Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1510239Class b: All beta proteins [48724] (176 folds)
  3. 1535986Fold b.34: SH3-like barrel [50036] (21 superfamilies)
    barrel, partly opened; n*=4, S*=8; meander
    the last strand is interrupted by a turn of 3-10 helix
  4. 1536113Superfamily b.34.2: SH3-domain [50044] (2 families) (S)
  5. 1536554Family b.34.2.0: automated matches [191375] (1 protein)
    not a true family
  6. 1536555Protein automated matches [190457] (8 species)
    not a true protein

Species:

  1. 1536556Acanthamoeba castellanii [TaxId:5755] [187629] (1 PDB entry)
  2. 1536558Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [187372] (12 PDB entries)
    1. Domain for 1ruw:
    2. Domains for 1va7:
      1. 1536579Domain d1va7a_: 1va7 A: [197583]
        automated match to d1va7d_
        complexed with gol
      2. 1536580Domain d1va7b_: 1va7 B: [197584]
        automated match to d1va7d_
        complexed with gol
      3. 1536581Domain d1va7c_: 1va7 C: [197585]
        automated match to d1va7d_
        complexed with gol
      4. 1536582Domain d1va7d_: 1va7 D: [193842]
        automated match to d1yn8a_
        complexed with gol
    3. Domains for 1yn8:
      1. 1536568Domain d1yn8a_: 1yn8 A: [162260]
        automated match to d1uj0a_
        complexed with ca
      2. 1536569Domain d1yn8b_: 1yn8 B: [162261]
        automated match to d1uj0a_
        complexed with ca
      3. 1536570Domain d1yn8c_: 1yn8 C: [162262]
        automated match to d1uj0a_
        complexed with ca
      4. 1536571Domain d1yn8d_: 1yn8 D: [162263]
        automated match to d1uj0a_
        complexed with ca
      5. 1536572Domain d1yn8e_: 1yn8 E: [162264]
        automated match to d1uj0a_
        complexed with ca
      6. 1536573Domain d1yn8f_: 1yn8 F: [162265]
        automated match to d1uj0a_
        complexed with ca
    4. Domain for 1ynz:
    5. Domain for 1yp5:
    6. Domains for 1z9z:
      1. 1536576Domain d1z9za_: 1z9z A: [162426]
        automated match to d1fyna_
        complexed with so4
      2. 1536577Domain d1z9zb_: 1z9z B: [162427]
        automated match to d1fyna_
        complexed with so4
    7. Domains for 1zuy:
      1. 1536565Domain d1zuya_: 1zuy A: [241167]
        automated match to d1yp5a_
        complexed with ipa
      2. 1536566Domain d1zuyb_: 1zuy B: [241168]
        automated match to d1yp5a_
        complexed with ipa
    8. Domain for 1zx6:
    9. Domains for 2a28:
      1. 1536559Domain d2a28a_: 2a28 A: [162654]
        automated match to d1zuua1
      2. 1536560Domain d2a28b_: 2a28 B: [162655]
        automated match to d1zuua1
      3. 1536561Domain d2a28c_: 2a28 C: [162656]
        automated match to d1zuua1
      4. 1536562Domain d2a28d_: 2a28 D: [162657]
        automated match to d1zuua1
    10. Domain for 2btt:
    11. Domain for 2jt4:
    12. Domains for 2v1q:
      1. 1536563Domain d2v1qa_: 2v1q A: [168292]
        automated match to d1fyna_
        complexed with cl, na, pt
      2. 1536564Domain d2v1qb_: 2v1q B: [168293]
        automated match to d1fyna_
        complexed with cl, na, pt
  3. 1536585Chicken (Gallus gallus) [TaxId:9031] [225620] (7 PDB entries)
    1. Domains for 3fj5:
      1. 1536592Domain d3fj5a_: 3fj5 A: [209951]
        automated match to d1ynza_
        complexed with act, gol, pg4, pge, so4
      2. 1536593Domain d3fj5b_: 3fj5 B: [209952]
        automated match to d1ynza_
        complexed with act, gol, pg4, pge, so4
    2. Domains for 4jz4:
      1. 1536590Domain d4jz4a_: 4jz4 A: [261779]
        automated match to d1e6ga_
        complexed with epe, ni
      2. 1536591Domain d4jz4b_: 4jz4 B: [261778]
        automated match to d1e6ga_
        complexed with epe, ni
    3. Domain for 4le9:
    4. Domain for 4oml:
    5. Domain for 4omn:
    6. Domains for 4omo:
      1. 1536586Domain d4omoa_: 4omo A: [261542]
        automated match to d1e6ga_
        complexed with epe, ni; mutant
      2. 1536587Domain d4omob_: 4omo B: [261853]
        automated match to d1e6ga_
        complexed with epe, ni; mutant
    7. Domain for 4omp:
  4. 1536596Fruit fly (Drosophila melanogaster) [TaxId:7227] [233746] (1 PDB entry)
  5. 1536598Human (Homo sapiens) [TaxId:9606] [187598] (77 PDB entries)
    1. Domain for 1s1n:
    2. Domains for 1w6x:
      1. 1536632Domain d1w6xa_: 1w6x A: [161905]
        automated match to d1k4us_
      2. 1536633Domain d1w6xb_: 1w6x B: [161906]
        automated match to d1k4us_
    3. Domain for 1wxb:
    4. Domain for 1wxt:
    5. Domains for 1wyx:
      1. 1536602Domain d1wyxa_: 1wyx A: [162008]
        automated match to d1bk2a_
        complexed with edo, mg
      2. 1536603Domain d1wyxb_: 1wyx B: [162009]
        automated match to d1bk2a_
        complexed with edo, mg
    6. Domain for 1x2k:
    7. Domain for 1x2p:
    8. Domain for 1x2q:
    9. Domain for 1x69:
    10. Domain for 1z9q:
    11. Domain for 1zlm:
    12. Domain for 2cre:
    13. Domain for 2ct3:
    14. Domain for 2ct4:
    15. Domain for 2cub:
    16. Domains for 2d1x:
      1. 1536621Domain d2d1xa_: 2d1x A: [163553]
        automated match to d1jo8a_
        complexed with so4
      2. 1536622Domain d2d1xb_: 2d1x B: [163554]
        automated match to d1jo8a_
        complexed with so4
      3. 1536623Domain d2d1xc_: 2d1x C: [163555]
        automated match to d1jo8a_
        complexed with so4
      4. 1536624Domain d2d1xd_: 2d1x D: [163556]
        automated match to d1jo8a_
        complexed with so4
    17. Domain for 2d8h:
    18. Domain for 2dbm:
    19. Domain for 2dil:
    20. Domain for 2dl3:
    21. Domain for 2dl4:
    22. Domain for 2dl7:
    23. Domain for 2dl8:
    24. Domain for 2dlm:
    25. Domain for 2dm1:
    26. Domain for 2dnu:
    27. Domain for 2ecz:
    28. Domain for 2ed0:
    29. Domain for 2ed1:
    30. Domain for 2ega:
    31. Domain for 2ew3:
    32. Domain for 2eyw:
    33. Domain for 2fei:
    34. Domain for 2frw:
    35. Domain for 2gqi:
    36. Domains for 2j05:
      1. 1536608Domain d2j05a_: 2j05 A: [198083]
        automated match to d2j05b_
      2. 1536609Domain d2j05b_: 2j05 B: [193210]
        automated match to d3i35a_
    37. Domains for 2j06:
      1. 1536611Domain d2j06a_: 2j06 A: [204915]
        automated match to d2j05b_
      2. 1536612Domain d2j06b_: 2j06 B: [204916]
        automated match to d2j05b_
    38. Domains for 2j6k:
      1. 1536648Domain d2j6ka_: 2j6k A: [204962]
        automated match to d3i35a_
        complexed with na
      2. 1536649Domain d2j6kb_: 2j6k B: [204963]
        automated match to d3i35a_
        complexed with na
      3. 1536650Domain d2j6kc_: 2j6k C: [204964]
        automated match to d3i35a_
        complexed with na
      4. 1536651Domain d2j6kd_: 2j6k D: [204965]
        automated match to d3i35a_
        complexed with na
      5. 1536652Domain d2j6ke_: 2j6k E: [204966]
        automated match to d3i35a_
        complexed with na
      6. 1536653Domain d2j6kf_: 2j6k F: [204967]
        automated match to d3i35a_
        complexed with na
      7. 1536654Domain d2j6kg_: 2j6k G: [204968]
        automated match to d3i35a_
        complexed with na
      8. 1536655Domain d2j6kh_: 2j6k H: [204969]
        automated match to d3i35a_
        complexed with na
      9. 1536656Domain d2j6ki_: 2j6k I: [204970]
        automated match to d3i35a_
        complexed with na
      10. 1536657Domain d2j6kj_: 2j6k J: [204971]
        automated match to d3i35a_
        complexed with na
      11. 1536658Domain d2j6kk_: 2j6k K: [204972]
        automated match to d3i35a_
        complexed with na
      12. 1536659Domain d2j6kl_: 2j6k L: [204973]
        automated match to d3i35a_
        complexed with na
    39. Domain for 2js0:
    40. Domain for 2js2:
    41. Domain for 2jw4:
    42. Domain for 2k2m:
    43. Domain for 2k6d:
    44. Domain for 2k9g:
    45. Domain for 2kt1:
    46. Domain for 2l0a:
    47. Domain for 2lj0:
    48. Domain for 2lj1:
    49. Domain for 2lmj:
    50. Domain for 2m51:
    51. Domain for 2mio:
    52. Domain for 2nwm:
    53. Domain for 2o2w:
    54. Domain for 2o31:
    55. Domain for 2o9s:
    56. Domain for 2o9v:
    57. Domains for 2rf0:
      1. 1536613Domain d2rf0a_: 2rf0 A: [243672]
        automated match to d2d1xc_
        complexed with edo
      2. 1536614Domain d2rf0b_: 2rf0 B: [243673]
        automated match to d2d1xc_
        complexed with edo
      3. 1536615Domain d2rf0c_: 2rf0 C: [243674]
        automated match to d2d1xc_
        complexed with edo
      4. 1536616Domain d2rf0d_: 2rf0 D: [243675]
        automated match to d2d1xc_
        complexed with edo
    58. Domain for 2ydl:
    59. Domain for 2ysq:
    60. Domain for 2yun:
    61. Domain for 2yup:
    62. Domain for 3nhn:
    63. Domains for 3o5z:
      1. 1536630Domain d3o5za_: 3o5z A: [182817]
        automated match to d1pnja_
        complexed with cl, mpd
      2. 1536631Domain d3o5zb_: 3o5z B: [182818]
        automated match to d1pnja_
        complexed with cl, mpd
    64. Domains for 3rbb:
      1. 1536645Domain d3rbbb_: 3rbb B: [233424]
        Other proteins in same PDB: d3rbba_, d3rbbc_
        automated match to d1h92a_
        complexed with edo
      2. 1536646Domain d3rbbd_: 3rbb D: [233425]
        Other proteins in same PDB: d3rbba_, d3rbbc_
        automated match to d1h92a_
        complexed with edo
    65. Domains for 3vs7:
      1. 1536663Domain d3vs7a1: 3vs7 A:85-146 [250670]
        Other proteins in same PDB: d3vs7a2, d3vs7a3, d3vs7b2, d3vs7b3
        automated match to d1fmka1
        complexed with ca, cl, ks1
      2. 1536664Domain d3vs7b1: 3vs7 B:85-146 [250673]
        Other proteins in same PDB: d3vs7a2, d3vs7a3, d3vs7b2, d3vs7b3
        automated match to d1fmka1
        complexed with ca, cl, ks1
    66. Domains for 4a63:
      1. 1536639Domain d4a63b2: 4a63 B:1056-1121 [234035]
        Other proteins in same PDB: d4a63a_, d4a63b1, d4a63c_, d4a63d1, d4a63e_, d4a63f1, d4a63g_, d4a63h1, d4a63i_, d4a63j1, d4a63k_, d4a63l1
        automated match to d1ycsb2
        complexed with act, zn
      2. 1536640Domain d4a63d2: 4a63 D:1056-1120 [234037]
        Other proteins in same PDB: d4a63a_, d4a63b1, d4a63c_, d4a63d1, d4a63e_, d4a63f1, d4a63g_, d4a63h1, d4a63i_, d4a63j1, d4a63k_, d4a63l1
        automated match to d1ycsb2
        complexed with act, zn
      3. 1536641Domain d4a63f2: 4a63 F:1056-1121 [234033]
        Other proteins in same PDB: d4a63a_, d4a63b1, d4a63c_, d4a63d1, d4a63e_, d4a63f1, d4a63g_, d4a63h1, d4a63i_, d4a63j1, d4a63k_, d4a63l1
        automated match to d1ycsb2
        complexed with act, zn
      4. 1536642Domain d4a63h2: 4a63 H:1056-1120 [234041]
        Other proteins in same PDB: d4a63a_, d4a63b1, d4a63c_, d4a63d1, d4a63e_, d4a63f1, d4a63g_, d4a63h1, d4a63i_, d4a63j1, d4a63k_, d4a63l1
        automated match to d1ycsb2
        complexed with act, zn
      5. 1536643Domain d4a63j2: 4a63 J:1056-1122 [234039]
        Other proteins in same PDB: d4a63a_, d4a63b1, d4a63c_, d4a63d1, d4a63e_, d4a63f1, d4a63g_, d4a63h1, d4a63i_, d4a63j1, d4a63k_, d4a63l1
        automated match to d1ycsb2
        complexed with act, zn
      6. 1536644Domain d4a63l2: 4a63 L:1056-1120 [239965]
        Other proteins in same PDB: d4a63a_, d4a63b1, d4a63c_, d4a63d1, d4a63e_, d4a63f1, d4a63g_, d4a63h1, d4a63i_, d4a63j1, d4a63k_, d4a63l1
        automated match to d4a63f2
        complexed with act, zn
    67. Domains for 4cc4:
      1. 1536660Domain d4cc4b_: 4cc4 B: [234303]
        Other proteins in same PDB: d4cc4a1, d4cc4a2, d4cc4c1, d4cc4c2, d4cc4e1, d4cc4e2
        automated match to d4cc4f_
        complexed with cl, gol, pe4, po4, so4
      2. 1536661Domain d4cc4d_: 4cc4 D: [228584]
        Other proteins in same PDB: d4cc4a1, d4cc4a2, d4cc4c1, d4cc4c2, d4cc4e1, d4cc4e2
        automated match to d2xmfa_
        complexed with cl, gol, pe4, po4, so4
      3. 1536662Domain d4cc4f_: 4cc4 F: [228585]
        Other proteins in same PDB: d4cc4a1, d4cc4a2, d4cc4c1, d4cc4c2, d4cc4e1, d4cc4e2
        automated match to d2xmfa_
        complexed with cl, gol, pe4, po4, so4
    68. Domain for 4d8k:
    69. Domains for 4e6r:
      1. 1536627Domain d4e6ra_: 4e6r A: [220339]
        automated match to d3ulrb_
        complexed with imd, unl, zn
      2. 1536628Domain d4e6rb_: 4e6r B: [220340]
        automated match to d3ulrb_
        complexed with imd, unl, zn
    70. Domains for 4esr:
      1. 1536605Domain d4esra_: 4esr A: [220791]
        automated match to d1k4us_
        complexed with peg
      2. 1536606Domain d4esrb_: 4esr B: [220792]
        automated match to d1k4us_
        complexed with peg
    71. Domains for 4fss:
      1. 1536634Domain d4fssa_: 4fss A: [221499]
        automated match to d3i35a_
        complexed with cl, gol, po4
      2. 1536635Domain d4fssb_: 4fss B: [221500]
        automated match to d3i35a_
        complexed with cl, gol, po4
      3. 1536636Domain d4fssc_: 4fss C: [221501]
        automated match to d3i35a_
        complexed with cl, gol, po4
    72. Domains for 4glm:
      1. 1536617Domain d4glma_: 4glm A: [202275]
        automated match to d4glmc_
        complexed with unx
      2. 1536618Domain d4glmb_: 4glm B: [202276]
        automated match to d4glmc_
        complexed with unx
      3. 1536619Domain d4glmc_: 4glm C: [193366]
        automated match to d1k4us_
        complexed with unx
      4. 1536620Domain d4glmd_: 4glm D: [202277]
        automated match to d4glmc_
        complexed with unx
    73. Domain for 4ln2:
    74. Domain for 4lnp:
    75. Domains for 4lue:
      1. 1536665Domain d4luea1: 4lue A:85-146 [253694]
        Other proteins in same PDB: d4luea2, d4luea3, d4lueb2, d4lueb3
        automated match to d1fmka1
        complexed with ca, cl, gol, imd, vse
      2. 1536666Domain d4lueb1: 4lue B:85-146 [253697]
        Other proteins in same PDB: d4luea2, d4luea3, d4lueb2, d4lueb3
        automated match to d1fmka1
        complexed with ca, cl, gol, imd, vse
    76. Domain for 4orz:
    77. Domains for 4u5w:
      1. 1536625Domain d4u5wb1: 4u5w B:83-145 [259134]
        Other proteins in same PDB: d4u5wa_, d4u5wd2
        automated match to d1ad5a1
        complexed with iod, mpd
      2. 1536626Domain d4u5wd1: 4u5w D:83-145 [259127]
        Other proteins in same PDB: d4u5wa_, d4u5wd2
        automated match to d1ad5a1
        complexed with iod, mpd
  6. 1536716Mouse (Mus musculus) [TaxId:10090] [189303] (21 PDB entries)
    1. Domain for 1wxu:
    2. Domain for 1x43:
    3. Domain for 2cuc:
    4. Domain for 2d8j:
    5. Domain for 2da9:
    6. Domain for 2djq:
    7. Domain for 2enm:
    8. Domain for 2eqi:
    9. Domains for 2gnc:
      1. 1536719Domain d2gnca_: 2gnc A: [204427]
        automated match to d2xmfa_
      2. 1536720Domain d2gncb_: 2gnc B: [204428]
        automated match to d2xmfa_
    10. Domain for 2jte:
    11. Domain for 2krm:
    12. Domain for 2krn:
    13. Domain for 2kro:
    14. Domain for 2lz6:
    15. Domain for 2m0y:
    16. Domain for 2mcn:
    17. Domain for 2x3w:
    18. Domain for 2xmf:
    19. Domain for 2yuo:
    20. Domain for 3uf4:
    21. Domain for 3ulr:
  7. 1536739Norway rat (Rattus norvegicus) [TaxId:10116] [189104] (3 PDB entries)
    1. Domain for 2knb:
    2. Domain for 3c0c:
    3. Domains for 3iql:
      1. 1536740Domain d3iqla_: 3iql A: [178559]
        automated match to d1k76a_
        complexed with cl
      2. 1536741Domain d3iqlb_: 3iql B: [178560]
        automated match to d1k76a_
        complexed with cl
  8. 1536744Slime mold (Dictyostelium discoideum) [TaxId:44689] [255229] (1 PDB entry)

More info for Protein automated matches from b.34.2.0: automated matches

Timeline for Protein automated matches from b.34.2.0: automated matches: