Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2387119Fold b.45: Split barrel-like [50474] (3 superfamilies)
    barrel; n=6, S=10; greek-key
  4. 2387120Superfamily b.45.1: FMN-binding split barrel [50475] (5 families) (S)
    related to the ferredoxin reductase-like FAD-binding domain
  5. 2387342Family b.45.1.0: automated matches [191365] (1 protein)
    not a true family
  6. 2387343Protein automated matches [190439] (20 species)
    not a true protein

Species:

  1. 2387344Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [188602] (1 PDB entry)
  2. 2387346Arthrobacter sp. [TaxId:290399] [187341] (1 PDB entry)
  3. 2387348Bacillus cereus [TaxId:226900] [188294] (1 PDB entry)
  4. 2387351Brucella melitensis [TaxId:224914] [236401] (1 PDB entry)
  5. 2387353Brucella melitensis [TaxId:29459] [188364] (1 PDB entry)
  6. 2387358Brucella melitensis [TaxId:359391] [189754] (2 PDB entries)
    1. Domain for 3u0i:
    2. Domain for 3u5w:
  7. 2387361Burkholderia cepacia [TaxId:292] [225782] (3 PDB entries)
    1. Domains for 3k86:
      1. 2387362Domain d3k86a_: 3k86 A: [212201]
        automated match to d3cb0c_
      2. 2387363Domain d3k86b_: 3k86 B: [212202]
        automated match to d3cb0c_
    2. Domains for 3k87:
      1. 2387364Domain d3k87a_: 3k87 A: [212203]
        automated match to d3cb0c_
        complexed with fad
      2. 2387365Domain d3k87b_: 3k87 B: [212204]
        automated match to d3cb0c_
        complexed with fad
    3. Domains for 3k88:
      1. 2387366Domain d3k88a_: 3k88 A: [212205]
        automated match to d3cb0c_
        complexed with fad, nad
      2. 2387367Domain d3k88b_: 3k88 B: [212206]
        automated match to d3cb0c_
        complexed with fad, nad
  8. 2387368Haemophilus somnus [TaxId:205914] [188012] (1 PDB entry)
  9. 2387370Mycobacterium avium [TaxId:243243] [271156] (1 PDB entry)
  10. 2387373Mycobacterium goodii [TaxId:134601] [189785] (1 PDB entry)
  11. 2387376Mycobacterium smegmatis [TaxId:246196] [278309] (2 PDB entries)
    1. Domains for 4ybn:
      1. 2387377Domain d4ybna_: 4ybn A: [278464]
        automated match to d2fura1
        complexed with act, fad, hem, ni, so4
      2. 2387378Domain d4ybnb_: 4ybn B: [278463]
        automated match to d2fura1
        complexed with act, fad, hem, ni, so4
    2. Domains for 5bnc:
      1. 2387379Domain d5bnca_: 5bnc A: [278311]
        automated match to d2arzb_
        complexed with epe, mg, ni, so4
      2. 2387380Domain d5bncb_: 5bnc B: [278312]
        automated match to d2arzb_
        complexed with epe, mg, ni, so4
  12. 2387381Mycobacterium thermoresistibile [TaxId:1078020] [267858] (1 PDB entry)
  13. 2387386Rickettsia felis [TaxId:315456] [226703] (1 PDB entry)
  14. 2387391Streptomyces globisporus [TaxId:1908] [256294] (2 PDB entries)
    1. Domains for 4hx6:
      1. 2387394Domain d4hx6a1: 4hx6 A:1-175 [262709]
        Other proteins in same PDB: d4hx6a2, d4hx6c2, d4hx6d2, d4hx6f2
        automated match to d4r82a_
        complexed with act, so4
      2. 2387395Domain d4hx6b_: 4hx6 B: [252535]
        Other proteins in same PDB: d4hx6a2, d4hx6c2, d4hx6d2, d4hx6f2
        automated match to d3pfta_
        complexed with act, so4
      3. 2387396Domain d4hx6c1: 4hx6 C:1-178 [262710]
        Other proteins in same PDB: d4hx6a2, d4hx6c2, d4hx6d2, d4hx6f2
        automated match to d4r82a_
        complexed with act, so4
      4. 2387397Domain d4hx6d1: 4hx6 D:1-175 [262711]
        Other proteins in same PDB: d4hx6a2, d4hx6c2, d4hx6d2, d4hx6f2
        automated match to d4r82a_
        complexed with act, so4
      5. 2387398Domain d4hx6e_: 4hx6 E: [262712]
        Other proteins in same PDB: d4hx6a2, d4hx6c2, d4hx6d2, d4hx6f2
        automated match to d4r82a_
        complexed with act, so4
      6. 2387399Domain d4hx6f1: 4hx6 F:1-175 [262713]
        Other proteins in same PDB: d4hx6a2, d4hx6c2, d4hx6d2, d4hx6f2
        automated match to d4r82a_
        complexed with act, so4
      7. 2387400Domain d4hx6g_: 4hx6 G: [252536]
        Other proteins in same PDB: d4hx6a2, d4hx6c2, d4hx6d2, d4hx6f2
        automated match to d3pfta_
        complexed with act, so4
      8. 2387401Domain d4hx6h_: 4hx6 H: [252537]
        Other proteins in same PDB: d4hx6a2, d4hx6c2, d4hx6d2, d4hx6f2
        automated match to d3pfta_
        complexed with act, so4
    2. Domains for 4r82:
      1. 2387392Domain d4r82a_: 4r82 A: [260009]
        automated match to d4hx6g_
        complexed with act, ca, cl, fad, mg, nad
      2. 2387393Domain d4r82b_: 4r82 B: [263827]
        automated match to d4r82a_
        complexed with act, ca, cl, fad, mg, nad
  15. 2387402Sulfolobus tokodaii [TaxId:273063] [225074] (3 PDB entries)
    1. Domain for 2d36:
    2. Domain for 2d37:
    3. Domain for 2d38:
  16. 2387406Thermus thermophilus HB8 [TaxId:300852] [225396] (3 PDB entries)
    1. Domains for 2ecr:
      1. 2387409Domain d2ecra_: 2ecr A: [204108]
        automated match to d3cb0a_
      2. 2387410Domain d2ecrb_: 2ecr B: [204109]
        automated match to d3cb0a_
    2. Domains for 2ecu:
      1. 2387407Domain d2ecua_: 2ecu A: [204110]
        automated match to d3cb0a_
        complexed with 12p, 1pg
      2. 2387408Domain d2ecub_: 2ecu B: [204111]
        automated match to d3cb0a_
        complexed with 12p, 1pg
    3. Domains for 2ed4:
      1. 2387411Domain d2ed4a_: 2ed4 A: [204112]
        automated match to d3cb0a_
        complexed with fad, nad
      2. 2387412Domain d2ed4b_: 2ed4 B: [204113]
        automated match to d3cb0a_
        complexed with fad, nad
  17. 2387413Uncultured bacterium [TaxId:77133] [318898] (1 PDB entry)
  18. 2387422Vibrio cholerae [TaxId:345073] [193560] (1 PDB entry)
  19. 2387427Xanthomonas axonopodis [TaxId:92829] [256113] (2 PDB entries)
    1. Domains for 3u34:
      1. 2387432Domain d3u34a_: 3u34 A: [250075]
        automated match to d3dmbb_
        complexed with pge
      2. 2387433Domain d3u34b_: 3u34 B: [250076]
        automated match to d3dmbb_
        complexed with pge
      3. 2387434Domain d3u34c_: 3u34 C: [250077]
        automated match to d3dmbb_
        complexed with pge
      4. 2387435Domain d3u34d_: 3u34 D: [250078]
        automated match to d3dmbb_
        complexed with pge
    2. Domains for 3u35:
      1. 2387428Domain d3u35a_: 3u35 A: [250079]
        automated match to d3dmbb_
        complexed with pge
      2. 2387429Domain d3u35b_: 3u35 B: [250080]
        automated match to d3dmbb_
        complexed with pge
      3. 2387430Domain d3u35c_: 3u35 C: [250081]
        automated match to d3dmbb_
        complexed with pge
      4. 2387431Domain d3u35d_: 3u35 D: [250082]
        automated match to d3dmbb_
        complexed with pge
  20. 2387436Xanthomonas campestris [TaxId:340] [225517] (1 PDB entry)

More info for Protein automated matches from b.45.1.0: automated matches

Timeline for Protein automated matches from b.45.1.0: automated matches: