Lineage for Protein: automated matches

  1. Root: SCOPe 2.02
  2. 1103260Class b: All beta proteins [48724] (174 folds)
  3. 1122537Fold b.36: PDZ domain-like [50155] (1 superfamily)
    contains barrel, partly opened; n*=4, S*=8; meander; capped by alpha-helix
  4. 1122538Superfamily b.36.1: PDZ domain-like [50156] (7 families) (S)
    peptide-binding domain
  5. 1123002Family b.36.1.0: automated matches [191362] (1 protein)
    not a true family
  6. 1123003Protein automated matches [190436] (3 species)
    not a true protein

Species:

  1. 1123004Human (Homo sapiens) [TaxId:9606] [187333] (17 PDB entries)
    1. Domain for 2iwn:
    2. Domains for 2jik:
      1. 1123011Domain d2jika_: 2jik A: [166209]
        automated match to d1qlca_
      2. 1123012Domain d2jikb_: 2jik B: [166210]
        automated match to d1qlca_
    3. Domain for 2jin:
    4. Domains for 2p3w:
      1. 1123016Domain d2p3wa_: 2p3w A: [166998]
        automated match to d2pzda1
      2. 1123017Domain d2p3wb_: 2p3w B: [166999]
        automated match to d2pzda1
    5. Domains for 2pnt:
      1. 1123027Domain d2pnta_: 2pnt A: [167228]
        automated match to d1q3oa_
        complexed with cl
      2. 1123028Domain d2pntb_: 2pnt B: [167229]
        automated match to d1q3oa_
        complexed with cl
    6. Domains for 2q3g:
      1. 1123005Domain d2q3ga_: 2q3g A: [167406]
        automated match to d1rgwa_
        complexed with cl, edo
      2. 1123006Domain d2q3gb_: 2q3g B: [167407]
        automated match to d1rgwa_
        complexed with cl, edo
    7. Domain for 2q9v:
    8. Domains for 2v1w:
      1. 1123018Domain d2v1wa_: 2v1w A: [168294]
        automated match to d1rgwa_
        complexed with 1pe, edo, mg
      2. 1123019Domain d2v1wb_: 2v1w B: [168295]
        automated match to d1rgwa_
        complexed with 1pe, edo, mg
    9. Domains for 2v90:
      1. 1123021Domain d2v90a_: 2v90 A: [168381]
        automated match to d1g9oa_
        complexed with so4
      2. 1123022Domain d2v90b_: 2v90 B: [168382]
        automated match to d1g9oa_
        complexed with so4
      3. 1123023Domain d2v90c_: 2v90 C: [168383]
        automated match to d1g9oa_
        complexed with so4
      4. 1123024Domain d2v90d_: 2v90 D: [168384]
        automated match to d1g9oa_
        complexed with so4
      5. 1123025Domain d2v90e_: 2v90 E: [168385]
        automated match to d1g9oa_
        complexed with so4
      6. 1123026Domain d2v90f_: 2v90 F: [168386]
        automated match to d1g9oa_
        complexed with so4
    10. Domains for 2vsp:
      1. 1123029Domain d2vspa_: 2vsp A: [168791]
        automated match to d1i92a_
      2. 1123030Domain d2vspb_: 2vsp B: [168792]
        automated match to d1i92a_
      3. 1123031Domain d2vspc_: 2vsp C: [168793]
        automated match to d1i92a_
      4. 1123032Domain d2vspd_: 2vsp D: [168794]
        automated match to d1i92a_
    11. Domain for 2vwr:
    12. Domain for 2z17:
    13. Domain for 3bpu:
    14. Domain for 3khf:
    15. Domain for 3o46:
    16. Domains for 3shu:
      1. 1123033Domain d3shua_: 3shu A: [185405]
        automated match to d1tq3a1
      2. 1123034Domain d3shub_: 3shu B: [185406]
        automated match to d1tq3a1
    17. Domain for 4e34:
  2. 1123036Mouse (Mus musculus) [TaxId:10090] [189959] (5 PDB entries)
    1. Domains for 3ngh:
      1. 1123043Domain d3ngha_: 3ngh A: [182262]
        automated match to d1g9oa_
      2. 1123044Domain d3nghb_: 3ngh B: [182263]
        automated match to d1g9oa_
    2. Domain for 3r68:
    3. Domains for 3r69:
      1. 1123039Domain d3r69a_: 3r69 A: [184815]
        automated match to d1gq5a_
        complexed with cit
      2. 1123040Domain d3r69b_: 3r69 B: [184816]
        automated match to d1gq5a_
        complexed with cit
    4. Domain for 3vqf:
    5. Domains for 4f8k:
      1. 1123041Domain d4f8ka_: 4f8k A: [196634]
        automated match to d3ngha_
      2. 1123042Domain d4f8kb_: 4f8k B: [196635]
        automated match to d3ngha_
  3. 1123045Norway rat (Rattus norvegicus) [TaxId:10116] [187666] (4 PDB entries)
    1. Domains for 2egk:
      1. 1123049Domain d2egka_: 2egk A: [164009]
        automated match to d1gq5a_
        complexed with po4
      2. 1123050Domain d2egkb_: 2egk B: [164010]
        automated match to d1gq5a_
        complexed with po4
      3. 1123051Domain d2egkc_: 2egk C: [164011]
        automated match to d1gq5a_
        complexed with po4
      4. 1123052Domain d2egkd_: 2egk D: [164012]
        automated match to d1gq5a_
        complexed with po4
    2. Domain for 2egn:
    3. Domain for 3qdo:
    4. Domain for 3qe1:

More info for Protein automated matches from b.36.1.0: automated matches

Timeline for Protein automated matches from b.36.1.0: automated matches: