Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1565955Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1590099Fold c.26: Adenine nucleotide alpha hydrolase-like [52373] (3 superfamilies)
    core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145
  4. 1590100Superfamily c.26.1: Nucleotidylyl transferase [52374] (6 families) (S)
  5. 1590710Family c.26.1.0: automated matches [191377] (1 protein)
    not a true family
  6. 1590711Protein automated matches [190459] (36 species)
    not a true protein

Species:

  1. 1590712Aeropyrum pernix [TaxId:56636] [189259] (2 PDB entries)
    1. Domain for 3a04:
    2. Domain for 3a05:
  2. 1590715Aquifex aeolicus [TaxId:63363] [230619] (2 PDB entries)
    1. Domains for 2csx:
      1. 1590718Domain d2csxa1: 2csx A:1-346 [230621]
        Other proteins in same PDB: d2csxa2, d2csxb2
        automated match to d1a8ha2
        protein/RNA complex
      2. 1590719Domain d2csxb1: 2csx B:1-346 [230622]
        Other proteins in same PDB: d2csxa2, d2csxb2
        automated match to d1a8ha2
        protein/RNA complex
    2. Domains for 2ct8:
      1. 1590716Domain d2ct8a1: 2ct8 A:1-346 [241484]
        Other proteins in same PDB: d2ct8a2, d2ct8b2
        automated match to d2csxa1
        protein/RNA complex; complexed with msp
      2. 1590717Domain d2ct8b1: 2ct8 B:1-346 [241486]
        Other proteins in same PDB: d2ct8a2, d2ct8b2
        automated match to d2csxa1
        protein/RNA complex; complexed with msp
  3. 1590720Bacillus subtilis [TaxId:1423] [256024] (1 PDB entry)
  4. 1590723Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [255117] (2 PDB entries)
    1. Domain for 2dlc:
    2. Domain for 2ip1:
  5. 1590726Borrelia burgdorferi [TaxId:224326] [226461] (1 PDB entry)
  6. 1590729Brucella melitensis [TaxId:29459] [225767] (1 PDB entry)
  7. 1590734Burkholderia pseudomallei [TaxId:320372] [189579] (2 PDB entries)
    1. Domain for 3k9w:
    2. Domain for 3pxu:
  8. 1590737Burkholderia thailandensis [TaxId:271848] [189811] (3 PDB entries)
    1. Domains for 3uk2:
      1. 1590740Domain d3uk2a_: 3uk2 A: [186333]
        automated match to d1ihoa_
        complexed with amp, cl, edo, mlt
      2. 1590741Domain d3uk2b_: 3uk2 B: [186334]
        automated match to d1ihoa_
        complexed with amp, cl, edo, mlt
    2. Domain for 4g6z:
    3. Domain for 4wso:
  9. 1590742Campylobacter jejuni [TaxId:192222] [189366] (4 PDB entries)
    1. Domains for 3m5w:
      1. 1590747Domain d3m5wa_: 3m5w A: [259796]
        automated match to d3sz3a_
        complexed with gol, so4
      2. 1590748Domain d3m5wb_: 3m5w B: [259797]
        automated match to d3sz3a_
        complexed with gol, so4
    2. Domain for 3mxt:
    3. Domains for 3tzl:
      1. 1590745Domain d3tzla_: 3tzl A: [186028]
        automated match to d1i6ka_
        protein/RNA complex; complexed with adp, na, po4, trp
      2. 1590746Domain d3tzlb_: 3tzl B: [186029]
        automated match to d1i6ka_
        protein/RNA complex; complexed with adp, na, po4, trp
    4. Domain for 3uy4:
  10. 1590749Coxiella burnetii [TaxId:227377] [195012] (1 PDB entry)
  11. 1590753Coxiella burnetii [TaxId:777] [226213] (1 PDB entry)
  12. 1590755Cryptosporidium parvum [TaxId:353152] [188948] (1 PDB entry)
  13. 1590758Deinococcus radiodurans [TaxId:1299] [187374] (2 PDB entries)
    1. Domains for 1yid:
      1. 1590762Domain d1yida_: 1yid A: [203195]
        automated match to d2g36a_
        protein/RNA complex; complexed with atp, mg
      2. 1590763Domain d1yidb_: 1yid B: [203196]
        automated match to d2g36a_
        protein/RNA complex; complexed with atp, mg
      3. 1590764Domain d1yidc_: 1yid C: [203197]
        automated match to d2g36a_
        protein/RNA complex; complexed with atp, mg
    2. Domains for 2a4m:
      1. 1590759Domain d2a4ma_: 2a4m A: [162674]
        automated match to d1i6ka_
        complexed with trp
      2. 1590760Domain d2a4mb_: 2a4m B: [162675]
        automated match to d1i6ka_
        complexed with trp
      3. 1590761Domain d2a4mc_: 2a4m C: [162676]
        automated match to d1i6ka_
        complexed with trp
  14. 1590765Deinococcus radiodurans [TaxId:243230] [224963] (1 PDB entry)
  15. 1590769Encephalitozoon cuniculi [TaxId:284813] [226231] (1 PDB entry)
  16. 1590772Entamoeba (Entamoeba histolytica) [TaxId:5759] [255876] (1 PDB entry)
  17. 1590779Enterococcus faecalis [TaxId:1351] [189996] (3 PDB entries)
    1. Domains for 3nd5:
      1. 1590780Domain d3nd5a_: 3nd5 A: [182156]
        automated match to d1gn8a_
      2. 1590781Domain d3nd5b_: 3nd5 B: [182157]
        automated match to d1gn8a_
      3. 1590782Domain d3nd5c_: 3nd5 C: [182158]
        automated match to d1gn8a_
      4. 1590783Domain d3nd5d_: 3nd5 D: [182159]
        automated match to d1gn8a_
      5. 1590784Domain d3nd5e_: 3nd5 E: [182160]
        automated match to d1gn8a_
      6. 1590785Domain d3nd5f_: 3nd5 F: [182161]
        automated match to d1gn8a_
    2. Domains for 3nd6:
      1. 1590786Domain d3nd6a_: 3nd6 A: [182162]
        automated match to d1gn8a_
        complexed with atp
      2. 1590787Domain d3nd6b_: 3nd6 B: [182163]
        automated match to d1gn8a_
        complexed with atp
      3. 1590788Domain d3nd6c_: 3nd6 C: [182164]
        automated match to d1gn8a_
        complexed with atp
      4. 1590789Domain d3nd6d_: 3nd6 D: [182165]
        automated match to d1gn8a_
        complexed with atp
      5. 1590790Domain d3nd6e_: 3nd6 E: [182166]
        automated match to d1gn8a_
        complexed with atp
      6. 1590791Domain d3nd6f_: 3nd6 F: [182167]
        automated match to d1gn8a_
        complexed with atp
    3. Domains for 3nd7:
      1. 1590792Domain d3nd7a_: 3nd7 A: [182168]
        automated match to d1gn8a_
        complexed with pny
      2. 1590793Domain d3nd7b_: 3nd7 B: [182169]
        automated match to d1gn8a_
        complexed with pny
      3. 1590794Domain d3nd7c_: 3nd7 C: [182170]
        automated match to d1gn8a_
        complexed with pny
      4. 1590795Domain d3nd7d_: 3nd7 D: [182171]
        automated match to d1gn8a_
        complexed with pny
      5. 1590796Domain d3nd7e_: 3nd7 E: [182172]
        automated match to d1gn8a_
        complexed with pny
      6. 1590797Domain d3nd7f_: 3nd7 F: [182173]
        automated match to d1gn8a_
        complexed with pny
  18. 1590798Francisella tularensis [TaxId:177416] [196438] (2 PDB entries)
    1. Domains for 3n8h:
      1. 1590799Domain d3n8ha_: 3n8h A: [199939]
        automated match to d3n8hb_
        complexed with acy, amp, gol, pro
      2. 1590800Domain d3n8hb_: 3n8h B: [196439]
        automated match to d2ejca_
        complexed with acy, amp, gol, pro
    2. Domains for 3qtt:
      1. 1590801Domain d3qtta_: 3qtt A: [215410]
        automated match to d3n8hb_
        complexed with anp, bal, mg, pro
      2. 1590802Domain d3qttb_: 3qtt B: [215411]
        automated match to d3n8hb_
        complexed with anp, bal, mg, pro
  19. 1590803Helicobacter pylori [TaxId:85962] [193641] (2 PDB entries)
    1. Domain for 3nv7:
    2. Domains for 3otw:
      1. 1590805Domain d3otwa_: 3otw A: [200158]
        automated match to d3otwf_
        complexed with coa, so4
      2. 1590806Domain d3otwb_: 3otw B: [200159]
        automated match to d3otwf_
        complexed with coa, so4
      3. 1590807Domain d3otwc_: 3otw C: [200160]
        automated match to d3otwf_
        complexed with coa, so4
      4. 1590808Domain d3otwd_: 3otw D: [200161]
        automated match to d3otwf_
        complexed with coa, so4
      5. 1590809Domain d3otwe_: 3otw E: [200162]
        automated match to d3otwf_
        complexed with coa, so4
      6. 1590810Domain d3otwf_: 3otw F: [193642]
        automated match to d1gn8a_
        complexed with coa, so4
  20. 1590811Human (Homo sapiens) [TaxId:9606] [188230] (3 PDB entries)
    1. Domains for 2pid:
      1. 1590814Domain d2pida_: 2pid A: [167192]
        automated match to d1tyae_
        protein/RNA complex; complexed with ysa
      2. 1590815Domain d2pidb_: 2pid B: [167193]
        automated match to d1tyae_
        protein/RNA complex; complexed with ysa
    2. Domains for 2qjf:
      1. 1590812Domain d2qjfa2: 2qjf A:393-622 [205828]
        Other proteins in same PDB: d2qjfa1, d2qjfb1
        automated match to d1jhda2
        complexed with adx, k
      2. 1590813Domain d2qjfb2: 2qjf B:393-622 [205830]
        Other proteins in same PDB: d2qjfa1, d2qjfb1
        automated match to d1jhda2
        complexed with adx, k
    3. Domains for 3zxi:
      1. 1590816Domain d3zxia_: 3zxi A: [186656]
        automated match to d1tyae_
        protein/RNA complex; complexed with tya
      2. 1590817Domain d3zxib_: 3zxi B: [186657]
        automated match to d1tyae_
        protein/RNA complex; complexed with tya
  21. 1590818Mycobacterium smegmatis [TaxId:246196] [231529] (2 PDB entries)
    1. Domain for 2x1l:
    2. Domain for 2x1m:
  22. 1590821Mycobacterium tuberculosis [TaxId:1773] [226769] (3 PDB entries)
    1. Domains for 3nba:
      1. 1590830Domain d3nbaa_: 3nba A: [213861]
        automated match to d3f3ma_
        complexed with apc, mg
      2. 1590831Domain d3nbab_: 3nba B: [213862]
        automated match to d3f3ma_
        complexed with apc, mg
      3. 1590832Domain d3nbac_: 3nba C: [213863]
        automated match to d3f3ma_
        complexed with apc, mg
      4. 1590833Domain d3nbad_: 3nba D: [213864]
        automated match to d3f3ma_
        complexed with apc, mg
    2. Domains for 3nbk:
      1. 1590822Domain d3nbka_: 3nbk A: [213869]
        automated match to d3f3ma_
        complexed with ni, pns
      2. 1590823Domain d3nbkb_: 3nbk B: [213870]
        automated match to d3f3ma_
        complexed with ni, pns
      3. 1590824Domain d3nbkc_: 3nbk C: [213871]
        automated match to d3f3ma_
        complexed with ni, pns
      4. 1590825Domain d3nbkd_: 3nbk D: [213872]
        automated match to d3f3ma_
        complexed with ni, pns
    3. Domains for 3pnb:
      1. 1590826Domain d3pnba_: 3pnb A: [214877]
        automated match to d3f3ma_
        complexed with coa
      2. 1590827Domain d3pnbb_: 3pnb B: [214878]
        automated match to d3f3ma_
        complexed with coa
      3. 1590828Domain d3pnbc_: 3pnb C: [214879]
        automated match to d3f3ma_
        complexed with coa
      4. 1590829Domain d3pnbd_: 3pnb D: [214880]
        automated match to d3f3ma_
        complexed with coa
  23. 1590834Mycoplasma pneumoniae [TaxId:272634] [188426] (1 PDB entry)
  24. 1590839Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] [225990] (1 PDB entry)
  25. 1590843Pseudomonas aeruginosa [TaxId:287] [254992] (3 PDB entries)
    1. Domain for 1yul:
    2. Domains for 1yum:
      1. 1590844Domain d1yuma_: 1yum A: [241067]
        automated match to d1k4kd_
        complexed with cit, ncn
      2. 1590845Domain d1yumb_: 1yum B: [241068]
        automated match to d1k4kd_
        complexed with cit, ncn
      3. 1590846Domain d1yumc_: 1yum C: [241069]
        automated match to d1k4kd_
        complexed with cit, ncn
      4. 1590847Domain d1yumd_: 1yum D: [241070]
        automated match to d1k4kd_
        complexed with cit, ncn
    3. Domains for 1yun:
      1. 1590849Domain d1yuna_: 1yun A: [241071]
        automated match to d1k4kd_
        complexed with atp, mg
      2. 1590850Domain d1yunb_: 1yun B: [241072]
        automated match to d1k4kd_
        complexed with atp, mg
  26. 1590851Pyrococcus horikoshii [TaxId:53953] [255901] (1 PDB entry)
  27. 1590854Soybean (Glycine max) [TaxId:3847] [237649] (1 PDB entry)
  28. 1590863Staphylococcus aureus [TaxId:1280] [189083] (1 PDB entry)
  29. 1590865Staphylococcus aureus [TaxId:196620] [237670] (3 PDB entries)
    1. Domains for 4nah:
      1. 1590869Domain d4naha_: 4nah A: [253925]
        automated match to d4naua_
        complexed with 2vj, ags
      2. 1590870Domain d4nahb_: 4nah B: [253926]
        automated match to d4naua_
        complexed with 2vj, ags
      3. 1590871Domain d4nahc_: 4nah C: [253927]
        automated match to d4naua_
        complexed with 2vj, ags
      4. 1590872Domain d4nahd_: 4nah D: [253928]
        automated match to d4naua_
        complexed with 2vj, ags
      5. 1590873Domain d4nahe_: 4nah E: [253929]
        automated match to d4naua_
        complexed with 2vj, ags
      6. 1590874Domain d4nahf_: 4nah F: [253930]
        automated match to d4naua_
        complexed with 2vj, ags
    2. Domains for 4nat:
      1. 1590866Domain d4nata_: 4nat A: [253931]
        automated match to d4naua_
        complexed with 2w5, adp, epe
      2. 1590867Domain d4natb_: 4nat B: [253932]
        automated match to d4naua_
        complexed with 2w5, adp, epe
      3. 1590868Domain d4natc_: 4nat C: [253933]
        automated match to d4naua_
        complexed with 2w5, adp, epe
    3. Domains for 4nau:
      1. 1590875Domain d4naua_: 4nau A: [237671]
        automated match to d4e1aa_
        complexed with 2w3, ags
      2. 1590876Domain d4naub_: 4nau B: [240617]
        automated match to d4naua_
        complexed with 2w3, ags
      3. 1590877Domain d4nauc_: 4nau C: [240618]
        automated match to d4naua_
        complexed with 2w3, ags
  30. 1590878Staphylococcus aureus [TaxId:282458] [189403] (1 PDB entry)
  31. 1590881Staphylococcus aureus [TaxId:93061] [189395] (2 PDB entries)
    1. Domains for 3ag5:
      1. 1590884Domain d3ag5a_: 3ag5 A: [172140]
        automated match to d1v8fa_
      2. 1590885Domain d3ag5b_: 3ag5 B: [172141]
        automated match to d1v8fa_
    2. Domains for 3ag6:
      1. 1590882Domain d3ag6a_: 3ag6 A: [172142]
        automated match to d1v8fa_
        complexed with acy, paj, pg4
      2. 1590883Domain d3ag6b_: 3ag6 B: [172143]
        automated match to d1v8fa_
        complexed with acy, paj, pg4
  32. 1590886Synechococcus elongatus [TaxId:32046] [225113] (1 PDB entry)
  33. 1590889Thermotoga maritima [TaxId:2336] [225198] (2 PDB entries)
    1. Domain for 2o5r:
    2. Domain for 3afh:
  34. 1590892Trypanosoma brucei [TaxId:999953] [226467] (6 PDB entries)
    1. Domain for 4eg1:
    2. Domain for 4eg3:
    3. Domain for 4eg6:
    4. Domain for 4eg8:
    5. Domains for 4ega:
      1. 1590894Domain d4egaa1: 4ega A:238-606 [220494]
        Other proteins in same PDB: d4egaa2, d4egab2
        automated match to d1rqga2
        protein/RNA complex; complexed with 0p8, dms, gol, met, so4
      2. 1590895Domain d4egab1: 4ega B:237-606 [220496]
        Other proteins in same PDB: d4egaa2, d4egab2
        automated match to d1rqga2
        protein/RNA complex; complexed with 0p8, dms, gol, met, so4
    6. Domain for 4mvw:
  35. 1590900Trypanosome (Trypanosoma brucei) [TaxId:5691] [188998] (5 PDB entries)
    1. Domains for 3i05:
      1. 1590905Domain d3i05a_: 3i05 A: [177992]
        automated match to d1ulhb_
      2. 1590906Domain d3i05b_: 3i05 B: [177993]
        automated match to d1ulhb_
    2. Domain for 3tun:
    3. Domain for 3u1e:
    4. Domain for 3u1f:
    5. Domain for 3u1g:
  36. 1590907Vibrio parahaemolyticus [TaxId:670] [196584] (1 PDB entry)

More info for Protein automated matches from c.26.1.0: automated matches

Timeline for Protein automated matches from c.26.1.0: automated matches: