Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1755445Class b: All beta proteins [48724] (176 folds)
  3. 1793083Fold b.47: Trypsin-like serine proteases [50493] (1 superfamily)
    barrel, closed; n=6, S=8; greek-key
    duplication: consists of two domains of the same fold
  4. 1793084Superfamily b.47.1: Trypsin-like serine proteases [50494] (5 families) (S)
  5. 1795550Family b.47.1.0: automated matches [191364] (1 protein)
    not a true family
  6. 1795551Protein automated matches [190438] (20 species)
    not a true protein

Species:

  1. 1795552Cellulomonas bogoriensis [TaxId:301388] [187656] (1 PDB entry)
  2. 1795554Coxsackievirus a16 [TaxId:231417] [238004] (1 PDB entry)
  3. 1795557Escherichia coli K-12 [TaxId:83333] [226179] (2 PDB entries)
    1. Domains for 3sti:
      1. 1795570Domain d3stia_: 3sti A: [216553]
        automated match to d1l1ja_
      2. 1795571Domain d3stib_: 3sti B: [216554]
        automated match to d1l1ja_
      3. 1795572Domain d3stic_: 3sti C: [216555]
        automated match to d1l1ja_
    2. Domains for 3stj:
      1. 1795558Domain d3stja1: 3stj A:11-236 [233625]
        Other proteins in same PDB: d3stja2, d3stjb2, d3stjc2, d3stjd2, d3stje2, d3stjf2, d3stjg2, d3stjh2, d3stji2, d3stjj2, d3stjk2, d3stjl2
        automated match to d1ky9a2
      2. 1795559Domain d3stjb1: 3stj B:11-236 [233622]
        Other proteins in same PDB: d3stja2, d3stjb2, d3stjc2, d3stjd2, d3stje2, d3stjf2, d3stjg2, d3stjh2, d3stji2, d3stjj2, d3stjk2, d3stjl2
        automated match to d1ky9a2
      3. 1795560Domain d3stjc1: 3stj C:11-236 [233627]
        Other proteins in same PDB: d3stja2, d3stjb2, d3stjc2, d3stjd2, d3stje2, d3stjf2, d3stjg2, d3stjh2, d3stji2, d3stjj2, d3stjk2, d3stjl2
        automated match to d1ky9a2
      4. 1795561Domain d3stjd1: 3stj D:11-236 [233629]
        Other proteins in same PDB: d3stja2, d3stjb2, d3stjc2, d3stjd2, d3stje2, d3stjf2, d3stjg2, d3stjh2, d3stji2, d3stjj2, d3stjk2, d3stjl2
        automated match to d1ky9a2
      5. 1795562Domain d3stje1: 3stj E:11-236 [239759]
        Other proteins in same PDB: d3stja2, d3stjb2, d3stjc2, d3stjd2, d3stje2, d3stjf2, d3stjg2, d3stjh2, d3stji2, d3stjj2, d3stjk2, d3stjl2
        automated match to d3stjb1
      6. 1795563Domain d3stjf1: 3stj F:11-236 [239761]
        Other proteins in same PDB: d3stja2, d3stjb2, d3stjc2, d3stjd2, d3stje2, d3stjf2, d3stjg2, d3stjh2, d3stji2, d3stjj2, d3stjk2, d3stjl2
        automated match to d3stjb1
      7. 1795564Domain d3stjg1: 3stj G:11-236 [239763]
        Other proteins in same PDB: d3stja2, d3stjb2, d3stjc2, d3stjd2, d3stje2, d3stjf2, d3stjg2, d3stjh2, d3stji2, d3stjj2, d3stjk2, d3stjl2
        automated match to d3stjb1
      8. 1795565Domain d3stjh1: 3stj H:11-236 [239765]
        Other proteins in same PDB: d3stja2, d3stjb2, d3stjc2, d3stjd2, d3stje2, d3stjf2, d3stjg2, d3stjh2, d3stji2, d3stjj2, d3stjk2, d3stjl2
        automated match to d3stjb1
      9. 1795566Domain d3stji1: 3stj I:11-236 [239767]
        Other proteins in same PDB: d3stja2, d3stjb2, d3stjc2, d3stjd2, d3stje2, d3stjf2, d3stjg2, d3stjh2, d3stji2, d3stjj2, d3stjk2, d3stjl2
        automated match to d3stjb1
      10. 1795567Domain d3stjj1: 3stj J:11-236 [239769]
        Other proteins in same PDB: d3stja2, d3stjb2, d3stjc2, d3stjd2, d3stje2, d3stjf2, d3stjg2, d3stjh2, d3stji2, d3stjj2, d3stjk2, d3stjl2
        automated match to d3stjb1
      11. 1795568Domain d3stjk1: 3stj K:11-236 [239771]
        Other proteins in same PDB: d3stja2, d3stjb2, d3stjc2, d3stjd2, d3stje2, d3stjf2, d3stjg2, d3stjh2, d3stji2, d3stjj2, d3stjk2, d3stjl2
        automated match to d3stjb1
      12. 1795569Domain d3stjl1: 3stj L:11-236 [239773]
        Other proteins in same PDB: d3stja2, d3stjb2, d3stjc2, d3stjd2, d3stje2, d3stjf2, d3stjg2, d3stjh2, d3stji2, d3stjj2, d3stjk2, d3stjl2
        automated match to d3stjb1
  4. 1795573Human (Homo sapiens) [TaxId:9606] [187421] (52 PDB entries)
    1. Domain for 2asu:
    2. Domains for 2bdg:
      1. 1795584Domain d2bdga_: 2bdg A: [163046]
        automated match to d1npma_
        complexed with cl, na, ni, pbz
      2. 1795585Domain d2bdgb_: 2bdg B: [163047]
        automated match to d1npma_
        complexed with cl, na, ni, pbz
    3. Domains for 2bdh:
      1. 1795631Domain d2bdha_: 2bdh A: [241288]
        automated match to d2bdga_
        complexed with pbz, zn
      2. 1795632Domain d2bdhb_: 2bdh B: [241289]
        automated match to d2bdga_
        complexed with pbz, zn
      3. 1795633Domain d2bdhc_: 2bdh C: [241290]
        automated match to d2bdga_
        complexed with pbz, zn
      4. 1795634Domain d2bdhd_: 2bdh D: [241291]
        automated match to d2bdga_
        complexed with pbz, zn
    4. Domains for 2bdi:
      1. 1795638Domain d2bdia_: 2bdi A: [241292]
        automated match to d2bdga_
        complexed with co, pbz
      2. 1795639Domain d2bdib_: 2bdi B: [241293]
        automated match to d2bdga_
        complexed with co, pbz
      3. 1795640Domain d2bdic_: 2bdi C: [241294]
        automated match to d2bdga_
        complexed with co, pbz
      4. 1795641Domain d2bdid_: 2bdi D: [241295]
        automated match to d2bdga_
        complexed with co, pbz
      5. 1795642Domain d2bdie_: 2bdi E: [241296]
        automated match to d2bdga_
        complexed with co, pbz
      6. 1795643Domain d2bdif_: 2bdi F: [241297]
        automated match to d2bdga_
        complexed with co, pbz
      7. 1795644Domain d2bdig_: 2bdi G: [241298]
        automated match to d2bdga_
        complexed with co, pbz
      8. 1795645Domain d2bdih_: 2bdi H: [241299]
        automated match to d2bdga_
        complexed with co, pbz
      9. 1795646Domain d2bdii_: 2bdi I: [241300]
        automated match to d2bdga_
        complexed with co, pbz
      10. 1795647Domain d2bdij_: 2bdi J: [241301]
        automated match to d2bdga_
        complexed with co, pbz
      11. 1795648Domain d2bdik_: 2bdi K: [241302]
        automated match to d2bdga_
        complexed with co, pbz
      12. 1795649Domain d2bdil_: 2bdi L: [241303]
        automated match to d2bdga_
        complexed with co, pbz
      13. 1795650Domain d2bdim_: 2bdi M: [241304]
        automated match to d2bdga_
        complexed with co, pbz
      14. 1795651Domain d2bdin_: 2bdi N: [241305]
        automated match to d2bdga_
        complexed with co, pbz
      15. 1795652Domain d2bdio_: 2bdi O: [241306]
        automated match to d2bdga_
        complexed with co, pbz
      16. 1795653Domain d2bdip_: 2bdi P: [241307]
        automated match to d2bdga_
        complexed with co, pbz
    5. Domain for 2i6q:
    6. Domain for 2i6s:
    7. Domain for 2odp:
    8. Domain for 2odq:
    9. Domain for 2oq5:
    10. Domain for 2psx:
    11. Domain for 2psy:
    12. Domains for 2qxg:
      1. 1795619Domain d2qxga_: 2qxg A: [167865]
        automated match to d1npma_
        complexed with k7i
      2. 1795620Domain d2qxgb_: 2qxg B: [167866]
        automated match to d1npma_
        complexed with k7i
    13. Domain for 2qxh:
    14. Domain for 2qxi:
    15. Domain for 2qxj:
    16. Domains for 2qy0:
      1. 1795604Domain d2qy0b_: 2qy0 B: [151467]
        Other proteins in same PDB: d2qy0a1, d2qy0a2, d2qy0c1, d2qy0c2
        automated match to d2qxia_
        complexed with gol
      2. 1795605Domain d2qy0d_: 2qy0 D: [151468]
        Other proteins in same PDB: d2qy0a1, d2qy0a2, d2qy0c1, d2qy0c2
        automated match to d2qxia_
        complexed with gol
    17. Domain for 2zgc:
    18. Domain for 2zgh:
    19. Domain for 2zgj:
    20. Domain for 2zks:
    21. Domains for 3bsq:
      1. 1795624Domain d3bsqa_: 3bsq A: [172813]
        automated match to d1npma_
        complexed with so4
      2. 1795625Domain d3bsqb_: 3bsq B: [172814]
        automated match to d1npma_
        complexed with so4
      3. 1795626Domain d3bsqc_: 3bsq C: [172815]
        automated match to d1npma_
        complexed with so4
    22. Domain for 3dfj:
    23. Domain for 3dfl:
    24. Domain for 3e0n:
    25. Domain for 3e0p:
    26. Domain for 3e16:
    27. Domain for 3e1x:
    28. Domain for 3fvf:
    29. Domain for 3gov:
    30. Domain for 3gyl:
    31. Domains for 3gym:
      1. 1795617Domain d3gyma_: 3gym A: [232350]
        Other proteins in same PDB: d3gymi_, d3gymj_
        automated match to d3gylb_
      2. 1795618Domain d3gymb_: 3gym B: [232351]
        Other proteins in same PDB: d3gymi_, d3gymj_
        automated match to d3gylb_
    32. Domain for 3num:
    33. Domains for 3tjn:
      1. 1795627Domain d3tjna_: 3tjn A: [249916]
        automated match to d3tjoa_
      2. 1795628Domain d3tjnb_: 3tjn B: [249917]
        automated match to d3tjoa_
      3. 1795629Domain d3tjnd_: 3tjn D: [249918]
        automated match to d3tjoa_
    34. Domains for 3tjo:
      1. 1795592Domain d3tjoa_: 3tjo A: [216839]
        automated match to d1l1ja_
        complexed with bog, gol, so4; mutant
      2. 1795593Domain d3tjob_: 3tjo B: [216840]
        automated match to d1l1ja_
        complexed with bog, gol, so4; mutant
      3. 1795594Domain d3tjod_: 3tjo D: [216841]
        automated match to d1l1ja_
        complexed with bog, gol, so4; mutant
    35. Domains for 4kga:
      1. 1795608Domain d4kgaa_: 4kga A: [256852]
        automated match to d2bdga_
        complexed with edo, ni
      2. 1795609Domain d4kgab_: 4kga B: [256854]
        automated match to d2bdga_
        complexed with edo, ni
    36. Domain for 4kp0:
    37. Domain for 4na7:
    38. Domain for 4na8:
    39. Domains for 4q7x:
      1. 1795615Domain d4q7xa_: 4q7x A: [267270]
        automated match to d4q7za_
        complexed with gol, nag
      2. 1795616Domain d4q7xb_: 4q7x B: [267271]
        automated match to d4q7za_
        complexed with gol, nag
    40. Domain for 4q7y:
    41. Domain for 4q7z:
    42. Domains for 4q80:
      1. 1795636Domain d4q80a_: 4q80 A: [267272]
        automated match to d4q7za_
        complexed with 2ys, nag
      2. 1795637Domain d4q80b_: 4q80 B: [267273]
        automated match to d4q7za_
        complexed with 2ys, nag
    43. Domains for 4qt8:
      1. 1795656Domain d4qt8c_: 4qt8 C: [259712]
        automated match to d2asub_
      2. 1795657Domain d4qt8d_: 4qt8 D: [259713]
        automated match to d2asub_
    44. Domain for 4ty7:
    45. Domain for 4wxi:
    46. Domain for 4x6m:
    47. Domain for 4x6o:
    48. Domain for 4xde:
    49. Domain for 4xe4:
    50. Domain for 4y8x:
    51. Domain for 4y8y:
    52. Domain for 4y8z:
  5. 1795658Human coxsackievirus b4 [TaxId:12073] [255005] (1 PDB entry)
  6. 1795660Human enterovirus 71 [TaxId:103922] [256150] (1 PDB entry)
  7. 1795662Human enterovirus 71 [TaxId:39054] [189708] (7 PDB entries)
    1. Domains for 3qzq:
      1. 1795668Domain d3qzqa_: 3qzq A: [184736]
        automated match to d1l1na_
        complexed with ag7; mutant
      2. 1795669Domain d3qzqb_: 3qzq B: [184737]
        automated match to d1l1na_
        complexed with ag7; mutant
      3. 1795670Domain d3qzqc_: 3qzq C: [184738]
        automated match to d1l1na_
        complexed with ag7; mutant
      4. 1795671Domain d3qzqd_: 3qzq D: [184739]
        automated match to d1l1na_
        complexed with ag7; mutant
    2. Domains for 3qzr:
      1. 1795663Domain d3qzra_: 3qzr A: [184740]
        automated match to d1l1na_
        complexed with ag7, edo; mutant
      2. 1795664Domain d3qzrb_: 3qzr B: [184741]
        automated match to d1l1na_
        complexed with ag7, edo; mutant
    3. Domains for 3r0f:
      1. 1795665Domain d3r0fa_: 3r0f A: [184754]
        automated match to d1l1na_
        complexed with ag7, edo; mutant
      2. 1795666Domain d3r0fb_: 3r0f B: [184755]
        automated match to d1l1na_
        complexed with ag7, edo; mutant
    4. Domain for 4fvb:
    5. Domain for 4fvd:
    6. Domain for 4ghq:
    7. Domains for 4ght:
      1. 1795673Domain d4ghta_: 4ght A: [221918]
        automated match to d3zv9a_
        complexed with ag7
      2. 1795674Domain d4ghtb_: 4ght B: [221919]
        automated match to d3zv9a_
        complexed with ag7
  8. 1795676Human rhinovirus 14 [TaxId:12131] [255241] (1 PDB entry)
  9. 1795678Infectious bronchitis virus [TaxId:11120] [188342] (2 PDB entries)
    1. Domains for 2q6d:
      1. 1795681Domain d2q6da_: 2q6d A: [167447]
        automated match to d1lvod_
      2. 1795682Domain d2q6db_: 2q6d B: [167448]
        automated match to d1lvod_
      3. 1795683Domain d2q6dc_: 2q6d C: [167449]
        automated match to d1lvod_
    2. Domains for 2q6f:
      1. 1795679Domain d2q6fa_: 2q6f A: [167453]
        automated match to d1lvod_
        complexed with 3ih
      2. 1795680Domain d2q6fb_: 2q6f B: [167454]
        automated match to d1lvod_
        complexed with 3ih
  10. 1795684Middle east respiratory syndrome coronavirus [TaxId:1335626] [272740] (5 PDB entries)
    1. Domains for 4wmd:
      1. 1795696Domain d4wmda_: 4wmd A: [272745]
        automated match to d2ynaa_
        complexed with 1pe, peg, pg4, pge
      2. 1795697Domain d4wmdb_: 4wmd B: [272741]
        automated match to d2ynaa_
        complexed with 1pe, peg, pg4, pge
      3. 1795698Domain d4wmdc_: 4wmd C: [272750]
        automated match to d2ynaa_
        complexed with 1pe, peg, pg4, pge
    2. Domains for 4wme:
      1. 1795685Domain d4wmea_: 4wme A: [272742]
        automated match to d2ynaa_
        complexed with edo
      2. 1795686Domain d4wmeb_: 4wme B: [272743]
        automated match to d2ynaa_
        complexed with edo
      3. 1795687Domain d4wmec_: 4wme C: [272748]
        automated match to d2ynaa_
        complexed with edo
      4. 1795688Domain d4wmed_: 4wme D: [272744]
        automated match to d2ynaa_
        complexed with edo
    3. Domains for 4wmf:
      1. 1795689Domain d4wmfa_: 4wmf A: [272746]
        automated match to d2ynaa_
        complexed with peg, pg4
      2. 1795690Domain d4wmfb_: 4wmf B: [272747]
        automated match to d2ynaa_
        complexed with peg, pg4
      3. 1795691Domain d4wmfc_: 4wmf C: [272749]
        automated match to d2ynaa_
        complexed with peg, pg4
    4. Domains for 4ylu:
      1. 1795692Domain d4ylua_: 4ylu A: [274082]
        automated match to d2ynaa_
        complexed with act, r30
      2. 1795693Domain d4ylub_: 4ylu B: [274079]
        automated match to d2ynaa_
        complexed with act, r30
      3. 1795694Domain d4yluc_: 4ylu C: [274081]
        automated match to d2ynaa_
        complexed with act, r30
      4. 1795695Domain d4ylud_: 4ylu D: [274080]
        automated match to d2ynaa_
        complexed with act, r30
    5. Domains for 5c3n:
      1. 1795699Domain d5c3na_: 5c3n A: [280120]
        automated match to d2ynaa_
      2. 1795700Domain d5c3nb_: 5c3n B: [280119]
        automated match to d2ynaa_
  11. 1795701Nocardiopsis alba [TaxId:53437] [187967] (1 PDB entry)
  12. 1795704Saccharopolyspora erythraea [TaxId:1836] [237652] (1 PDB entry)
  13. 1795706Sarcoptes scabiei [TaxId:197185] [188883] (2 PDB entries)
    1. Domains for 3h7o:
      1. 1795707Domain d3h7oa_: 3h7o A: [177308]
        automated match to d1fxya_
        complexed with gol, so4
      2. 1795708Domain d3h7ob_: 3h7o B: [177309]
        automated match to d1fxya_
        complexed with gol, so4
    2. Domains for 3h7t:
      1. 1795709Domain d3h7ta_: 3h7t A: [199492]
        automated match to d3h7tb_
        complexed with zn
      2. 1795710Domain d3h7tb_: 3h7t B: [196574]
        automated match to d3h7oa_
        complexed with zn
  14. 1795711Staphylococcus aureus [TaxId:1280] [187423] (4 PDB entries)
    1. Domains for 2as9:
      1. 1795712Domain d2as9a_: 2as9 A: [162886]
        automated match to d1qy6a_
        complexed with zn
      2. 1795713Domain d2as9b_: 2as9 B: [162887]
        automated match to d1qy6a_
        complexed with zn
    2. Domains for 2vid:
      1. 1795717Domain d2vida_: 2vid A: [198445]
        automated match to d2vidb_
      2. 1795718Domain d2vidb_: 2vid B: [195319]
        automated match to d2as9a_
    3. Domains for 4k1s:
      1. 1795719Domain d4k1sa_: 4k1s A: [256833]
        automated match to d2vida_
      2. 1795720Domain d4k1sb_: 4k1s B: [258916]
        automated match to d2vida_
    4. Domains for 4k1t:
      1. 1795714Domain d4k1ta_: 4k1t A: [258915]
        automated match to d2vida_
        complexed with cl, so4, zn
      2. 1795715Domain d4k1tb_: 4k1t B: [262785]
        automated match to d4k1ta_
        complexed with cl, so4, zn
      3. 1795716Domain d4k1tc_: 4k1t C: [262786]
        automated match to d4k1ta_
        complexed with cl, so4, zn
  15. 1795721Staphylococcus aureus [TaxId:93061] [193276] (6 PDB entries)
    1. Domains for 2w7s:
      1. 1795727Domain d2w7sa_: 2w7s A: [206694]
        automated match to d3ufab_
      2. 1795728Domain d2w7sb_: 2w7s B: [206695]
        automated match to d3ufab_
      3. 1795729Domain d2w7sc_: 2w7s C: [206696]
        automated match to d3ufab_
      4. 1795730Domain d2w7sd_: 2w7s D: [206697]
        automated match to d3ufab_
    2. Domains for 2w7u:
      1. 1795734Domain d2w7ua_: 2w7u A: [206698]
        automated match to d3ufab_
      2. 1795735Domain d2w7ub_: 2w7u B: [206699]
        automated match to d3ufab_
      3. 1795736Domain d2w7uc_: 2w7u C: [206700]
        automated match to d3ufab_
      4. 1795737Domain d2w7ud_: 2w7u D: [206701]
        automated match to d3ufab_
    3. Domains for 3ufa:
      1. 1795731Domain d3ufaa_: 3ufa A: [200981]
        automated match to d3ufab_
        complexed with cl, vpf
      2. 1795732Domain d3ufab_: 3ufa B: [193277]
        automated match to d2as9a_
        complexed with cl, vpf
    4. Domain for 4ink:
    5. Domain for 4inl:
    6. Domains for 4mvn:
      1. 1795723Domain d4mvna_: 4mvn A: [236217]
        automated match to d3ufab_
        complexed with i1s
      2. 1795724Domain d4mvnb_: 4mvn B: [236218]
        automated match to d3ufab_
        complexed with i1s
      3. 1795725Domain d4mvnc_: 4mvn C: [236220]
        automated match to d3ufab_
        complexed with i1s
      4. 1795726Domain d4mvnd_: 4mvn D: [236219]
        automated match to d3ufab_
        complexed with i1s
  16. 1795738Thale cress (Arabidopsis thaliana) [TaxId:3702] [256299] (1 PDB entry)
  17. 1795742Thermobifida fusca YX [TaxId:269800] [187339] (1 PDB entry)
  18. 1795745Tobacco vein mottling virus [TaxId:12228] [189503] (1 PDB entry)
  19. 1795748Tylonycteris bat coronavirus hku4 [TaxId:694007] [228570] (6 PDB entries)
    1. Domains for 2yna:
      1. 1795749Domain d2ynaa_: 2yna A: [228571]
        automated match to d3ea8a_
        complexed with gol, imd, ni
      2. 1795750Domain d2ynab_: 2yna B: [231657]
        automated match to d2ynaa_
        complexed with gol, imd, ni
    2. Domains for 2ynb:
      1. 1795751Domain d2ynba_: 2ynb A: [231658]
        automated match to d2ynaa_
        complexed with g85, ni
      2. 1795752Domain d2ynbb_: 2ynb B: [231660]
        automated match to d2ynaa_
        complexed with g85, ni
    3. Domains for 4yo9:
      1. 1795759Domain d4yo9a_: 4yo9 A: [275730]
        automated match to d2ynaa_
        complexed with act, fmt, ipa, mpd, sin, zn
      2. 1795760Domain d4yo9b_: 4yo9 B: [275732]
        automated match to d2ynaa_
        complexed with act, fmt, ipa, mpd, sin, zn
    4. Domains for 4yog:
      1. 1795757Domain d4yoga_: 4yog A: [275729]
        automated match to d2ynaa_
        complexed with 4f5, act
      2. 1795758Domain d4yogb_: 4yog B: [275731]
        automated match to d2ynaa_
        complexed with 4f5, act
    5. Domains for 4yoi:
      1. 1795753Domain d4yoia_: 4yoi A: [275734]
        automated match to d2ynaa_
        complexed with 4f4, act, fmt
      2. 1795754Domain d4yoib_: 4yoi B: [275736]
        automated match to d2ynaa_
        complexed with 4f4, act, fmt
    6. Domains for 4yoj:
      1. 1795755Domain d4yoja_: 4yoj A: [275733]
        automated match to d2ynaa_
        complexed with act, fmt, rfm
      2. 1795756Domain d4yojb_: 4yoj B: [275735]
        automated match to d2ynaa_
        complexed with act, fmt, rfm
  20. 1795761Worm (Eisenia fetida) [TaxId:6396] [188141] (1 PDB entry)

More info for Protein automated matches from b.47.1.0: automated matches

Timeline for Protein automated matches from b.47.1.0: automated matches: