SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class g: Small proteins [56992] (100 folds)
Fold g.39: Glucocorticoid receptor-like (DNA-binding domain) [57715] (1 superfamily)
alpha+beta metal(zinc)-bound fold
Superfamily g.39.1: Glucocorticoid receptor-like (DNA-binding domain) [57716] (19 families)
Family g.39.1.0: automated matches [191378] (1 protein)
not a true family
Protein automated matches [190463] (9 species)
not a true protein

Species:

Bacillus anthracis [TaxId:260799] [225213] (1 PDB entry)
- Domain for 2j9r:
  - Domain d2j9ra2: 2j9r A:143-193 [205006]
    Other proteins in same PDB: d2j9ra1, d2j9ra3
    automated match to d1xx6a2
    protein/DNA complex; complexed with po4, thm, zn
Bacillus cereus [TaxId:1396] [225215] (1 PDB entry)
- Domain for 2ja1:
  - Domain d2ja1a2: 2ja1 A:143-191 [205008]
    Other proteins in same PDB: d2ja1a1
    automated match to d1xx6a2
    complexed with mpd, ttp, zn

Emericella nidulans [TaxId:162425] [225494] (3 PDB entries)

Domains for 2vus:

Domain d2vusi_: 2vus I: [153565]
Other proteins in same PDB: d2vusa_, d2vusb_, d2vusc_, d2vusd_, d2vuse_, d2vusf_, d2vusg_, d2vush_
automated match to d1gnfa_
protein/DNA complex; complexed with cl, so4, zn

Domain d2vusj_: 2vus J: [153566]
Other proteins in same PDB: d2vusa_, d2vusb_, d2vusc_, d2vusd_, d2vuse_, d2vusf_, d2vusg_, d2vush_
automated match to d1gnfa_
protein/DNA complex; complexed with cl, so4, zn

Domain d2vusk_: 2vus K: [153567]
Other proteins in same PDB: d2vusa_, d2vusb_, d2vusc_, d2vusd_, d2vuse_, d2vusf_, d2vusg_, d2vush_
automated match to d1gnfa_
protein/DNA complex; complexed with cl, so4, zn

Domain d2vusl_: 2vus L: [153568]
Other proteins in same PDB: d2vusa_, d2vusb_, d2vusc_, d2vusd_, d2vuse_, d2vusf_, d2vusg_, d2vush_
automated match to d1gnfa_
protein/DNA complex; complexed with cl, so4, zn

Domain d2vusm_: 2vus M: [153569]
Other proteins in same PDB: d2vusa_, d2vusb_, d2vusc_, d2vusd_, d2vuse_, d2vusf_, d2vusg_, d2vush_
automated match to d1gnfa_
protein/DNA complex; complexed with cl, so4, zn

Domain d2vusn_: 2vus N: [153570]
Other proteins in same PDB: d2vusa_, d2vusb_, d2vusc_, d2vusd_, d2vuse_, d2vusf_, d2vusg_, d2vush_
automated match to d1gnfa_
protein/DNA complex; complexed with cl, so4, zn

Domain d2vuso_: 2vus O: [153571]
Other proteins in same PDB: d2vusa_, d2vusb_, d2vusc_, d2vusd_, d2vuse_, d2vusf_, d2vusg_, d2vush_
automated match to d1gnfa_
protein/DNA complex; complexed with cl, so4, zn

Domain d2vusp_: 2vus P: [153572]
Other proteins in same PDB: d2vusa_, d2vusb_, d2vusc_, d2vusd_, d2vuse_, d2vusf_, d2vusg_, d2vush_
automated match to d1gnfa_
protein/DNA complex; complexed with cl, so4, zn

Domains for 2vut:

Domain d2vuti_: 2vut I: [153581]
Other proteins in same PDB: d2vuta_, d2vutb_, d2vutc_, d2vutd_, d2vute_, d2vutf_, d2vutg_, d2vuth_
automated match to d1gnfa_
protein/DNA complex; complexed with cl, gol, nad, zn

Domain d2vutj_: 2vut J: [153582]
Other proteins in same PDB: d2vuta_, d2vutb_, d2vutc_, d2vutd_, d2vute_, d2vutf_, d2vutg_, d2vuth_
automated match to d1gnfa_
protein/DNA complex; complexed with cl, gol, nad, zn

Domain d2vutk_: 2vut K: [153583]
Other proteins in same PDB: d2vuta_, d2vutb_, d2vutc_, d2vutd_, d2vute_, d2vutf_, d2vutg_, d2vuth_
automated match to d1gnfa_
protein/DNA complex; complexed with cl, gol, nad, zn

Domain d2vutl_: 2vut L: [153584]
Other proteins in same PDB: d2vuta_, d2vutb_, d2vutc_, d2vutd_, d2vute_, d2vutf_, d2vutg_, d2vuth_
automated match to d1gnfa_
protein/DNA complex; complexed with cl, gol, nad, zn

Domain d2vutm_: 2vut M: [153585]
Other proteins in same PDB: d2vuta_, d2vutb_, d2vutc_, d2vutd_, d2vute_, d2vutf_, d2vutg_, d2vuth_
automated match to d1gnfa_
protein/DNA complex; complexed with cl, gol, nad, zn

Domain d2vutn_: 2vut N: [153586]
Other proteins in same PDB: d2vuta_, d2vutb_, d2vutc_, d2vutd_, d2vute_, d2vutf_, d2vutg_, d2vuth_
automated match to d1gnfa_
protein/DNA complex; complexed with cl, gol, nad, zn

Domain d2vuto_: 2vut O: [153587]
Other proteins in same PDB: d2vuta_, d2vutb_, d2vutc_, d2vutd_, d2vute_, d2vutf_, d2vutg_, d2vuth_
automated match to d1gnfa_
protein/DNA complex; complexed with cl, gol, nad, zn

Domain d2vutp_: 2vut P: [153588]
Other proteins in same PDB: d2vuta_, d2vutb_, d2vutc_, d2vutd_, d2vute_, d2vutf_, d2vutg_, d2vuth_
automated match to d1gnfa_
protein/DNA complex; complexed with cl, gol, nad, zn

Domains for 2vuu:

Domain d2vuui_: 2vuu I: [153597]
Other proteins in same PDB: d2vuua_, d2vuub_, d2vuuc_, d2vuud_, d2vuue_, d2vuuf_, d2vuug_, d2vuuh_
automated match to d1gnfa_
protein/DNA complex; complexed with nap, zn

Domain d2vuuj_: 2vuu J: [153598]
Other proteins in same PDB: d2vuua_, d2vuub_, d2vuuc_, d2vuud_, d2vuue_, d2vuuf_, d2vuug_, d2vuuh_
automated match to d1gnfa_
protein/DNA complex; complexed with nap, zn

Domain d2vuuk_: 2vuu K: [153599]
Other proteins in same PDB: d2vuua_, d2vuub_, d2vuuc_, d2vuud_, d2vuue_, d2vuuf_, d2vuug_, d2vuuh_
automated match to d1gnfa_
protein/DNA complex; complexed with nap, zn

Domain d2vuul_: 2vuu L: [153600]
Other proteins in same PDB: d2vuua_, d2vuub_, d2vuuc_, d2vuud_, d2vuue_, d2vuuf_, d2vuug_, d2vuuh_
automated match to d1gnfa_
protein/DNA complex; complexed with nap, zn

Domain d2vuum_: 2vuu M: [153601]
Other proteins in same PDB: d2vuua_, d2vuub_, d2vuuc_, d2vuud_, d2vuue_, d2vuuf_, d2vuug_, d2vuuh_
automated match to d1gnfa_
protein/DNA complex; complexed with nap, zn

Domain d2vuun_: 2vuu N: [153602]
Other proteins in same PDB: d2vuua_, d2vuub_, d2vuuc_, d2vuud_, d2vuue_, d2vuuf_, d2vuug_, d2vuuh_
automated match to d1gnfa_
protein/DNA complex; complexed with nap, zn

Domain d2vuuo_: 2vuu O: [153603]
Other proteins in same PDB: d2vuua_, d2vuub_, d2vuuc_, d2vuud_, d2vuue_, d2vuuf_, d2vuug_, d2vuuh_
automated match to d1gnfa_
protein/DNA complex; complexed with nap, zn

Domain d2vuup_: 2vuu P: [153604]
Other proteins in same PDB: d2vuua_, d2vuub_, d2vuuc_, d2vuud_, d2vuue_, d2vuuf_, d2vuug_, d2vuuh_
automated match to d1gnfa_
protein/DNA complex; complexed with nap, zn

Geobacillus stearothermophilus [TaxId:1422] [255900] (1 PDB entry)
- Domain for 3jr5:
  - Domain d3jr5a3: 3jr5 A:229-274 [247025]
    Other proteins in same PDB: d3jr5a1, d3jr5a2
    automated match to d1r2za3
    protein/DNA complex; complexed with gol, zn
Human (Homo sapiens) [TaxId:9606] [187379] (11 PDB entries)
1. Domains for 1w4r:
  1. Domain d1w4ra2: 1w4r A:151-191 [230357]
    Other proteins in same PDB: d1w4ra1, d1w4rb1, d1w4rc1, d1w4rd1, d1w4re1, d1w4rf1, d1w4rg1, d1w4rh1
    automated match to d1xbta2
    complexed with dtu, ttp, zn
  2. Domain d1w4rb2: 1w4r B:151-191 [230355]
    Other proteins in same PDB: d1w4ra1, d1w4rb1, d1w4rc1, d1w4rd1, d1w4re1, d1w4rf1, d1w4rg1, d1w4rh1
    automated match to d1xbta2
    complexed with dtu, ttp, zn
  3. Domain d1w4rc2: 1w4r C:151-191 [230359]
    Other proteins in same PDB: d1w4ra1, d1w4rb1, d1w4rc1, d1w4rd1, d1w4re1, d1w4rf1, d1w4rg1, d1w4rh1
    automated match to d1xbta2
    complexed with dtu, ttp, zn
  4. Domain d1w4rd2: 1w4r D:151-191 [230361]
    Other proteins in same PDB: d1w4ra1, d1w4rb1, d1w4rc1, d1w4rd1, d1w4re1, d1w4rf1, d1w4rg1, d1w4rh1
    automated match to d1xbta2
    complexed with dtu, ttp, zn
  5. Domain d1w4re2: 1w4r E:151-191 [230363]
    Other proteins in same PDB: d1w4ra1, d1w4rb1, d1w4rc1, d1w4rd1, d1w4re1, d1w4rf1, d1w4rg1, d1w4rh1
    automated match to d1xbta2
    complexed with dtu, ttp, zn
  6. Domain d1w4rf2: 1w4r F:151-191 [230365]
    Other proteins in same PDB: d1w4ra1, d1w4rb1, d1w4rc1, d1w4rd1, d1w4re1, d1w4rf1, d1w4rg1, d1w4rh1
    automated match to d1xbta2
    complexed with dtu, ttp, zn
  7. Domain d1w4rg2: 1w4r G:151-191 [230367]
    Other proteins in same PDB: d1w4ra1, d1w4rb1, d1w4rc1, d1w4rd1, d1w4re1, d1w4rf1, d1w4rg1, d1w4rh1
    automated match to d1xbta2
    complexed with dtu, ttp, zn
  8. Domain d1w4rh2: 1w4r H:151-191 [230369]
    Other proteins in same PDB: d1w4ra1, d1w4rb1, d1w4rc1, d1w4rd1, d1w4re1, d1w4rf1, d1w4rg1, d1w4rh1
    automated match to d1xbta2
    complexed with dtu, ttp, zn
2. Domain for 2a66:
  - Domain d2a66a_: 2a66 A: [162699]
    automated match to d1lo1a_
    protein/DNA complex; complexed with act, zn
3. Domain for 2ebl:
  - Domain d2ebla1: 2ebl A:8-83 [241713]
    Other proteins in same PDB: d2ebla2, d2ebla3
    automated match to d1a6yb_
    complexed with zn
4. Domain for 2jtg:
  - Domain d2jtga1: 2jtg A:1-81 [242286]
    Other proteins in same PDB: d2jtga2
    automated match to d2d8ra1
    complexed with zn
5. Domain for 2l1g:
  - Domain d2l1ga1: 2l1g A:1-82 [242734]
    Other proteins in same PDB: d2l1ga2
    automated match to d2d8ra1
    protein/DNA complex; complexed with zn
6. Domains for 2lzu:
  1. Domain d2lzua1: 2lzu A:36-68 [256405]
    automated match to d2d8ya1
    complexed with zn
  2. Domain d2lzua2: 2lzu A:69-107 [256406]
    automated match to d2d8ya2
    complexed with zn
7. Domains for 2o10:
  1. Domain d2o10a1: 2o10 A:7-35 [243261]
    automated match to d1a7ia1
    complexed with zn
  2. Domain d2o10a2: 2o10 A:36-66 [243262]
    automated match to d1a7ia2
    complexed with zn
8. Domains for 2o13:
  1. Domain d2o13a1: 2o13 A:119-144 [243263]
    automated match to d1cxxa1
    complexed with zn
  2. Domain d2o13a2: 2o13 A:145-176 [243264]
    automated match to d1ibia2
    complexed with zn
9. Domains for 2wvj:
  1. Domain d2wvja2: 2wvj A:151-191 [231526]
    Other proteins in same PDB: d2wvja1, d2wvjb1, d2wvjc1, d2wvjd1, d2wvje1, d2wvjf1, d2wvjg1, d2wvjh1
    automated match to d1xbta2
    complexed with mg, ttp, zn; mutant
  2. Domain d2wvjb2: 2wvj B:151-192 [231520]
    Other proteins in same PDB: d2wvja1, d2wvjb1, d2wvjc1, d2wvjd1, d2wvje1, d2wvjf1, d2wvjg1, d2wvjh1
    automated match to d1xbta2
    complexed with mg, ttp, zn; mutant
  3. Domain d2wvjc2: 2wvj C:151-191 [231522]
    Other proteins in same PDB: d2wvja1, d2wvjb1, d2wvjc1, d2wvjd1, d2wvje1, d2wvjf1, d2wvjg1, d2wvjh1
    automated match to d1xbta2
    complexed with mg, ttp, zn; mutant
  4. Domain d2wvjd2: 2wvj D:151-191 [231528]
    Other proteins in same PDB: d2wvja1, d2wvjb1, d2wvjc1, d2wvjd1, d2wvje1, d2wvjf1, d2wvjg1, d2wvjh1
    automated match to d1xbta2
    complexed with mg, ttp, zn; mutant
  5. Domain d2wvje2: 2wvj E:151-191 [231527]
    Other proteins in same PDB: d2wvja1, d2wvjb1, d2wvjc1, d2wvjd1, d2wvje1, d2wvjf1, d2wvjg1, d2wvjh1
    automated match to d1xbta2
    complexed with mg, ttp, zn; mutant
  6. Domain d2wvjf2: 2wvj F:151-191 [238984]
    Other proteins in same PDB: d2wvja1, d2wvjb1, d2wvjc1, d2wvjd1, d2wvje1, d2wvjf1, d2wvjg1, d2wvjh1
    automated match to d2wvjb2
    complexed with mg, ttp, zn; mutant
  7. Domain d2wvjg2: 2wvj G:151-191 [238986]
    Other proteins in same PDB: d2wvja1, d2wvjb1, d2wvjc1, d2wvjd1, d2wvje1, d2wvjf1, d2wvjg1, d2wvjh1
    automated match to d2wvjb2
    complexed with mg, ttp, zn; mutant
  8. Domain d2wvjh2: 2wvj H:151-191 [238988]
    Other proteins in same PDB: d2wvja1, d2wvjb1, d2wvjc1, d2wvjd1, d2wvje1, d2wvjf1, d2wvjg1, d2wvjh1
    automated match to d2wvjb2
    complexed with mg, ttp, zn; mutant
10. Domain for 4nrv:
  - Domain d4nrva3: 4nrv A:247-290 [266981]
    Other proteins in same PDB: d4nrva1, d4nrva2
    automated match to d1tdha3
    complexed with trs
11. Domain for 5itq:
  - Domain d5itqa3: 5itq A:247-290 [319379]
    Other proteins in same PDB: d5itqa1, d5itqa2
    automated match to d1tdha3
    protein/DNA complex
Lactococcus lactis [TaxId:1359] [256615] (1 PDB entry)
- Domains for 4cis:
  1. Domain d4cisa3: 4cis A:219-271 [256616]
    Other proteins in same PDB: d4cisa1, d4cisa2, d4cisb1, d4cisb2
    automated match to d1xc8a3
    protein/DNA complex; complexed with bu3, zn
  2. Domain d4cisb3: 4cis B:219-271 [258653]
    Other proteins in same PDB: d4cisa1, d4cisa2, d4cisb1, d4cisb2
    automated match to d1xc8a3
    protein/DNA complex; complexed with bu3, zn
Leishmania major [TaxId:5664] [346432] (3 PDB entries)
1. Domains for 4uxh:
  1. Domain d4uxha2: 4uxh A:138-179 [345456]
    Other proteins in same PDB: d4uxha1, d4uxhb1
    automated match to d5fuwa2
    complexed with t5a, zn
  2. Domain d4uxhb2: 4uxh B:138-181 [345458]
    Other proteins in same PDB: d4uxha1, d4uxhb1
    automated match to d5fuwa2
    complexed with t5a, zn
2. Domains for 4uxi:
  1. Domain d4uxia2: 4uxi A:138-181 [345460]
    Other proteins in same PDB: d4uxia1, d4uxib1
    automated match to d5fuwa2
    complexed with po4, thm, zn
  2. Domain d4uxib2: 4uxi B:138-180 [345462]
    Other proteins in same PDB: d4uxia1, d4uxib1
    automated match to d5fuwa2
    complexed with po4, thm, zn
3. Domains for 4uxj:
  1. Domain d4uxja2: 4uxj A:138-182 [345464]
    Other proteins in same PDB: d4uxja1, d4uxjb1, d4uxjc1, d4uxjd1, d4uxje1, d4uxjf1, d4uxjg1, d4uxjh1
    automated match to d5fuwa2
    complexed with mg, ttp, zn
  2. Domain d4uxjb2: 4uxj B:138-179 [345466]
    Other proteins in same PDB: d4uxja1, d4uxjb1, d4uxjc1, d4uxjd1, d4uxje1, d4uxjf1, d4uxjg1, d4uxjh1
    automated match to d5fuwa2
    complexed with mg, ttp, zn
  3. Domain d4uxjc2: 4uxj C:138-179 [345468]
    Other proteins in same PDB: d4uxja1, d4uxjb1, d4uxjc1, d4uxjd1, d4uxje1, d4uxjf1, d4uxjg1, d4uxjh1
    automated match to d5fuwa2
    complexed with mg, ttp, zn
  4. Domain d4uxjd2: 4uxj D:138-179 [345470]
    Other proteins in same PDB: d4uxja1, d4uxjb1, d4uxjc1, d4uxjd1, d4uxje1, d4uxjf1, d4uxjg1, d4uxjh1
    automated match to d5fuwa2
    complexed with mg, ttp, zn
  5. Domain d4uxje2: 4uxj E:138-179 [345472]
    Other proteins in same PDB: d4uxja1, d4uxjb1, d4uxjc1, d4uxjd1, d4uxje1, d4uxjf1, d4uxjg1, d4uxjh1
    automated match to d5fuwa2
    complexed with mg, ttp, zn
  6. Domain d4uxjf2: 4uxj F:138-181 [345474]
    Other proteins in same PDB: d4uxja1, d4uxjb1, d4uxjc1, d4uxjd1, d4uxje1, d4uxjf1, d4uxjg1, d4uxjh1
    automated match to d5fuwa2
    complexed with mg, ttp, zn
  7. Domain d4uxjg2: 4uxj G:138-179 [345476]
    Other proteins in same PDB: d4uxja1, d4uxjb1, d4uxjc1, d4uxjd1, d4uxje1, d4uxjf1, d4uxjg1, d4uxjh1
    automated match to d5fuwa2
    complexed with mg, ttp, zn
  8. Domain d4uxjh2: 4uxj H:138-177 [345478]
    Other proteins in same PDB: d4uxja1, d4uxjb1, d4uxjc1, d4uxjd1, d4uxje1, d4uxjf1, d4uxjg1, d4uxjh1
    automated match to d5fuwa2
    complexed with mg, ttp, zn
Neisseria meningitidis [TaxId:996307] [391911] (1 PDB entry)
- Domains for 6tc6:
  1. Domain d6tc6a3: 6tc6 A:240-275 [391912]
    Other proteins in same PDB: d6tc6a1, d6tc6a2, d6tc6c1, d6tc6c2
    automated match to d3gq4a3
    complexed with zn
  2. Domain d6tc6c3: 6tc6 C:243-275 [391949]
    Other proteins in same PDB: d6tc6a1, d6tc6a2, d6tc6c1, d6tc6c2
    automated match to d3gq4a3
    complexed with zn
Trypanosome (Trypanosoma brucei) [TaxId:5691] [319948] (4 PDB entries)
1. Domains for 5fuv:
  1. Domain d5fuva2: 5fuv A:339-384 [320002]
    Other proteins in same PDB: d5fuva1, d5fuvb1
    automated match to d1xbta2
    complexed with gol, po4, thm, zn
  2. Domain d5fuvb2: 5fuv B:339-383 [320080]
    Other proteins in same PDB: d5fuva1, d5fuvb1
    automated match to d1xbta2
    complexed with gol, po4, thm, zn
2. Domains for 5fuw:
  1. Domain d5fuwa2: 5fuw A:339-384 [320084]
    Other proteins in same PDB: d5fuwa1, d5fuwb1
    automated match to d1xbta2
    complexed with po4, qbt, thm, zn
  2. Domain d5fuwb2: 5fuw B:339-384 [320007]
    Other proteins in same PDB: d5fuwa1, d5fuwb1
    automated match to d1xbta2
    complexed with po4, qbt, thm, zn
3. Domains for 5fux:
  1. Domain d5fuxa2: 5fux A:339-384 [319957]
    Other proteins in same PDB: d5fuxa1, d5fuxb1
    automated match to d1xbta2
    complexed with mg, po4, qbt, zn
  2. Domain d5fuxb2: 5fux B:339-384 [320198]
    Other proteins in same PDB: d5fuxa1, d5fuxb1
    automated match to d1xbta2
    complexed with mg, po4, qbt, zn
4. Domains for 5fuy:
  1. Domain d5fuya2: 5fuy A:339-384 [320062]
    Other proteins in same PDB: d5fuya1, d5fuyb1, d5fuyc1, d5fuyd1, d5fuye1, d5fuye3, d5fuyf1
    automated match to d1xbta2
    complexed with po4, qbt, zn
  2. Domain d5fuyb2: 5fuy B:339-383 [320178]
    Other proteins in same PDB: d5fuya1, d5fuyb1, d5fuyc1, d5fuyd1, d5fuye1, d5fuye3, d5fuyf1
    automated match to d1xbta2
    complexed with po4, qbt, zn
  3. Domain d5fuyc2: 5fuy C:339-384 [320096]
    Other proteins in same PDB: d5fuya1, d5fuyb1, d5fuyc1, d5fuyd1, d5fuye1, d5fuye3, d5fuyf1
    automated match to d1xbta2
    complexed with po4, qbt, zn
  4. Domain d5fuyd2: 5fuy D:339-382 [319949]
    Other proteins in same PDB: d5fuya1, d5fuyb1, d5fuyc1, d5fuyd1, d5fuye1, d5fuye3, d5fuyf1
    automated match to d1xbta2
    complexed with po4, qbt, zn
  5. Domain d5fuye2: 5fuy E:339-384 [320040]
    Other proteins in same PDB: d5fuya1, d5fuyb1, d5fuyc1, d5fuyd1, d5fuye1, d5fuye3, d5fuyf1
    automated match to d1xbta2
    complexed with po4, qbt, zn
  6. Domain d5fuyf2: 5fuy F:339-384 [320143]
    Other proteins in same PDB: d5fuya1, d5fuyb1, d5fuyc1, d5fuyd1, d5fuye1, d5fuye3, d5fuyf1
    automated match to d1xbta2
    complexed with po4, qbt, zn

More info for Protein automated matches from g.39.1.0: automated matches

Timeline for Protein automated matches from g.39.1.0: automated matches:

Protein automated matches from g.39.1.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from g.39.1.0: automated matches appears in SCOPe 2.07