Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2391025Fold b.50: Acid proteases [50629] (1 superfamily)
    barrel, closed; n=6, S=10, complex topology
  4. 2391026Superfamily b.50.1: Acid proteases [50630] (4 families) (S)
  5. 2391027Family b.50.1.1: Retroviral protease (retropepsin) [50631] (9 protein domains)
    dimer of identical mono-domain chains, each containing (6,10) barrel
  6. 2392314Protein automated matches [190433] (11 species)
    not a true protein

Species:

  1. 2392315Feline immunodeficiency virus (isolate petaluma) [TaxId:11674] [187795] (1 PDB entry)
  2. 2392317Feline immunodeficiency virus [TaxId:11673] [189983] (2 PDB entries)
    1. Domains for 3ogp:
      1. 2392318Domain d3ogpa_: 3ogp A: [183019]
        automated match to d6fiva_
        complexed with 017, dms
      2. 2392319Domain d3ogpb_: 3ogp B: [183020]
        automated match to d6fiva_
        complexed with 017, dms
    2. Domains for 3ogq:
      1. 2392320Domain d3ogqa_: 3ogq A: [183021]
        automated match to d6fiva_
        complexed with ab1, dms
      2. 2392321Domain d3ogqb_: 3ogq B: [183022]
        automated match to d6fiva_
        complexed with ab1, dms
  3. 2392322Hiv-1 m:b_arv2/sf2 [TaxId:11685] [188968] (6 PDB entries)
    1. Domains for 3ekq:
      1. 2392333Domain d3ekqa_: 3ekq A: [175025]
        automated match to d1k6ca_
        complexed with po4, roc
      2. 2392334Domain d3ekqb_: 3ekq B: [175026]
        automated match to d1k6ca_
        complexed with po4, roc
    2. Domains for 3el4:
      1. 2392325Domain d3el4a_: 3el4 A: [175045]
        automated match to d1k6ca_
        complexed with act, roc
      2. 2392326Domain d3el4b_: 3el4 B: [175046]
        automated match to d1k6ca_
        complexed with act, roc
    3. Domains for 3el9:
      1. 2392323Domain d3el9a_: 3el9 A: [175049]
        automated match to d1k6ca_
        complexed with act, dr7, po4
      2. 2392324Domain d3el9b_: 3el9 B: [175050]
        automated match to d1k6ca_
        complexed with act, dr7, po4
    4. Domains for 3em3:
      1. 2392335Domain d3em3a_: 3em3 A: [175073]
        automated match to d1kzka_
        complexed with 478, act
      2. 2392336Domain d3em3b_: 3em3 B: [175074]
        automated match to d1kzka_
        complexed with 478, act
    5. Domains for 3em4:
      1. 2392329Domain d3em4a_: 3em4 A: [175075]
        automated match to d1kzka_
        complexed with dr7, po4
      2. 2392330Domain d3em4b_: 3em4 B: [175076]
        automated match to d1kzka_
        complexed with dr7, po4
      3. 2392331Domain d3em4u_: 3em4 U: [175077]
        automated match to d1kzka_
        complexed with dr7, po4
      4. 2392332Domain d3em4v_: 3em4 V: [175078]
        automated match to d1kzka_
        complexed with dr7, po4
    6. Domains for 3em6:
      1. 2392327Domain d3em6a_: 3em6 A: [175083]
        automated match to d1kzka_
        complexed with 017, act, po4; mutant
      2. 2392328Domain d3em6b_: 3em6 B: [175084]
        automated match to d1kzka_
        complexed with 017, act, po4; mutant
  4. 2392337Human immunodeficiency virus 1 (z2/cdc-z34 isolate) [TaxId:11683] [189840] (10 PDB entries)
    1. Domains for 2xye:
      1. 2392356Domain d2xyea_: 2xye A: [170478]
        automated match to d1k6ca_
        complexed with cxg
      2. 2392357Domain d2xyeb_: 2xye B: [170479]
        automated match to d1k6ca_
        complexed with cxg
    2. Domains for 2xyf:
      1. 2392348Domain d2xyfa_: 2xyf A: [170480]
        automated match to d1k6ca_
        complexed with g40
      2. 2392349Domain d2xyfb_: 2xyf B: [170481]
        automated match to d1k6ca_
        complexed with g40
    3. Domains for 5agz:
      1. 2392338Domain d5agza_: 5agz A: [272187]
        automated match to d2xyfa_
        complexed with cl, qha
      2. 2392339Domain d5agzb_: 5agz B: [272189]
        automated match to d2xyfa_
        complexed with cl, qha
    4. Domains for 5ah6:
      1. 2392350Domain d5ah6a_: 5ah6 A: [272186]
        automated match to d2xyfa_
        complexed with c7u, cl
      2. 2392351Domain d5ah6b_: 5ah6 B: [272185]
        automated match to d2xyfa_
        complexed with c7u, cl
    5. Domains for 5ah7:
      1. 2392354Domain d5ah7a_: 5ah7 A: [272177]
        automated match to d2xyfa_
        complexed with c7j, cl
      2. 2392355Domain d5ah7b_: 5ah7 B: [272178]
        automated match to d2xyfa_
        complexed with c7j, cl
    6. Domains for 5ah8:
      1. 2392340Domain d5ah8a_: 5ah8 A: [272194]
        automated match to d2xyfa_
        complexed with c7w, cl
      2. 2392341Domain d5ah8b_: 5ah8 B: [272193]
        automated match to d2xyfa_
        complexed with c7w, cl
    7. Domains for 5ah9:
      1. 2392344Domain d5ah9a_: 5ah9 A: [272182]
        automated match to d2xyfa_
        complexed with c7l, cl
      2. 2392345Domain d5ah9b_: 5ah9 B: [272190]
        automated match to d2xyfa_
        complexed with c7l, cl
    8. Domains for 5aha:
      1. 2392342Domain d5ahaa_: 5aha A: [272181]
        automated match to d2xyfa_
        complexed with cl, zlp
      2. 2392343Domain d5ahab_: 5aha B: [272184]
        automated match to d2xyfa_
        complexed with cl, zlp
    9. Domains for 5ahb:
      1. 2392352Domain d5ahba_: 5ahb A: [272188]
        automated match to d2xyfa_
        complexed with cl, j5l
      2. 2392353Domain d5ahbb_: 5ahb B: [272179]
        automated match to d2xyfa_
        complexed with cl, j5l
    10. Domains for 5ahc:
      1. 2392346Domain d5ahca_: 5ahc A: [272183]
        automated match to d2xyfa_
        complexed with cl, vxl
      2. 2392347Domain d5ahcb_: 5ahc B: [272180]
        automated match to d2xyfa_
        complexed with cl, vxl
  5. 2392358Human immunodeficiency virus 1 [TaxId:11676] [187327] (25 PDB entries)
    1. Domains for 1z8c:
      1. 2392408Domain d1z8ca_: 1z8c A: [162400]
        automated match to d1lzqa_
        complexed with 0zs, so4; mutant
      2. 2392409Domain d1z8cb_: 1z8c B: [162401]
        automated match to d1lzqa_
        complexed with 0zs, so4; mutant
    2. Domains for 2b60:
      1. 2392412Domain d2b60a_: 2b60 A: [162995]
        automated match to d1sgua_
        complexed with gol, rit; mutant
      2. 2392413Domain d2b60b_: 2b60 B: [162996]
        automated match to d1sgua_
        complexed with gol, rit; mutant
    3. Domains for 2b7z:
      1. 2392410Domain d2b7za_: 2b7z A: [163000]
        automated match to d1sgua_
        complexed with mk1; mutant
      2. 2392411Domain d2b7zb_: 2b7z B: [163001]
        automated match to d1sgua_
        complexed with mk1; mutant
    4. Domains for 2f3k:
      1. 2392377Domain d2f3ka_: 2f3k A: [164265]
        automated match to d1kzka_
        complexed with po4, ro1
      2. 2392378Domain d2f3kb_: 2f3k B: [164266]
        automated match to d1kzka_
        complexed with po4, ro1
    5. Domains for 2fdd:
      1. 2392367Domain d2fdda_: 2fdd A: [164334]
        automated match to d1rpia_
        complexed with 385
      2. 2392368Domain d2fddb_: 2fdd B: [164335]
        automated match to d1rpia_
        complexed with 385
    6. Domains for 2fle:
      1. 2392398Domain d2flea_: 2fle A: [164426]
        automated match to d1hvsa_
        complexed with ai, gol; mutant
      2. 2392399Domain d2fleb_: 2fle B: [164427]
        automated match to d1hvsa_
        complexed with ai, gol; mutant
    7. Domain for 2g69:
    8. Domain for 2hb2:
    9. Domains for 2hc0:
      1. 2392363Domain d2hc0a_: 2hc0 A: [165044]
        automated match to d1k6ca_
        complexed with ab2, br; mutant
      2. 2392364Domain d2hc0b_: 2hc0 B: [165045]
        automated match to d1k6ca_
        complexed with ab2, br; mutant
    10. Domains for 2j9j:
      1. 2392359Domain d2j9ja_: 2j9j A: [165954]
        automated match to d1b6ka_
        protein/DNA complex; protein/RNA complex; complexed with act, gol, so4
      2. 2392360Domain d2j9jb_: 2j9j B: [165955]
        automated match to d1b6ka_
        protein/DNA complex; protein/RNA complex; complexed with act, gol, so4
    11. Domains for 2je4:
      1. 2392361Domain d2je4a_: 2je4 A: [166142]
        automated match to d1b6ka_
        complexed with act, gol, so4
      2. 2392362Domain d2je4b_: 2je4 B: [166143]
        automated match to d1b6ka_
        complexed with act, gol, so4
    12. Domains for 2p3d:
      1. 2392415Domain d2p3da_: 2p3d A: [166995]
        automated match to d1a8ga_
        complexed with 3tl; mutant
      2. 2392416Domain d2p3db_: 2p3d B: [166996]
        automated match to d1a8ga_
        complexed with 3tl; mutant
    13. Domains for 2qd6:
      1. 2392365Domain d2qd6a_: 2qd6 A: [167535]
        automated match to d1fgcc_
        complexed with 065, act, cl, na; mutant
      2. 2392366Domain d2qd6b_: 2qd6 B: [167536]
        automated match to d1fgcc_
        complexed with 065, act, cl, na; mutant
    14. Domains for 3zps:
      1. 2392370Domain d3zpsa_: 3zps A: [228908]
        automated match to d2wl0a_
        complexed with cl, eqm
      2. 2392371Domain d3zpsb_: 3zps B: [228911]
        automated match to d2wl0a_
        complexed with cl, eqm
    15. Domains for 3zpt:
      1. 2392372Domain d3zpta_: 3zpt A: [228910]
        automated match to d2wl0a_
        complexed with cl, m8y
      2. 2392373Domain d3zptb_: 3zpt B: [228913]
        automated match to d2wl0a_
        complexed with cl, m8y
    16. Domains for 3zpu:
      1. 2392391Domain d3zpua_: 3zpu A: [228909]
        automated match to d2wl0a_
        complexed with cl, m8b
      2. 2392392Domain d3zpub_: 3zpu B: [228912]
        automated match to d2wl0a_
        complexed with cl, m8b
    17. Domains for 4njs:
      1. 2392383Domain d4njsa_: 4njs A: [238261]
        automated match to d1z8ca_
        complexed with g08
      2. 2392384Domain d4njsb_: 4njs B: [263147]
        automated match to d4njsa_
        complexed with g08
      3. 2392385Domain d4njsc_: 4njs C: [238262]
        automated match to d1z8ca_
        complexed with g08
      4. 2392386Domain d4njsd_: 4njs D: [263148]
        automated match to d4njsa_
        complexed with g08
    18. Domains for 4nju:
      1. 2392387Domain d4njua_: 4nju A: [266931]
        automated match to d4njsa_
        complexed with tpv
      2. 2392388Domain d4njub_: 4nju B: [266932]
        automated match to d4njsa_
        complexed with tpv
      3. 2392389Domain d4njuc_: 4nju C: [266933]
        automated match to d4njsa_
        complexed with tpv
      4. 2392390Domain d4njud_: 4nju D: [266934]
        automated match to d4njsa_
        complexed with tpv
    19. Domains for 4rvi:
      1. 2392404Domain d4rvia_: 4rvi A: [317155]
        automated match to d4njsa_
        complexed with g52
      2. 2392405Domain d4rvib_: 4rvi B: [317128]
        automated match to d4njsa_
        complexed with g52
      3. 2392406Domain d4rvic_: 4rvi C: [317084]
        automated match to d4njsa_
        complexed with g52
      4. 2392407Domain d4rvid_: 4rvi D: [317071]
        automated match to d4njsa_
        complexed with g52
    20. Domains for 4rvj:
      1. 2392379Domain d4rvja_: 4rvj A: [317054]
        automated match to d4njsa_
        complexed with 478
      2. 2392380Domain d4rvjb_: 4rvj B: [317077]
        automated match to d4njsa_
        complexed with 478
      3. 2392381Domain d4rvjc_: 4rvj C: [317062]
        automated match to d4njsa_
        complexed with 478
      4. 2392382Domain d4rvjd_: 4rvj D: [317090]
        automated match to d4njsa_
        complexed with 478
    21. Domains for 4rvx:
      1. 2392400Domain d4rvxa_: 4rvx A: [317047]
        automated match to d4njsa_
        complexed with 79g
      2. 2392401Domain d4rvxb_: 4rvx B: [317078]
        automated match to d4njsa_
        complexed with 79g
      3. 2392402Domain d4rvxc_: 4rvx C: [317059]
        automated match to d4njsa_
        complexed with 79g
      4. 2392403Domain d4rvxd_: 4rvx D: [317135]
        automated match to d4njsa_
        complexed with 79g
    22. Domains for 5b18:
      1. 2392393Domain d5b18a_: 5b18 A: [315507]
        automated match to d3oqda_
        complexed with act, cl
      2. 2392394Domain d5b18b_: 5b18 B: [315265]
        automated match to d3oqda_
        complexed with act, cl
      3. 2392395Domain d5b18c_: 5b18 C: [315285]
        automated match to d3oqda_
        complexed with act, cl
      4. 2392396Domain d5b18d_: 5b18 D: [315252]
        automated match to d3oqda_
        complexed with act, cl
    23. Domain for 5t2e:
    24. Domains for 5t2z:
      1. 2392375Domain d5t2za_: 5t2z A: [328234]
        automated match to d4njsa_
        complexed with 017
      2. 2392376Domain d5t2zb_: 5t2z B: [328153]
        automated match to d4njsa_
        complexed with 017
    25. Domain for 5v4y:
  6. 2392417Human immunodeficiency virus type 1 (bru isolate) [TaxId:11686] [188980] (3 PDB entries)
    1. Domains for 3jvw:
      1. 2392422Domain d3jvwa_: 3jvw A: [178850]
        automated match to d1fgcc_
        complexed with dmp; mutant
      2. 2392423Domain d3jvwb_: 3jvw B: [178851]
        automated match to d1fgcc_
        complexed with dmp; mutant
    2. Domains for 3jvy:
      1. 2392418Domain d3jvya_: 3jvy A: [178853]
        automated match to d1fgcc_
        complexed with 017, cl, na; mutant
      2. 2392419Domain d3jvyb_: 3jvy B: [178854]
        automated match to d1fgcc_
        complexed with 017, cl, na; mutant
    3. Domains for 3jw2:
      1. 2392420Domain d3jw2a_: 3jw2 A: [178857]
        automated match to d1fgcc_
        complexed with 017, cl, na; mutant
      2. 2392421Domain d3jw2b_: 3jw2 B: [178858]
        automated match to d1fgcc_
        complexed with 017, cl, na; mutant
  7. 2392424Human immunodeficiency virus type 1 (z2/cdc-z34 isolate) [TaxId:11683] [189175] (1 PDB entry)
  8. 2392427Human immunodeficiency virus type 1 [TaxId:11686] [193487] (1 PDB entry)
  9. 2392430Human immunodeficiency virus [TaxId:11686] [311331] (1 PDB entry)
  10. 2392433Human immunodeficiency virus [TaxId:12721] [188065] (13 PDB entries)
    1. Domain for 1w5x:
    2. Domains for 4a4q:
      1. 2392449Domain d4a4qa_: 4a4q A: [192830]
        automated match to d2xyfa_
        complexed with ux9
      2. 2392450Domain d4a4qb_: 4a4q B: [192527]
        automated match to d2xyfa_
        complexed with ux9
    3. Domains for 4a6b:
      1. 2392440Domain d4a6ba_: 4a6b A: [192228]
        automated match to d2wl0a_
        complexed with qg8
      2. 2392441Domain d4a6bb_: 4a6b B: [192229]
        automated match to d2wl0a_
        complexed with qg8
    4. Domains for 4a6c:
      1. 2392434Domain d4a6ca_: 4a6c A: [192230]
        automated match to d2wl0a_
        complexed with qg9
      2. 2392435Domain d4a6cb_: 4a6c B: [192231]
        automated match to d2wl0a_
        complexed with qg9
    5. Domains for 4coe:
      1. 2392455Domain d4coea_: 4coe A: [261497]
        automated match to d2xyfa_
        complexed with cl, m17
      2. 2392456Domain d4coeb_: 4coe B: [261494]
        automated match to d2xyfa_
        complexed with cl, m17
    6. Domains for 4cp7:
      1. 2392447Domain d4cp7a_: 4cp7 A: [261495]
        automated match to d2xyfa_
        complexed with 9mw, cl
      2. 2392448Domain d4cp7b_: 4cp7 B: [261496]
        automated match to d2xyfa_
        complexed with 9mw, cl
    7. Domains for 4cpq:
      1. 2392457Domain d4cpqa_: 4cpq A: [261765]
        automated match to d2xyfa_
        complexed with 9mw, cl
      2. 2392458Domain d4cpqb_: 4cpq B: [261767]
        automated match to d2xyfa_
        complexed with 9mw, cl
    8. Domains for 4cpr:
      1. 2392445Domain d4cpra_: 4cpr A: [261761]
        automated match to d2xyfa_
        complexed with 378, cl
      2. 2392446Domain d4cprb_: 4cpr B: [261762]
        automated match to d2xyfa_
        complexed with 378, cl
    9. Domains for 4cps:
      1. 2392436Domain d4cpsa_: 4cps A: [261755]
        automated match to d2xyfa_
        complexed with 1t8, cl
      2. 2392437Domain d4cpsb_: 4cps B: [261756]
        automated match to d2xyfa_
        complexed with 1t8, cl
    10. Domains for 4cpt:
      1. 2392442Domain d4cpta_: 4cpt A: [261764]
        automated match to d2xyfa_
        complexed with 1t8, cl
      2. 2392443Domain d4cptb_: 4cpt B: [261760]
        automated match to d2xyfa_
        complexed with 1t8, cl
    11. Domains for 4cpu:
      1. 2392451Domain d4cpua_: 4cpu A: [261759]
        automated match to d2xyfa_
        complexed with cl, v78
      2. 2392452Domain d4cpub_: 4cpu B: [261766]
        automated match to d2xyfa_
        complexed with cl, v78
    12. Domains for 4cpw:
      1. 2392438Domain d4cpwa_: 4cpw A: [261758]
        automated match to d2xyfa_
        complexed with cl, v78
      2. 2392439Domain d4cpwb_: 4cpw B: [261757]
        automated match to d2xyfa_
        complexed with cl, v78
    13. Domains for 4cpx:
      1. 2392453Domain d4cpxa_: 4cpx A: [261768]
        automated match to d2xyfa_
        complexed with cl, v78
      2. 2392454Domain d4cpxb_: 4cpx B: [261763]
        automated match to d2xyfa_
        complexed with cl, v78
  11. 2392459Mason-pfizer monkey virus [TaxId:11855] [189736] (1 PDB entry)

More info for Protein automated matches from b.50.1.1: Retroviral protease (retropepsin)

Timeline for Protein automated matches from b.50.1.1: Retroviral protease (retropepsin):