Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2304252Fold a.3: Cytochrome c [46625] (1 superfamily)
    core: 3 helices; folded leaf, opened
  4. 2304253Superfamily a.3.1: Cytochrome c [46626] (9 families) (S)
    covalently-bound heme completes the core
  5. 2305066Family a.3.1.0: automated matches [191374] (1 protein)
    not a true family
  6. 2305067Protein automated matches [190453] (25 species)
    not a true protein

Species:

  1. 2305068Achromobacter xylosoxidans [TaxId:85698] [188921] (1 PDB entry)
  2. 2305070Aquifex aeolicus [TaxId:224324] [268117] (1 PDB entry)
  3. 2305075Aquifex aeolicus [TaxId:63363] [189042] (1 PDB entry)
  4. 2305077Candidatus kuenenia [TaxId:174633] [346608] (1 PDB entry)
  5. 2305079Chlorobium tepidum [TaxId:194439] [228039] (1 PDB entry)
  6. 2305082Geobacter sulfurreducens [TaxId:243231] [226497] (6 PDB entries)
    1. Domains for 4aal:
      1. 2305086Domain d4aala1: 4aal A:23-188 [218750]
        automated match to d1nmla1
        complexed with act, ca, eoh, hec, po4
      2. 2305087Domain d4aala2: 4aal A:189-346 [218751]
        automated match to d1nmla2
        complexed with act, ca, eoh, hec, po4
      3. 2305088Domain d4aalb1: 4aal B:23-188 [218752]
        automated match to d1nmla1
        complexed with act, ca, eoh, hec, po4
      4. 2305089Domain d4aalb2: 4aal B:189-346 [218753]
        automated match to d1nmla2
        complexed with act, ca, eoh, hec, po4
    2. Domains for 4aam:
      1. 2305090Domain d4aama1: 4aam A:23-188 [218754]
        automated match to d1nmla1
        complexed with ca, hec, so4
      2. 2305091Domain d4aama2: 4aam A:189-346 [218755]
        automated match to d1nmla2
        complexed with ca, hec, so4
    3. Domains for 4aan:
      1. 2305083Domain d4aana1: 4aan A:24-188 [218756]
        automated match to d1nmla1
        complexed with bu3, ca, hec
      2. 2305084Domain d4aana2: 4aan A:189-346 [218757]
        automated match to d1nmla2
        complexed with bu3, ca, hec
    4. Domains for 4aao:
      1. 2305092Domain d4aaoa1: 4aao A:23-188 [218758]
        automated match to d1nmla1
        complexed with ca, hec, so4
      2. 2305093Domain d4aaoa2: 4aao A:189-346 [218759]
        automated match to d1nmla2
        complexed with ca, hec, so4
      3. 2305094Domain d4aaob1: 4aao B:23-188 [218760]
        automated match to d1nmla1
        complexed with ca, hec, so4
      4. 2305095Domain d4aaob2: 4aao B:189-345 [218761]
        automated match to d1nmla2
        complexed with ca, hec, so4
    5. Domain for 5mcs:
    6. Domain for 6u97:
  7. 2305097Geobacter sulfurreducens [TaxId:35554] [188580] (6 PDB entries)
    1. Domain for 3cu4:
    2. Domain for 3dp5:
    3. Domains for 3hq6:
      1. 2305104Domain d3hq6a1: 3hq6 A:22-188 [211210]
        automated match to d1nmla1
        complexed with ca, hem
      2. 2305105Domain d3hq6a2: 3hq6 A:189-345 [211211]
        automated match to d1nmla2
        complexed with ca, hem
      3. 2305106Domain d3hq6b1: 3hq6 B:22-188 [211212]
        automated match to d1nmla1
        complexed with ca, hem
      4. 2305107Domain d3hq6b2: 3hq6 B:189-345 [211213]
        automated match to d1nmla2
        complexed with ca, hem
    4. Domains for 3hq7:
      1. 2305108Domain d3hq7a1: 3hq7 A:20-188 [211214]
        automated match to d1nmla1
        complexed with ca, hem
      2. 2305109Domain d3hq7a2: 3hq7 A:189-345 [211215]
        automated match to d1nmla2
        complexed with ca, hem
    5. Domains for 3hq8:
      1. 2305110Domain d3hq8a1: 3hq8 A:22-188 [211216]
        automated match to d1nmla1
        complexed with ca, hem, imd
      2. 2305111Domain d3hq8a2: 3hq8 A:189-345 [211217]
        automated match to d1nmla2
        complexed with ca, hem, imd
      3. 2305112Domain d3hq8b1: 3hq8 B:22-188 [211218]
        automated match to d1nmla1
        complexed with ca, hem, imd
      4. 2305113Domain d3hq8b2: 3hq8 B:189-345 [211219]
        automated match to d1nmla2
        complexed with ca, hem, imd
    6. Domains for 3hq9:
      1. 2305099Domain d3hq9a1: 3hq9 A:22-188 [211220]
        automated match to d1nmla1
        complexed with bu3, ca, hem, imd, oxl
      2. 2305100Domain d3hq9a2: 3hq9 A:189-345 [211221]
        automated match to d1nmla2
        complexed with bu3, ca, hem, imd, oxl
      3. 2305101Domain d3hq9b1: 3hq9 B:21-188 [211222]
        automated match to d1nmla1
        complexed with bu3, ca, hem, imd, oxl
      4. 2305102Domain d3hq9b2: 3hq9 B:189-345 [211223]
        automated match to d1nmla2
        complexed with bu3, ca, hem, imd, oxl
  8. 2305114Hydrogenophilus thermoluteolus [TaxId:297] [187588] (1 PDB entry)
  9. 2305116Hyphomicrobium denitrificans [TaxId:53399] [187593] (1 PDB entry)
  10. 2305119Methylobacterium extorquens [311180] (1 PDB entry)
  11. 2305121Methylophaga aminisulfidivorans [TaxId:1026882] [389919] (1 PDB entry)
  12. 2305126Neisseria gonorrhoeae [TaxId:485] [365812] (2 PDB entries)
    1. Domains for 6fu3:
      1. 2305127Domain d6fu3a1: 6fu3 A:1-170 [365813]
        Other proteins in same PDB: d6fu3b3
        automated match to d1zzha1
        complexed with ca, hec
      2. 2305128Domain d6fu3a2: 6fu3 A:171-329 [365814]
        Other proteins in same PDB: d6fu3b3
        automated match to d1zzha2
        complexed with ca, hec
      3. 2305129Domain d6fu3b1: 6fu3 B:3-170 [365870]
        Other proteins in same PDB: d6fu3b3
        automated match to d1zzha1
        complexed with ca, hec
      4. 2305130Domain d6fu3b2: 6fu3 B:171-325 [365871]
        Other proteins in same PDB: d6fu3b3
        automated match to d1zzha2
        complexed with ca, hec
    2. Domains for 6qkn:
      1. 2305131Domain d6qkna1: 6qkn A:1-170 [381048]
        automated match to d1zzha1
        complexed with azi, ca, hec
      2. 2305132Domain d6qkna2: 6qkn A:171-329 [381049]
        automated match to d1zzha2
        complexed with azi, ca, hec
      3. 2305133Domain d6qknb1: 6qkn B:3-170 [381122]
        automated match to d1zzha1
        complexed with azi, ca, hec
      4. 2305134Domain d6qknb2: 6qkn B:171-325 [381123]
        automated match to d1zzha2
        complexed with azi, ca, hec
  13. 2305135Nitrosomonas europaea [TaxId:915] [224844] (2 PDB entries)
    1. Domains for 3zox:
      1. 2305140Domain d3zoxa_: 3zox A: [218383]
        automated match to d1ynrb_
        complexed with hec; mutant
      2. 2305141Domain d3zoxb_: 3zox B: [218384]
        automated match to d1ynrb_
        complexed with hec; mutant
      3. 2305142Domain d3zoxc_: 3zox C: [218385]
        automated match to d1ynrb_
        complexed with hec; mutant
      4. 2305143Domain d3zoxd_: 3zox D: [218386]
        automated match to d1ynrb_
        complexed with hec; mutant
    2. Domains for 3zoy:
      1. 2305136Domain d3zoya_: 3zoy A: [218387]
        automated match to d1ynrb_
        complexed with hec; mutant
      2. 2305137Domain d3zoyb_: 3zoy B: [218388]
        automated match to d1ynrb_
        complexed with hec; mutant
      3. 2305138Domain d3zoyc_: 3zoy C: [218389]
        automated match to d1ynrb_
        complexed with hec; mutant
      4. 2305139Domain d3zoyd_: 3zoy D: [218390]
        automated match to d1ynrb_
        complexed with hec; mutant
  14. 2305144Paracoccus denitrificans [TaxId:266] [225029] (1 PDB entry)
  15. 2305153Paracoccus pantotrophus [TaxId:82367] [187503] (3 PDB entries)
    1. Domains for 2c1d:
      1. 2305158Domain d2c1db_: 2c1d B: [163223]
        automated match to d1h31b_
        complexed with hec, zn
      2. 2305159Domain d2c1dd_: 2c1d D: [163224]
        automated match to d1h31b_
        complexed with hec, zn
      3. 2305160Domain d2c1df_: 2c1d F: [163225]
        automated match to d1h31b_
        complexed with hec, zn
      4. 2305161Domain d2c1dh_: 2c1d H: [163226]
        automated match to d1h31b_
        complexed with hec, zn
    2. Domains for 2c1u:
      1. 2305162Domain d2c1ua1: 2c1u A:4-180 [203691]
        automated match to d1nmla1
        complexed with ca, hec
      2. 2305163Domain d2c1ua2: 2c1u A:181-338 [203692]
        automated match to d1nmla2
        complexed with ca, hec
      3. 2305164Domain d2c1ub1: 2c1u B:4-180 [203693]
        automated match to d1nmla1
        complexed with ca, hec
      4. 2305165Domain d2c1ub2: 2c1u B:181-338 [203694]
        automated match to d1nmla2
        complexed with ca, hec
      5. 2305166Domain d2c1uc1: 2c1u C:4-180 [203695]
        automated match to d1nmla1
        complexed with ca, hec
      6. 2305167Domain d2c1uc2: 2c1u C:181-338 [203696]
        automated match to d1nmla2
        complexed with ca, hec
      7. 2305168Domain d2c1ud1: 2c1u D:4-180 [203697]
        automated match to d1nmla1
        complexed with ca, hec
      8. 2305169Domain d2c1ud2: 2c1u D:181-338 [203698]
        automated match to d1nmla2
        complexed with ca, hec
    3. Domains for 2c1v:
      1. 2305154Domain d2c1va1: 2c1v A:4-180 [203699]
        automated match to d1nmla1
        complexed with ca, edo, hec
      2. 2305155Domain d2c1va2: 2c1v A:181-338 [203700]
        automated match to d1nmla2
        complexed with ca, edo, hec
      3. 2305156Domain d2c1vb1: 2c1v B:4-180 [203701]
        automated match to d1nmla1
        complexed with ca, edo, hec
      4. 2305157Domain d2c1vb2: 2c1v B:181-338 [203702]
        automated match to d1nmla2
        complexed with ca, edo, hec
  16. 2305170Rhodobacter capsulatus [TaxId:1061] [225039] (1 PDB entry)
  17. 2305179Rhodothermus marinus [TaxId:29549] [193856] (1 PDB entry)
  18. 2305181Shewanella oneidensis [TaxId:70863] [226180] (1 PDB entry)
  19. 2305190Shewanella violacea [TaxId:60217] [324148] (2 PDB entries)
    1. Domains for 5b6q:
      1. 2305193Domain d5b6qa_: 5b6q A: [324305]
        automated match to d1cc5a_
        complexed with hem, imd
      2. 2305194Domain d5b6qb_: 5b6q B: [324149]
        automated match to d1cc5a_
        complexed with hem, imd
    2. Domains for 6k7c:
      1. 2305191Domain d6k7ca_: 6k7c A: [373599]
        automated match to d5b6qa_
        complexed with hec, no3
      2. 2305192Domain d6k7cc_: 6k7c C: [373598]
        automated match to d5b6qa_
        complexed with hec, no3
  20. 2305195Sideroxydans lithotrophicus [TaxId:580332] [271583] (1 PDB entry)
  21. 2305197Synechococcus sp. [TaxId:32049] [196764] (2 PDB entries)
    1. Domain for 4eie:
    2. Domain for 4eif:
  22. 2305200Synechococcus sp. [TaxId:84588] [237969] (1 PDB entry)
  23. 2305202Thale cress (Arabidopsis thaliana) [TaxId:3702] [187367] (4 PDB entries)
    1. Domain for 2ce0:
    2. Domain for 2ce1:
    3. Domains for 2dge:
      1. 2305205Domain d2dgea_: 2dge A: [163627]
        automated match to d1c6sa_
        complexed with hem, zn
      2. 2305206Domain d2dgeb_: 2dge B: [163628]
        automated match to d1c6sa_
        complexed with hem, zn
      3. 2305207Domain d2dgec_: 2dge C: [163629]
        automated match to d1c6sa_
        complexed with hem, zn
      4. 2305208Domain d2dged_: 2dge D: [163630]
        automated match to d1c6sa_
        complexed with hem, zn
    4. Domain for 2v07:
  24. 2305210Thermosynechococcus elongatus [TaxId:197221] [327705] (4 PDB entries)
    1. Domain for 5kaf:
    2. Domain for 5kai:
    3. Domain for 5mx2:
    4. Domain for 5tis:
  25. 2305215Thermosynechococcus vulcanus [TaxId:32053] [329405] (6 PDB entries)
    1. Domain for 5b5e:
    2. Domain for 5b66:
    3. Domain for 5gth:
    4. Domain for 5v2c:
    5. Domain for 5ws5:
    6. Domain for 5ws6:

More info for Protein automated matches from a.3.1.0: automated matches

Timeline for Protein automated matches from a.3.1.0: automated matches: