Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2116932Fold c.47: Thioredoxin fold [52832] (2 superfamilies)
    core: 3 layers, a/b/a; mixed beta-sheet of 4 strands, order 4312; strand 3 is antiparallel to the rest
  4. 2116933Superfamily c.47.1: Thioredoxin-like [52833] (24 families) (S)
  5. 2116934Family c.47.1.1: Thioltransferase [52834] (16 protein domains)
  6. 2117228Protein automated matches [190442] (13 species)
    not a true protein

Species:

  1. 2117229Acetobacter aceti [TaxId:435] [187839] (1 PDB entry)
  2. 2117231Artificial gene [TaxId:32630] [189470] (1 PDB entry)
  3. 2117233Bacillus subtilis [TaxId:1423] [255197] (3 PDB entries)
    1. Domain for 2gzy:
    2. Domain for 2gzz:
    3. Domain for 2ipa:
  4. 2117237Escherichia coli K-12 [TaxId:83333] [188760] (3 PDB entries)
    1. Domain for 4hua:
    2. Domain for 4ip1:
    3. Domain for 4ip6:
  5. 2117241Escherichia coli [TaxId:562] [187670] (3 PDB entries)
    1. Domains for 2eir:
      1. 2117242Domain d2eira_: 2eir A: [164053]
        automated match to d1xoaa_
        complexed with cu
      2. 2117243Domain d2eirb_: 2eir B: [164054]
        automated match to d1xoaa_
        complexed with cu
      3. 2117244Domain d2eirc_: 2eir C: [164055]
        automated match to d1xoaa_
        complexed with cu
      4. 2117245Domain d2eird_: 2eir D: [164056]
        automated match to d1xoaa_
        complexed with cu
    2. Domains for 5hr0:
      1. 2286687Domain d5hr0a_: 5hr0 A: [329988]
        automated match to d2trxa_
        complexed with cu; mutant
      2. 2286738Domain d5hr0b_: 5hr0 B: [330039]
        automated match to d2trxa_
        complexed with cu; mutant
    3. Domains for 5hr3:
      1. 2286686Domain d5hr3b_: 5hr3 B: [329987]
        automated match to d2trxa_
        complexed with cu, eoh, so4; mutant
      2. 2286755Domain d5hr3a_: 5hr3 A: [330056]
        automated match to d2trxa_
        complexed with cu, eoh, so4; mutant
  6. 2117246Escherichia coli [TaxId:83334] [279735] (2 PDB entries)
    1. Domains for 5e4w:
      1. 2117247Domain d5e4wa1: 5e4w A:12-118 [279737]
        Other proteins in same PDB: d5e4wa2, d5e4wb2
        automated match to d2trxa_
        complexed with ca, gol
      2. 2117248Domain d5e4wb1: 5e4w B:12-118 [279736]
        Other proteins in same PDB: d5e4wa2, d5e4wb2
        automated match to d2trxa_
        complexed with ca, gol
    2. Domains for 5hr1:
      1. 2286696Domain d5hr1c_: 5hr1 C: [329997]
        automated match to d2trxa_
        complexed with cu; mutant
      2. 2286698Domain d5hr1d_: 5hr1 D: [329999]
        automated match to d2trxa_
        complexed with cu; mutant
      3. 2286702Domain d5hr1e_: 5hr1 E: [330003]
        automated match to d2trxa_
        complexed with cu; mutant
      4. 2286743Domain d5hr1a_: 5hr1 A: [330044]
        automated match to d2trxa_
        complexed with cu; mutant
      5. 2286757Domain d5hr1f_: 5hr1 F: [330058]
        automated match to d2trxa_
        complexed with cu; mutant
      6. 2286774Domain d5hr1b_: 5hr1 B: [330075]
        automated match to d2trxa_
        complexed with cu; mutant
  7. 2117249Hordeum vulgare [TaxId:112509] [188425] (2 PDB entries)
    1. Domains for 2vm1:
      1. 2117250Domain d2vm1a_: 2vm1 A: [168694]
        automated match to d1ti3a_
        complexed with so4
      2. 2117251Domain d2vm1b_: 2vm1 B: [168695]
        automated match to d1ti3a_
        complexed with so4
      3. 2117252Domain d2vm1c_: 2vm1 C: [168696]
        automated match to d1ti3a_
        complexed with so4
      4. 2117253Domain d2vm1d_: 2vm1 D: [168697]
        automated match to d1ti3a_
        complexed with so4
    2. Domains for 2vm2:
      1. 2117254Domain d2vm2a_: 2vm2 A: [168698]
        automated match to d1ti3a_
      2. 2117255Domain d2vm2b_: 2vm2 B: [168699]
        automated match to d1ti3a_
      3. 2117256Domain d2vm2c_: 2vm2 C: [168700]
        automated match to d1ti3a_
      4. 2117257Domain d2vm2d_: 2vm2 D: [168701]
        automated match to d1ti3a_
  8. 2117258Human (Homo sapiens) [TaxId:9606] [189547] (7 PDB entries)
    1. Domain for 2k8v:
    2. Domains for 2yan:
      1. 2117260Domain d2yana1: 2yan A:232-334 [170708]
        Other proteins in same PDB: d2yana2, d2yanb2
        automated match to d1wika_
        complexed with cl, edo, fe, gsh, so4
      2. 2117261Domain d2yanb1: 2yan B:232-334 [170709]
        Other proteins in same PDB: d2yana2, d2yanb2
        automated match to d1wika_
        complexed with cl, edo, fe, gsh, so4
    3. Domain for 3kd0:
    4. Domains for 3qfa:
      1. 2117265Domain d3qfac1: 3qfa C:2-105 [200327]
        Other proteins in same PDB: d3qfac2, d3qfad2
        automated match to d3qfbd_
        complexed with fad, gol
      2. 2117266Domain d3qfad1: 3qfa D:2-105 [196294]
        Other proteins in same PDB: d3qfac2, d3qfad2
        automated match to d3e3ea_
        complexed with fad, gol
    5. Domains for 3qfb:
      1. 2117267Domain d3qfbc1: 3qfb C:2-105 [200328]
        Other proteins in same PDB: d3qfbc2, d3qfbd2
        automated match to d3qfbd_
        complexed with fad, gol
      2. 2117268Domain d3qfbd1: 3qfb D:2-105 [196293]
        Other proteins in same PDB: d3qfbc2, d3qfbd2
        automated match to d3e3ea_
        complexed with fad, gol
    6. Domains for 3zyw:
      1. 2117262Domain d3zywa1: 3zyw A:132-232 [195905]
        Other proteins in same PDB: d3zywa2, d3zywb2, d3zywb3
        automated match to d2yana_
        complexed with edo
      2. 2117263Domain d3zywb1: 3zyw B:130-232 [195904]
        Other proteins in same PDB: d3zywa2, d3zywb2, d3zywb3
        automated match to d2yana_
        complexed with edo
    7. Domain for 4rqr:
  9. 2117270Mycobacterium tuberculosis [TaxId:1773] [226696] (2 PDB entries)
    1. Domain for 4hs1:
    2. Domain for 4k8m:
  10. 2117273Mycobacterium tuberculosis [TaxId:83332] [197006] (1 PDB entry)
  11. 2117275Pacific white shrimp (Litopenaeus vannamei) [TaxId:6689] [197071] (10 PDB entries)
    1. Domains for 3zzx:
      1. 2117280Domain d3zzxa_: 3zzx A: [218619]
        automated match to d4aj7a_
        complexed with act, dtu, gol, so4
      2. 2117281Domain d3zzxb_: 3zzx B: [218620]
        automated match to d4aj7a_
        complexed with act, dtu, gol, so4
    2. Domains for 4aj6:
      1. 2117284Domain d4aj6a_: 4aj6 A: [197220]
        automated match to d1xwaa_
        complexed with act, dtt, gol
      2. 2117285Domain d4aj6b_: 4aj6 B: [197217]
        automated match to d1xwaa_
        complexed with act, dtt, gol
    3. Domains for 4aj7:
      1. 2117282Domain d4aj7a_: 4aj7 A: [197072]
        automated match to d1xwaa_
        complexed with act, gol, so4
      2. 2117283Domain d4aj7b_: 4aj7 B: [197218]
        automated match to d1xwaa_
        complexed with act, gol, so4
    4. Domains for 4aj8:
      1. 2117276Domain d4aj8a_: 4aj8 A: [197219]
        automated match to d1xwaa_
        complexed with act, gol, so4
      2. 2117277Domain d4aj8b_: 4aj8 B: [197216]
        automated match to d1xwaa_
        complexed with act, gol, so4
    5. Domains for 4v2l:
      1. 2117278Domain d4v2la_: 4v2l A: [269007]
        automated match to d4aj8a_
        complexed with act, gol, so4
      2. 2117279Domain d4v2lb_: 4v2l B: [269008]
        automated match to d4aj8a_
        complexed with act, gol, so4
    6. Domains for 4v2m:
      1. 2117286Domain d4v2ma_: 4v2m A: [268999]
        automated match to d4aj8a_
        complexed with act, gol, so4
      2. 2117287Domain d4v2mb_: 4v2m B: [269000]
        automated match to d4aj8a_
        complexed with act, gol, so4
    7. Domains for 4v2n:
      1. 2117288Domain d4v2na_: 4v2n A: [268997]
        automated match to d4aj8a_
        complexed with act, so4
      2. 2117289Domain d4v2nb_: 4v2n B: [269001]
        automated match to d4aj8a_
        complexed with act, so4
    8. Domains for 5g2z:
      1. 2287674Domain d5g2za_: 5g2z A: [330975]
        automated match to d4aj8a_
        mutant
      2. 2287736Domain d5g2zb_: 5g2z B: [331037]
        automated match to d4aj8a_
        mutant
    9. Domains for 5g30:
      1. 2289584Domain d5g30b_: 5g30 B: [332885]
        automated match to d4aj8a_
        complexed with act, peg; mutant
      2. 2289585Domain d5g30c_: 5g30 C: [332886]
        automated match to d4aj8a_
        complexed with act, peg; mutant
      3. 2289586Domain d5g30d_: 5g30 D: [332887]
        automated match to d4aj8a_
        complexed with act, peg; mutant
      4. 2289589Domain d5g30a_: 5g30 A: [332890]
        automated match to d4aj8a_
        complexed with act, peg; mutant
    10. Domain for 5g31:
  12. 2117290Rice (Oryza sativa) [TaxId:4530] [254945] (1 PDB entry)
  13. 2117292Spinach (Spinacia oleracea) [TaxId:3562] [187345] (2 PDB entries)
    1. Domain for 2pu9:
    2. Domains for 2puk:
      1. 2117294Domain d2pukc_: 2puk C: [238816]
        Other proteins in same PDB: d2puka_, d2pukb_, d2puke2, d2puke3, d2pukf_
        automated match to d1dbya_
        complexed with sf4
      2. 2117295Domain d2pukg_: 2puk G: [238817]
        Other proteins in same PDB: d2puka_, d2pukb_, d2puke2, d2puke3, d2pukf_
        automated match to d1dbya_
        complexed with sf4

More info for Protein automated matches from c.47.1.1: Thioltransferase

Timeline for Protein automated matches from c.47.1.1: Thioltransferase: