: [184415]
        automated match to d1aiqa_
        complexed with spm, ump
      4. 1429334Domain d3qj7d_: 3qj7 D: [184416]
        automated match to d1aiqa_
        complexed with spm, ump
    2. Domains for 4foa:
      1. 1429327Domain d4foaa_: 4foa A: [221388]
        automated match to d3qj7d_
        complexed with ufp
      2. 1429328Domain d4foab_: 4foa B: [221389]
        automated match to d3qj7c_
        complexed with ufp
      3. 1429329Domain d4foac_: 4foa C: [221390]
        automated match to d3qj7a_
        complexed with ufp
      4. 1429330Domain d4foad_: 4foa D: [221391]
        automated match to d3qj7c_
        complexed with ufp
  10. 1429335Mycobacterium tuberculosis [TaxId:83332] [224938] (3 PDB entries)
    1. Domains for 4fog:
      1. 1429346Domain d4foga_: 4fog A: [221401]
        automated match to d1jg0a_
        complexed with c2f, ufp
      2. 1429347Domain d4fogb_: 4fog B: [221402]
        automated match to d1jg0a_
        complexed with c2f, ufp
      3. 1429348Domain d4fogc_: 4fog C: [221403]
        automated match to d1jg0a_
        complexed with c2f, ufp
      4. 1429349Domain d4fogd_: 4fog D: [221404]
        automated match to d1jg0a_
        complexed with c2f, ufp
    2. Domains for 4fox:
      1. 1429338Domain d4foxa_: 4fox A: [221413]
        automated match to d1jg0a_
        complexed with d16, ump
      2. 1429339Domain d4foxb_: 4fox B: [221414]
        automated match to d1jg0a_
        complexed with d16, ump
      3. 1429340Domain d4foxc_: 4fox C: [221415]
        automated match to d1jg0a_
        complexed with d16, ump
      4. 1429341Domain d4foxd_: 4fox D: [221416]
        automated match to d1jg0a_
        complexed with d16, ump
      5. 1429342Domain d4foxe_: 4fox E: [221417]
        automated match to d1jg0a_
        complexed with d16, ump
      6. 1429343Domain d4foxf_: 4fox F: [221418]
        automated match to d1jg0a_
        complexed with d16, ump
      7. 1429344Domain d4foxg_: 4fox G: [221419]
        automated match to d1jg0a_
        complexed with d16, ump
      8. 1429345Domain d4foxh_: 4fox H: [221420]
        automated match to d1jg0a_
        complexed with d16, ump
    3. Domains for 4fqs:
      1. 1429336Domain d4fqsa_: 4fqs A: [221464]
        automated match to d1jg0a_
        complexed with lya, ump
      2. 1429337Domain d4fqsb_: 4fqs B: [221465]
        automated match to d1jg0a_
        complexed with lya, ump
  11. 1429350Staphylococcus aureus [TaxId:158878] [195805] (1 PDB entry)
  12. 1429353Trichinella spiralis [TaxId:6334] [226731] (1 PDB entry)

More info for Protein automated matches from d.117.1.1: Thymidylate synthase/dCMP hydroxymethylase

Timeline for Protein automated matches from d.117.1.1: Thymidylate synthase/dCMP hydroxymethylase: