Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1815291Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1852416Fold c.47: Thioredoxin fold [52832] (2 superfamilies)
    core: 3 layers, a/b/a; mixed beta-sheet of 4 strands, order 4312; strand 3 is antiparallel to the rest
  4. 1852417Superfamily c.47.1: Thioredoxin-like [52833] (24 families) (S)
  5. 1852418Family c.47.1.1: Thioltransferase [52834] (16 proteins)
  6. 1852707Protein automated matches [190442] (13 species)
    not a true protein

Species:

  1. 1852708Acetobacter aceti [TaxId:435] [187839] (1 PDB entry)
  2. 1852710Artificial gene [TaxId:32630] [189470] (1 PDB entry)
  3. 1852712Bacillus subtilis [TaxId:1423] [255197] (3 PDB entries)
    1. Domain for 2gzy:
    2. Domain for 2gzz:
    3. Domain for 2ipa:
  4. 1852716Escherichia coli K-12 [TaxId:83333] [188760] (4 PDB entries)
    1. Domains for 3dyr:
      1. 1852718Domain d3dyra_: 3dyr A: [174393]
        automated match to d1xoaa_
        mutant
      2. 1852719Domain d3dyrb_: 3dyr B: [174394]
        automated match to d1xoaa_
        mutant
    2. Domain for 4hua:
    3. Domain for 4ip1:
    4. Domain for 4ip6:
  5. 1852722Escherichia coli [TaxId:562] [187670] (1 PDB entry)
  6. 1852727Escherichia coli [TaxId:83334] [279735] (1 PDB entry)
  7. 1852730Hordeum vulgare [TaxId:112509] [188425] (2 PDB entries)
    1. Domains for 2vm1:
      1. 1852731Domain d2vm1a_: 2vm1 A: [168694]
        automated match to d1ti3a_
        complexed with so4
      2. 1852732Domain d2vm1b_: 2vm1 B: [168695]
        automated match to d1ti3a_
        complexed with so4
      3. 1852733Domain d2vm1c_: 2vm1 C: [168696]
        automated match to d1ti3a_
        complexed with so4
      4. 1852734Domain d2vm1d_: 2vm1 D: [168697]
        automated match to d1ti3a_
        complexed with so4
    2. Domains for 2vm2:
      1. 1852735Domain d2vm2a_: 2vm2 A: [168698]
        automated match to d1ti3a_
      2. 1852736Domain d2vm2b_: 2vm2 B: [168699]
        automated match to d1ti3a_
      3. 1852737Domain d2vm2c_: 2vm2 C: [168700]
        automated match to d1ti3a_
      4. 1852738Domain d2vm2d_: 2vm2 D: [168701]
        automated match to d1ti3a_
  8. 1852739Human (Homo sapiens) [TaxId:9606] [189547] (7 PDB entries)
    1. Domain for 2k8v:
    2. Domains for 2yan:
      1. 1852741Domain d2yana_: 2yan A: [170708]
        automated match to d1wika_
        complexed with cl, edo, fe, gsh, so4
      2. 1852742Domain d2yanb_: 2yan B: [170709]
        automated match to d1wika_
        complexed with cl, edo, fe, gsh, so4
    3. Domain for 3kd0:
    4. Domains for 3qfa:
      1. 1852746Domain d3qfac_: 3qfa C: [200327]
        automated match to d3qfbd_
        complexed with fad, gol
      2. 1852747Domain d3qfad_: 3qfa D: [196294]
        automated match to d3e3ea_
        complexed with fad, gol
    5. Domains for 3qfb:
      1. 1852748Domain d3qfbc_: 3qfb C: [200328]
        automated match to d3qfbd_
        complexed with fad, gol
      2. 1852749Domain d3qfbd_: 3qfb D: [196293]
        automated match to d3e3ea_
        complexed with fad, gol
    6. Domains for 3zyw:
      1. 1852743Domain d3zywa_: 3zyw A: [195905]
        automated match to d2yana_
        complexed with edo
      2. 1852744Domain d3zywb_: 3zyw B: [195904]
        automated match to d2yana_
        complexed with edo
    7. Domain for 4rqr:
  9. 1852751Mycobacterium tuberculosis [TaxId:1773] [226696] (2 PDB entries)
    1. Domain for 4hs1:
    2. Domain for 4k8m:
  10. 1852754Mycobacterium tuberculosis [TaxId:83332] [197006] (1 PDB entry)
  11. 1852756Pacific white shrimp (Litopenaeus vannamei) [TaxId:6689] [197071] (7 PDB entries)
    1. Domains for 3zzx:
      1. 1852761Domain d3zzxa_: 3zzx A: [218619]
        automated match to d4aj7a_
        complexed with act, dtu, gol, so4
      2. 1852762Domain d3zzxb_: 3zzx B: [218620]
        automated match to d4aj7a_
        complexed with act, dtu, gol, so4
    2. Domains for 4aj6:
      1. 1852765Domain d4aj6a_: 4aj6 A: [197220]
        automated match to d1xwaa_
        complexed with act, dtt, gol
      2. 1852766Domain d4aj6b_: 4aj6 B: [197217]
        automated match to d1xwaa_
        complexed with act, dtt, gol
    3. Domains for 4aj7:
      1. 1852763Domain d4aj7a_: 4aj7 A: [197072]
        automated match to d1xwaa_
        complexed with act, gol, so4
      2. 1852764Domain d4aj7b_: 4aj7 B: [197218]
        automated match to d1xwaa_
        complexed with act, gol, so4
    4. Domains for 4aj8:
      1. 1852757Domain d4aj8a_: 4aj8 A: [197219]
        automated match to d1xwaa_
        complexed with act, gol, so4
      2. 1852758Domain d4aj8b_: 4aj8 B: [197216]
        automated match to d1xwaa_
        complexed with act, gol, so4
    5. Domains for 4v2l:
      1. 1852759Domain d4v2la_: 4v2l A: [269007]
        automated match to d4aj8a_
        complexed with act, gol, so4
      2. 1852760Domain d4v2lb_: 4v2l B: [269008]
        automated match to d4aj8a_
        complexed with act, gol, so4
    6. Domains for 4v2m:
      1. 1852767Domain d4v2ma_: 4v2m A: [268999]
        automated match to d4aj8a_
        complexed with act, gol, so4
      2. 1852768Domain d4v2mb_: 4v2m B: [269000]
        automated match to d4aj8a_
        complexed with act, gol, so4
    7. Domains for 4v2n:
      1. 1852769Domain d4v2na_: 4v2n A: [268997]
        automated match to d4aj8a_
        complexed with act, so4
      2. 1852770Domain d4v2nb_: 4v2n B: [269001]
        automated match to d4aj8a_
        complexed with act, so4
  12. 1852771Rice (Oryza sativa) [TaxId:4530] [254945] (1 PDB entry)
  13. 1852773Spinach (Spinacia oleracea) [TaxId:3562] [187345] (2 PDB entries)
    1. Domain for 2pu9:
    2. Domains for 2puk:
      1. 1852775Domain d2pukc_: 2puk C: [238816]
        Other proteins in same PDB: d2puka_, d2pukb_, d2puke_, d2pukf_
        automated match to d1dbya_
        complexed with sf4
      2. 1852776Domain d2pukg_: 2puk G: [238817]
        Other proteins in same PDB: d2puka_, d2pukb_, d2puke_, d2pukf_
        automated match to d1dbya_
        complexed with sf4

More info for Protein automated matches from c.47.1.1: Thioltransferase

Timeline for Protein automated matches from c.47.1.1: Thioltransferase: