Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2971307Fold d.113: Nudix [55810] (1 superfamily)
    beta(2)-alpha-beta(3)-alpha; 3 layers: alpha/beta/alpha; mixed sheet
    contains beta-grasp motif
  4. 2971308Superfamily d.113.1: Nudix [55811] (8 families) (S)
  5. 2971309Family d.113.1.1: MutT-like [55812] (17 proteins)
  6. 2971606Protein automated matches [190465] (6 species)
    not a true protein

Species:

  1. 2971607African clawed frog (Xenopus laevis) [TaxId:8355] [187382] (6 PDB entries)
    1. Domain for 1u20:
    2. Domains for 2a8p:
      1. 2971609Domain d2a8pa_: 2a8p A: [126410]
        automated match to d1u20a1
        protein/RNA complex; complexed with mn
      2. 2971610Domain d2a8pb_: 2a8p B: [126411]
        automated match to d1u20a1
        protein/RNA complex; complexed with mn
    3. Domains for 2a8q:
      1. 2971617Domain d2a8qa_: 2a8q A: [126412]
        automated match to d1u20a1
        protein/RNA complex; complexed with mn, pop
      2. 2971618Domain d2a8qb_: 2a8q B: [126413]
        automated match to d1u20a1
        protein/RNA complex; complexed with mn, pop
    4. Domains for 2a8r:
      1. 2971615Domain d2a8ra_: 2a8r A: [126414]
        automated match to d1u20a1
        protein/RNA complex; complexed with mn, pop
      2. 2971616Domain d2a8rb_: 2a8r B: [126415]
        automated match to d1u20a1
        protein/RNA complex; complexed with mn, pop
    5. Domains for 2a8s:
      1. 2971613Domain d2a8sa_: 2a8s A: [126416]
        automated match to d1u20a1
        protein/RNA complex; complexed with gtp, mn
      2. 2971614Domain d2a8sb_: 2a8s B: [126417]
        automated match to d1u20a1
        protein/RNA complex; complexed with gtp, mn
    6. Domains for 2a8t:
      1. 2971611Domain d2a8ta_: 2a8t A: [126418]
        automated match to d1u20a1
        protein/RNA complex; complexed with adn, mgt, mn
      2. 2971612Domain d2a8tb_: 2a8t B: [126419]
        automated match to d1u20a1
        protein/RNA complex; complexed with adn, mgt, mn
  2. 2971619Canis lupus [TaxId:9615] [347014] (1 PDB entry)
  3. 2971623Human (Homo sapiens) [TaxId:9606] [189707] (13 PDB entries)
    1. Domains for 3mcf:
      1. 2971631Domain d3mcfa1: 3mcf A:17-144 [199827]
        Other proteins in same PDB: d3mcfa2, d3mcfa3, d3mcfb2
        automated match to d3mcfb_
        complexed with flc, gol
      2. 2971632Domain d3mcfb1: 3mcf B:17-144 [196459]
        Other proteins in same PDB: d3mcfa2, d3mcfa3, d3mcfb2
        automated match to d2duka_
        complexed with flc, gol
    2. Domains for 3q93:
      1. 2971627Domain d3q93a_: 3q93 A: [215131]
        automated match to d3zr0b_
        complexed with gol, imd, so4
      2. 2971628Domain d3q93b_: 3q93 B: [215132]
        automated match to d3zr0b_
        complexed with gol, imd, so4
    3. Domains for 3u53:
      1. 2971645Domain d3u53a_: 3u53 A: [200932]
        automated match to d3u53c_
        complexed with gol, so4
      2. 2971646Domain d3u53b_: 3u53 B: [200933]
        automated match to d3u53c_
        complexed with gol, so4
      3. 2971647Domain d3u53c_: 3u53 C: [193745]
        automated match to d1xsba_
        complexed with gol, so4
      4. 2971648Domain d3u53d_: 3u53 D: [200934]
        automated match to d3u53c_
        complexed with gol, so4
    4. Domains for 3zr0:
      1. 2971625Domain d3zr0a_: 3zr0 A: [186523]
        automated match to d1irya_
        protein/DNA complex; complexed with 8og, so4
      2. 2971626Domain d3zr0b_: 3zr0 B: [186524]
        automated match to d1irya_
        protein/DNA complex; complexed with 8og, so4
    5. Domains for 3zr1:
      1. 2971629Domain d3zr1a_: 3zr1 A: [186525]
        automated match to d1irya_
        complexed with act, so4
      2. 2971630Domain d3zr1b_: 3zr1 B: [186526]
        automated match to d1irya_
        complexed with act, so4
    6. Domain for 4c9w:
    7. Domain for 4c9x:
    8. Domains for 4ick:
      1. 2971641Domain d4icka1: 4ick A:4-147 [229603]
        Other proteins in same PDB: d4icka2, d4ickb2
        automated match to d4ijxa_
        complexed with gol, mg, po4; mutant
      2. 2971642Domain d4ickb1: 4ick B:3-147 [229602]
        Other proteins in same PDB: d4icka2, d4ickb2
        automated match to d4ijxb_
        complexed with gol, mg, po4; mutant
    9. Domains for 4ijx:
      1. 2971636Domain d4ijxa1: 4ijx A:4-147 [196683]
        Other proteins in same PDB: d4ijxa2, d4ijxb2
        automated match to d1xsba_
        complexed with dpo, gol, mg, po4; mutant
      2. 2971637Domain d4ijxb1: 4ijx B:3-147 [196682]
        Other proteins in same PDB: d4ijxa2, d4ijxb2
        automated match to d1xsba_
        complexed with dpo, gol, mg, po4; mutant
    10. Domain for 5ans:
    11. Domains for 5ant:
      1. 2971638Domain d5anta_: 5ant A: [312938]
        automated match to d1irya_
        complexed with rje
      2. 2971639Domain d5antb_: 5ant B: [312549]
        automated match to d1irya_
        complexed with rje
      3. 2971640Domain d5antc_: 5ant C: [312555]
        automated match to d1irya_
        complexed with rje
    12. Domain for 5fsk:
    13. Domains for 5ltu:
      1. 2971643Domain d5ltua_: 5ltu A: [339118]
        automated match to d2duka_
        complexed with edo
      2. 2971644Domain d5ltub_: 5ltu B: [339117]
        automated match to d2duka_
        complexed with edo
  4. 2971649Mouse (Mus musculus) [TaxId:10090] [187640] (1 PDB entry)
  5. 2971652Mycobacterium tuberculosis [TaxId:1773] [323913] (1 PDB entry)
  6. 2971660Zebrafish (Danio rerio) [TaxId:7955] [315259] (2 PDB entries)
    1. Domains for 5hzx:
      1. 2971662Domain d5hzxa_: 5hzx A: [315322]
        automated match to d1irya_
        complexed with 2ge, act, gol, peg, so4
      2. 2971663Domain d5hzxb_: 5hzx B: [315260]
        automated match to d1irya_
        complexed with 2ge, act, gol, peg, so4
    2. Domain for 5otn:

More info for Protein automated matches from d.113.1.1: MutT-like

Timeline for Protein automated matches from d.113.1.1: MutT-like: