Lineage for Protein: automated matches

  1. Root: SCOPe 2.02
  2. 1143363Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 1187611Fold c.108: HAD-like [56783] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456
  4. 1187612Superfamily c.108.1: HAD-like [56784] (26 families) (S)
    usually contains an insertion (sub)domain after strand 1
  5. 1188163Family c.108.1.0: automated matches [191369] (1 protein)
    not a true family
  6. 1188164Protein automated matches [190447] (25 species)
    not a true protein

Species:

  1. 1188165Aquifex aeolicus [TaxId:224324] [188261] (1 PDB entry)
  2. 1188168Aquifex aeolicus [TaxId:63363] [187934] (1 PDB entry)
  3. 1188170Archaeoglobus fulgidus [TaxId:2234] [189636] (1 PDB entry)
  4. 1188175Bacillus subtilis [TaxId:1423] [188499] (4 PDB entries)
    1. Domain for 3dnp:
    2. Domain for 3ed5:
    3. Domains for 3i76:
      1. 1188179Domain d3i76a_: 3i76 A: [178123]
        automated match to d2gfha1
        complexed with cl, gol, mg
      2. 1188180Domain d3i76b_: 3i76 B: [178124]
        automated match to d2gfha1
        complexed with cl, gol, mg
      3. 1188181Domain d3i76c_: 3i76 C: [178125]
        automated match to d2gfha1
        complexed with cl, gol, mg
    4. Domain for 3pdw:
  5. 1188182Bacteroides thetaiotaomicron [TaxId:818] [189385] (4 PDB entries)
    1. Domain for 3niw:
    2. Domain for 3qnm:
    3. Domain for 3r4c:
    4. Domain for 4dwo:
  6. 1188187Clostridium acetobutylicum [TaxId:1488] [189302] (1 PDB entry)
  7. 1188190Clostridium difficile [TaxId:272563] [188776] (1 PDB entry)
  8. 1188193Cytophaga hutchinsonii [TaxId:985] [187831] (1 PDB entry)
  9. 1188198Geobacillus kaustophilus [TaxId:1462] [188567] (1 PDB entry)
  10. 1188203Geobacillus kaustophilus [TaxId:235909] [188431] (1 PDB entry)
  11. 1188206Helicobacter pylori [TaxId:210] [189290] (1 PDB entry)
  12. 1188211Human (Homo sapiens) [TaxId:9606] [188990] (2 PDB entries)
    1. Domains for 2x4d:
      1. 1188212Domain d2x4da_: 2x4d A: [169851]
        automated match to d1pw5a_
        complexed with epe, gol, mg, pop
      2. 1188213Domain d2x4db_: 2x4d B: [169852]
        automated match to d1pw5a_
        complexed with epe, gol, mg, pop
    2. Domains for 3hlt:
      1. 1188214Domain d3hlta_: 3hlt A: [177680]
        automated match to d1yv9a1
        complexed with cl, na, so4
      2. 1188215Domain d3hltc_: 3hlt C: [177681]
        automated match to d1yv9a1
        complexed with cl, na, so4
  13. 1188216Lactobacillus brevis [TaxId:387344] [189330] (1 PDB entry)
  14. 1188221Lactobacillus delbrueckii [TaxId:1584] [187809] (1 PDB entry)
  15. 1188224Legionella pneumophila [TaxId:272624] [189400] (1 PDB entry)
  16. 1188226Mus musculus [TaxId:10090] [193863] (1 PDB entry)
  17. 1188228Oleispira antarctica [TaxId:188908] [189026] (1 PDB entry)
  18. 1188231Pseudomonas syringae [TaxId:264730] [196431] (1 PDB entry)
  19. 1188233Pseudomonas syringae [TaxId:323] [189694] (1 PDB entry)
  20. 1188237Pyrococcus horikoshii [TaxId:70601] [187354] (2 PDB entries)
    1. Domains for 1zjj:
      1. 1188239Domain d1zjja_: 1zjj A: [162492]
        automated match to d1vjra_
        complexed with mg
      2. 1188240Domain d1zjjb_: 1zjj B: [162493]
        automated match to d1vjra_
        complexed with mg
    2. Domain for 2hoq:
  21. 1188241Ralstonia solanacearum [TaxId:305] [194318] (1 PDB entry)
  22. 1188243Staphylococcus epidermidis [TaxId:176280] [193618] (1 PDB entry)
  23. 1188245Sulfolobus tokodaii [TaxId:111955] [188720] (2 PDB entries)
    1. Domains for 2w11:
      1. 1188248Domain d2w11a_: 2w11 A: [168994]
        automated match to d1juda_
        complexed with 2op
      2. 1188249Domain d2w11b_: 2w11 B: [168995]
        automated match to d1juda_
        complexed with 2op
    2. Domains for 2w43:
      1. 1188246Domain d2w43a_: 2w43 A: [169049]
        automated match to d1juda_
        complexed with mes, po4
      2. 1188247Domain d2w43b_: 2w43 B: [169050]
        automated match to d1juda_
        complexed with mes, po4
  24. 1188250Trypanosome (Trypanosoma brucei) [TaxId:5691] [188800] (1 PDB entry)
  25. 1188253Vibrio cholerae [TaxId:666] [193720] (1 PDB entry)

More info for Protein automated matches from c.108.1.0: automated matches

Timeline for Protein automated matches from c.108.1.0: automated matches: