SCOPe 2.03: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.03
Class b: All beta proteins [48724] (174 folds)
Fold b.34: SH3-like barrel [50036] (21 superfamilies)
barrel, partly opened; n*=4, S*=8; meander
the last strand is interrupted by a turn of 3-10 helix
Superfamily b.34.2: SH3-domain [50044] (2 families)
Family b.34.2.0: automated matches [191375] (1 protein)
not a true family
Protein automated matches [190457] (7 species)
not a true protein

Species:

Acanthamoeba castellanii [TaxId:5755] [187629] (1 PDB entry)
- Domain for 2drk:
  - Domain d2drka_: 2drk A: [163663]
    automated match to d2semb_
    complexed with gol, so4
Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [187372] (9 PDB entries)
1. Domain for 1ruw:
  - Domain d1ruwa_: 1ruw A: [193850]
    automated match to d1yn8a_
    complexed with imd
2. Domains for 1va7:
  1. Domain d1va7a_: 1va7 A: [197583]
    automated match to d1va7d_
    complexed with gol
  2. Domain d1va7b_: 1va7 B: [197584]
    automated match to d1va7d_
    complexed with gol
  3. Domain d1va7c_: 1va7 C: [197585]
    automated match to d1va7d_
    complexed with gol
  4. Domain d1va7d_: 1va7 D: [193842]
    automated match to d1yn8a_
    complexed with gol
3. Domains for 1yn8:
  1. Domain d1yn8a_: 1yn8 A: [162260]
    automated match to d1uj0a_
    complexed with ca
  2. Domain d1yn8b_: 1yn8 B: [162261]
    automated match to d1uj0a_
    complexed with ca
  3. Domain d1yn8c_: 1yn8 C: [162262]
    automated match to d1uj0a_
    complexed with ca
  4. Domain d1yn8d_: 1yn8 D: [162263]
    automated match to d1uj0a_
    complexed with ca
  5. Domain d1yn8e_: 1yn8 E: [162264]
    automated match to d1uj0a_
    complexed with ca
  6. Domain d1yn8f_: 1yn8 F: [162265]
    automated match to d1uj0a_
    complexed with ca
4. Domain for 1ynz:
  - Domain d1ynza_: 1ynz A: [162267]
    automated match to d1gfca_
5. Domain for 1yp5:
  - Domain d1yp5a_: 1yp5 A: [230423]
    automated match to d1ruwa_
6. Domains for 1z9z:
  1. Domain d1z9za_: 1z9z A: [162426]
    automated match to d1fyna_
    complexed with so4
  2. Domain d1z9zb_: 1z9z B: [162427]
    automated match to d1fyna_
    complexed with so4
7. Domain for 1zx6:
  - Domain d1zx6a_: 1zx6 A: [162622]
    automated match to d1gfca_
8. Domains for 2a28:
  1. Domain d2a28a_: 2a28 A: [162654]
    automated match to d1zuua1
  2. Domain d2a28b_: 2a28 B: [162655]
    automated match to d1zuua1
  3. Domain d2a28c_: 2a28 C: [162656]
    automated match to d1zuua1
  4. Domain d2a28d_: 2a28 D: [162657]
    automated match to d1zuua1
9. Domains for 2v1q:
  1. Domain d2v1qa_: 2v1q A: [168292]
    automated match to d1fyna_
    complexed with cl, na, pt
  2. Domain d2v1qb_: 2v1q B: [168293]
    automated match to d1fyna_
    complexed with cl, na, pt
Chicken (Gallus gallus) [TaxId:9031] [225620] (1 PDB entry)
- Domains for 3fj5:
  1. Domain d3fj5a_: 3fj5 A: [209951]
    automated match to d1ynza_
    complexed with act, gol, pg4, pge, so4
  2. Domain d3fj5b_: 3fj5 B: [209952]
    automated match to d1ynza_
    complexed with act, gol, pg4, pge, so4
Drosophila melanogaster [TaxId:7227] [233746] (1 PDB entry)
- Domain for 3tvt:
  - Domain d3tvta1: 3tvt A:602-776 [233747]
    Other proteins in same PDB: d3tvta2
    automated match to d1kjwa1

Human (Homo sapiens) [TaxId:9606] [187598] (23 PDB entries)

Domains for 1w6x:
1. Domain d1w6xa_: 1w6x A: [161905]
  automated match to d1k4us_
2. Domain d1w6xb_: 1w6x B: [161906]
  automated match to d1k4us_
Domains for 1wyx:
1. Domain d1wyxa_: 1wyx A: [162008]
  automated match to d1bk2a_
  complexed with edo, mg
2. Domain d1wyxb_: 1wyx B: [162009]
  automated match to d1bk2a_
  complexed with edo, mg
Domain for 1zlm:
- Domain d1zlma_: 1zlm A: [193821]
  automated match to d2ak5b_
Domains for 2d1x:
1. Domain d2d1xa_: 2d1x A: [163553]
  automated match to d1jo8a_
  complexed with so4
2. Domain d2d1xb_: 2d1x B: [163554]
  automated match to d1jo8a_
  complexed with so4
3. Domain d2d1xc_: 2d1x C: [163555]
  automated match to d1jo8a_
  complexed with so4
4. Domain d2d1xd_: 2d1x D: [163556]
  automated match to d1jo8a_
  complexed with so4
Domains for 2j05:
1. Domain d2j05a_: 2j05 A: [198083]
  automated match to d2j05b_
2. Domain d2j05b_: 2j05 B: [193210]
  automated match to d3i35a_
Domains for 2j06:
1. Domain d2j06a_: 2j06 A: [204915]
  automated match to d2j05b_
2. Domain d2j06b_: 2j06 B: [204916]
  automated match to d2j05b_
Domains for 2j6k:
1. Domain d2j6ka_: 2j6k A: [204962]
  automated match to d3i35a_
  complexed with na
2. Domain d2j6kb_: 2j6k B: [204963]
  automated match to d3i35a_
  complexed with na
3. Domain d2j6kc_: 2j6k C: [204964]
  automated match to d3i35a_
  complexed with na
4. Domain d2j6kd_: 2j6k D: [204965]
  automated match to d3i35a_
  complexed with na
5. Domain d2j6ke_: 2j6k E: [204966]
  automated match to d3i35a_
  complexed with na
6. Domain d2j6kf_: 2j6k F: [204967]
  automated match to d3i35a_
  complexed with na
7. Domain d2j6kg_: 2j6k G: [204968]
  automated match to d3i35a_
  complexed with na
8. Domain d2j6kh_: 2j6k H: [204969]
  automated match to d3i35a_
  complexed with na
9. Domain d2j6ki_: 2j6k I: [204970]
  automated match to d3i35a_
  complexed with na
10. Domain d2j6kj_: 2j6k J: [204971]
  automated match to d3i35a_
  complexed with na
11. Domain d2j6kk_: 2j6k K: [204972]
  automated match to d3i35a_
  complexed with na
12. Domain d2j6kl_: 2j6k L: [204973]
  automated match to d3i35a_
  complexed with na
Domain for 2o2w:
- Domain d2o2wa_: 2o2w A: [166508]
  automated match to d1oota_
Domain for 2o31:
- Domain d2o31a_: 2o31 A: [166513]
  automated match to d1oota_
  complexed with fmt
Domain for 2o9s:
- Domain d2o9sa_: 2o9s A: [166596]
  automated match to d1oota_
  complexed with cl, na, scn
Domain for 2o9v:
- Domain d2o9va_: 2o9v A: [166598]
  automated match to d1oota_
Domain for 2ydl:
- Domain d2ydla_: 2ydl A: [195679]
  automated match to d1kfza_
Domain for 3nhn:
- Domain d3nhna1: 3nhn A:83-145 [213953]
  Other proteins in same PDB: d3nhna2
  automated match to d2ptka1
Domains for 3o5z:
1. Domain d3o5za_: 3o5z A: [182817]
  automated match to d1pnja_
  complexed with cl, mpd
2. Domain d3o5zb_: 3o5z B: [182818]
  automated match to d1pnja_
  complexed with cl, mpd
Domains for 3rbb:
1. Domain d3rbbb_: 3rbb B: [233424]
  Other proteins in same PDB: d3rbba_, d3rbbc_
  automated match to d1h92a_
  complexed with edo
2. Domain d3rbbd_: 3rbb D: [233425]
  Other proteins in same PDB: d3rbba_, d3rbbc_
  automated match to d1h92a_
  complexed with edo

Domains for 4a63:

Domain d4a63b2: 4a63 B:1056-1121 [234035]
Other proteins in same PDB: d4a63a_, d4a63b1, d4a63c_, d4a63d1, d4a63e_, d4a63f1, d4a63g_, d4a63h1, d4a63i_, d4a63j1, d4a63k_
automated match to d1ycsb2
complexed with act, zn

Domain d4a63d2: 4a63 D:1056-1120 [234037]
Other proteins in same PDB: d4a63a_, d4a63b1, d4a63c_, d4a63d1, d4a63e_, d4a63f1, d4a63g_, d4a63h1, d4a63i_, d4a63j1, d4a63k_
automated match to d1ycsb2
complexed with act, zn

Domain d4a63f2: 4a63 F:1056-1121 [234033]
Other proteins in same PDB: d4a63a_, d4a63b1, d4a63c_, d4a63d1, d4a63e_, d4a63f1, d4a63g_, d4a63h1, d4a63i_, d4a63j1, d4a63k_
automated match to d1ycsb2
complexed with act, zn

Domain d4a63h2: 4a63 H:1056-1120 [234041]
Other proteins in same PDB: d4a63a_, d4a63b1, d4a63c_, d4a63d1, d4a63e_, d4a63f1, d4a63g_, d4a63h1, d4a63i_, d4a63j1, d4a63k_
automated match to d1ycsb2
complexed with act, zn

Domain d4a63j2: 4a63 J:1056-1122 [234039]
Other proteins in same PDB: d4a63a_, d4a63b1, d4a63c_, d4a63d1, d4a63e_, d4a63f1, d4a63g_, d4a63h1, d4a63i_, d4a63j1, d4a63k_
automated match to d1ycsb2
complexed with act, zn

Domains for 4cc4:
1. Domain d4cc4b_: 4cc4 B: [234303]
  Other proteins in same PDB: d4cc4a1, d4cc4a2, d4cc4c1, d4cc4c2, d4cc4e1, d4cc4e2
  automated match to d4cc4f_
  complexed with cl, gol, pe4, po4, so4
2. Domain d4cc4d_: 4cc4 D: [228584]
  Other proteins in same PDB: d4cc4a1, d4cc4a2, d4cc4c1, d4cc4c2, d4cc4e1, d4cc4e2
  automated match to d2xmfa_
  complexed with cl, gol, pe4, po4, so4
3. Domain d4cc4f_: 4cc4 F: [228585]
  Other proteins in same PDB: d4cc4a1, d4cc4a2, d4cc4c1, d4cc4c2, d4cc4e1, d4cc4e2
  automated match to d2xmfa_
  complexed with cl, gol, pe4, po4, so4
Domain for 4d8k:
- Domain d4d8ka1: 4d8k A:64-120 [219572]
  Other proteins in same PDB: d4d8ka2
  automated match to d1opka1
  complexed with gol, so4
Domains for 4e6r:
1. Domain d4e6ra_: 4e6r A: [220339]
  automated match to d3ulrb_
  complexed with imd, unl, zn
2. Domain d4e6rb_: 4e6r B: [220340]
  automated match to d3ulrb_
  complexed with imd, unl, zn
Domains for 4esr:
1. Domain d4esra_: 4esr A: [220791]
  automated match to d1k4us_
  complexed with peg
2. Domain d4esrb_: 4esr B: [220792]
  automated match to d1k4us_
  complexed with peg
Domains for 4fss:
1. Domain d4fssa_: 4fss A: [221499]
  automated match to d3i35a_
  complexed with cl, gol, po4
2. Domain d4fssb_: 4fss B: [221500]
  automated match to d3i35a_
  complexed with cl, gol, po4
3. Domain d4fssc_: 4fss C: [221501]
  automated match to d3i35a_
  complexed with cl, gol, po4
Domains for 4glm:
1. Domain d4glma_: 4glm A: [202275]
  automated match to d4glmc_
  complexed with unx
2. Domain d4glmb_: 4glm B: [202276]
  automated match to d4glmc_
  complexed with unx
3. Domain d4glmc_: 4glm C: [193366]
  automated match to d1k4us_
  complexed with unx
4. Domain d4glmd_: 4glm D: [202277]
  automated match to d4glmc_
  complexed with unx
Domain for 4orz:
- Domain d4orza_: 4orz A: [238063]
  Other proteins in same PDB: d4orzb_, d4orzc_
  automated match to d1awwa_

Mouse (Mus musculus) [TaxId:10090] [189303] (5 PDB entries)
1. Domains for 2gnc:
  1. Domain d2gnca_: 2gnc A: [204427]
    automated match to d2xmfa_
  2. Domain d2gncb_: 2gnc B: [204428]
    automated match to d2xmfa_
2. Domain for 2x3w:
  - Domain d2x3wd_: 2x3w D: [169849]
    automated match to d1arka_
3. Domain for 2xmf:
  - Domain d2xmfa_: 2xmf A: [196242]
    automated match to d2drka_
    complexed with dia
4. Domain for 3uf4:
  - Domain d3uf4a1: 3uf4 A:85-146 [217330]
    Other proteins in same PDB: d3uf4a2
    automated match to d1fmka1
    complexed with cl, gol, na
5. Domain for 3ulr:
  - Domain d3ulrb_: 3ulr B: [186335]
    automated match to d1jo8a_
Norway rat (Rattus norvegicus) [TaxId:10116] [189104] (2 PDB entries)
1. Domain for 3c0c:
  - Domain d3c0ca_: 3c0c A: [195097]
    automated match to d3iqlb_
2. Domains for 3iql:
  1. Domain d3iqla_: 3iql A: [178559]
    automated match to d1k76a_
    complexed with cl
  2. Domain d3iqlb_: 3iql B: [178560]
    automated match to d1k76a_
    complexed with cl

More info for Protein automated matches from b.34.2.0: automated matches

Timeline for Protein automated matches from b.34.2.0: automated matches:

Protein automated matches from b.34.2.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from b.34.2.0: automated matches appears in SCOPe 2.02
Protein automated matches from b.34.2.0: automated matches appears in SCOPe 2.04
Protein automated matches from b.34.2.0: automated matches appears in the current release, SCOPe 2.08