Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2919043Fold c.101: Undecaprenyl diphosphate synthase [64004] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 342156
  4. 2919044Superfamily c.101.1: Undecaprenyl diphosphate synthase [64005] (2 families) (S)
    the sheet topology is similar to those of the N-terminal domain of phosphoglycerate kinase and carbamate kinase
  5. 2919112Family c.101.1.0: automated matches [191361] (1 protein)
    not a true family
  6. 2919113Protein automated matches [190431] (13 species)
    not a true protein

Species:

  1. 2919114Acinetobacter baumannii [TaxId:470] [361341] (3 PDB entries)
    1. Domains for 6acs:
      1. 2919117Domain d6acsa_: 6acs A: [361342]
        Other proteins in same PDB: d6acsb2
        automated match to d5hxpa_
        complexed with cit, gol, ipa
      2. 2919118Domain d6acsb1: 6acs B:6-250 [361367]
        Other proteins in same PDB: d6acsb2
        automated match to d4u82a_
        complexed with cit, gol, ipa
    2. Domains for 6szg:
      1. 2919119Domain d6szga_: 6szg A: [379386]
        automated match to d5hxpa_
        complexed with ca, m2e, m2k
      2. 2919120Domain d6szgb_: 6szg B: [379393]
        automated match to d5hxpa_
        complexed with ca, m2e, m2k
    3. Domains for 6szh:
      1. 2919115Domain d6szha_: 6szh A: [379394]
        automated match to d5hxpa_
        complexed with ca, m2h
      2. 2919116Domain d6szhb_: 6szh B: [379385]
        automated match to d5hxpa_
        complexed with ca, m2h
  2. 2919121Campylobacter jejuni [TaxId:197] [189831] (1 PDB entry)
  3. 2919124Enterococcus faecalis [TaxId:1351] [387719] (1 PDB entry)
  4. 2919131Helicobacter pylori [TaxId:210] [187325] (2 PDB entries)
    1. Domains for 2d2r:
      1. 2919132Domain d2d2ra_: 2d2r A: [163563]
        automated match to d1uehb_
      2. 2919133Domain d2d2rb_: 2d2r B: [163564]
        automated match to d1uehb_
    2. Domains for 2dtn:
      1. 2919134Domain d2dtna_: 2dtn A: [163691]
        automated match to d1uehb_
        complexed with dpo
      2. 2919135Domain d2dtnb_: 2dtn B: [163692]
        automated match to d1uehb_
        complexed with dpo
  5. 2919136Lavandula lanata [TaxId:39330] [315377] (3 PDB entries)
    1. Domain for 5hc6:
    2. Domain for 5hc7:
    3. Domain for 5hc8:
  6. 2919140Methanosarcina mazei [TaxId:192952] [403038] (5 PDB entries)
    1. Domains for 7caq:
      1. 2919149Domain d7caqa_: 7caq A: [403145]
        automated match to d5hxpa_
        complexed with plm, po4
      2. 2919150Domain d7caqb_: 7caq B: [403144]
        automated match to d5hxpa_
        complexed with plm, po4
    2. Domains for 7car:
      1. 2919159Domain d7cara_: 7car A: [403099]
        automated match to d5hxpa_
        complexed with ipe, plm, po4
      2. 2919160Domain d7carb_: 7car B: [403121]
        automated match to d5hxpa_
        complexed with ipe, plm, po4
    3. Domains for 7cas:
      1. 2919161Domain d7casa_: 7cas A: [403054]
        automated match to d5hxpa_
        complexed with dpo, mg, plm, po4
      2. 2919162Domain d7casb_: 7cas B: [403147]
        automated match to d5hxpa_
        complexed with dpo, mg, plm, po4
    4. Domains for 7cav:
      1. 2919151Domain d7cava1: 7cav A:1-214 [403075]
        Other proteins in same PDB: d7cava2, d7cavb2, d7cavg2
        automated match to d5hxpa_
        complexed with dma, dpo, fq0, mg, po4
      2. 2919152Domain d7cavb1: 7cav B:1-219 [403058]
        Other proteins in same PDB: d7cava2, d7cavb2, d7cavg2
        automated match to d5hxpa_
        complexed with dma, dpo, fq0, mg, po4
      3. 2919153Domain d7cavc_: 7cav C: [403107]
        Other proteins in same PDB: d7cava2, d7cavb2, d7cavg2
        automated match to d5hxpa_
        complexed with dma, dpo, fq0, mg, po4
      4. 2919154Domain d7cavd_: 7cav D: [403100]
        Other proteins in same PDB: d7cava2, d7cavb2, d7cavg2
        automated match to d5hxpa_
        complexed with dma, dpo, fq0, mg, po4
      5. 2919155Domain d7cave_: 7cav E: [403130]
        Other proteins in same PDB: d7cava2, d7cavb2, d7cavg2
        automated match to d5hxpa_
        complexed with dma, dpo, fq0, mg, po4
      6. 2919156Domain d7cavf_: 7cav F: [403111]
        Other proteins in same PDB: d7cava2, d7cavb2, d7cavg2
        automated match to d5hxpa_
        complexed with dma, dpo, fq0, mg, po4
      7. 2919157Domain d7cavg1: 7cav G:1-219 [403053]
        Other proteins in same PDB: d7cava2, d7cavb2, d7cavg2
        automated match to d5hxpa_
        complexed with dma, dpo, fq0, mg, po4
      8. 2919158Domain d7cavh_: 7cav H: [403039]
        Other proteins in same PDB: d7cava2, d7cavb2, d7cavg2
        automated match to d5hxpa_
        complexed with dma, dpo, fq0, mg, po4
    5. Domains for 7cc3:
      1. 2919141Domain d7cc3a1: 7cc3 A:1-214 [403162]
        Other proteins in same PDB: d7cc3a2, d7cc3b2, d7cc3h2
        automated match to d5hxpa_
        complexed with dpo, fq0, fqf, fv3, po4
      2. 2919142Domain d7cc3b1: 7cc3 B:1-219 [403211]
        Other proteins in same PDB: d7cc3a2, d7cc3b2, d7cc3h2
        automated match to d5hxpa_
        complexed with dpo, fq0, fqf, fv3, po4
      3. 2919143Domain d7cc3c_: 7cc3 C: [403187]
        Other proteins in same PDB: d7cc3a2, d7cc3b2, d7cc3h2
        automated match to d5hxpa_
        complexed with dpo, fq0, fqf, fv3, po4
      4. 2919144Domain d7cc3d_: 7cc3 D: [403192]
        Other proteins in same PDB: d7cc3a2, d7cc3b2, d7cc3h2
        automated match to d5hxpa_
        complexed with dpo, fq0, fqf, fv3, po4
      5. 2919145Domain d7cc3e_: 7cc3 E: [403193]
        Other proteins in same PDB: d7cc3a2, d7cc3b2, d7cc3h2
        automated match to d5hxpa_
        complexed with dpo, fq0, fqf, fv3, po4
      6. 2919146Domain d7cc3f_: 7cc3 F: [403223]
        Other proteins in same PDB: d7cc3a2, d7cc3b2, d7cc3h2
        automated match to d5hxpa_
        complexed with dpo, fq0, fqf, fv3, po4
      7. 2919147Domain d7cc3g_: 7cc3 G: [403176]
        Other proteins in same PDB: d7cc3a2, d7cc3b2, d7cc3h2
        automated match to d5hxpa_
        complexed with dpo, fq0, fqf, fv3, po4
      8. 2919148Domain d7cc3h1: 7cc3 H:1-219 [403198]
        Other proteins in same PDB: d7cc3a2, d7cc3b2, d7cc3h2
        automated match to d5hxpa_
        complexed with dpo, fq0, fqf, fv3, po4
  7. 2919163Mycobacterium tuberculosis [TaxId:1773] [188255] (3 PDB entries)
    1. Domains for 2vfw:
      1. 2919168Domain d2vfwa_: 2vfw A: [168522]
        automated match to d1f75a_
        complexed with so4
      2. 2919169Domain d2vfwb_: 2vfw B: [168523]
        automated match to d1f75a_
        complexed with so4
    2. Domains for 2vg0:
      1. 2919166Domain d2vg0a_: 2vg0 A: [168536]
        automated match to d1f75a_
        complexed with gol, gpp
      2. 2919167Domain d2vg0b_: 2vg0 B: [168537]
        automated match to d1f75a_
        complexed with gol, gpp
    3. Domains for 2vg1:
      1. 2919164Domain d2vg1a_: 2vg1 A: [168538]
        automated match to d1f75a_
        complexed with fpp, gol, po4
      2. 2919165Domain d2vg1b_: 2vg1 B: [168539]
        automated match to d1f75a_
        complexed with fpp, gol, po4
  8. 2919170Solanum habrochaites [TaxId:62890] [332525] (5 PDB entries)
    1. Domain for 5hxn:
    2. Domain for 5hxo:
    3. Domains for 5hxp:
      1. 2919173Domain d5hxpa_: 5hxp A: [332589]
        automated match to d4h8ea_
        complexed with ipr, mg, o4b; mutant
      2. 2919174Domain d5hxpc_: 5hxp C: [332570]
        automated match to d4h8ea_
        complexed with ipr, mg, o4b; mutant
    4. Domains for 5hxq:
      1. 2919171Domain d5hxqa_: 5hxq A: [332535]
        automated match to d4h8ea_
        complexed with dst, o4b; mutant
      2. 2919172Domain d5hxqc_: 5hxq C: [332537]
        automated match to d4h8ea_
        complexed with dst, o4b; mutant
    5. Domains for 5hxt:
      1. 2919177Domain d5hxta_: 5hxt A: [332571]
        automated match to d4h8ea_
        complexed with dst, ipr, mg, o4b; mutant
      2. 2919178Domain d5hxtb_: 5hxt B: [332527]
        automated match to d4h8ea_
        complexed with dst, ipr, mg, o4b; mutant
  9. 2919179Streptococcus pneumoniae [TaxId:170187] [319781] (2 PDB entries)
    1. Domains for 5kh2:
      1. 2919180Domain d5kh2a_: 5kh2 A: [319786]
        automated match to d4u82a_
      2. 2919181Domain d5kh2b_: 5kh2 B: [319813]
        automated match to d4u82a_
      3. 2919182Domain d5kh2c_: 5kh2 C: [319811]
        automated match to d4u82a_
      4. 2919183Domain d5kh2d_: 5kh2 D: [319836]
        automated match to d4u82a_
    2. Domains for 5kh5:
      1. 2919184Domain d5kh5a_: 5kh5 A: [319812]
        automated match to d4u82a_
        complexed with 6tc
      2. 2919185Domain d5kh5b_: 5kh5 B: [319782]
        automated match to d4u82a_
        complexed with 6tc
  10. 2919186Streptococcus pneumoniae [TaxId:171101] [260378] (2 PDB entries)
    1. Domains for 4q9m:
      1. 2919187Domain d4q9ma_: 4q9m A: [267278]
        automated match to d4q9oa_
        complexed with 2zw, cd, fpp
      2. 2919188Domain d4q9mb_: 4q9m B: [267279]
        automated match to d4q9oa_
        complexed with 2zw, cd, fpp
    2. Domains for 4q9o:
      1. 2919189Domain d4q9oa1: 4q9o A:10-246 [260379]
        Other proteins in same PDB: d4q9oa2
        automated match to d4h8ea_
        complexed with 2zw, so4
      2. 2919190Domain d4q9ob_: 4q9o B: [263660]
        Other proteins in same PDB: d4q9oa2
        automated match to d4q9oa_
        complexed with 2zw, so4
  11. 2919191Streptomyces sp. [TaxId:1136432] [348491] (5 PDB entries)
    1. Domains for 5xk3:
      1. 2919200Domain d5xk3a1: 5xk3 A:1-216 [348628]
        Other proteins in same PDB: d5xk3a2, d5xk3b2, d5xk3d2
        automated match to d5hxpa_
        complexed with so4
      2. 2919201Domain d5xk3b1: 5xk3 B:1-209 [348721]
        Other proteins in same PDB: d5xk3a2, d5xk3b2, d5xk3d2
        automated match to d5hxpa_
        complexed with so4
      3. 2919202Domain d5xk3c_: 5xk3 C: [348683]
        Other proteins in same PDB: d5xk3a2, d5xk3b2, d5xk3d2
        automated match to d5hxpa_
        complexed with so4
      4. 2919203Domain d5xk3d1: 5xk3 D:1-209 [348626]
        Other proteins in same PDB: d5xk3a2, d5xk3b2, d5xk3d2
        automated match to d5hxpa_
        complexed with so4
    2. Domains for 5xk6:
      1. 2919192Domain d5xk6a1: 5xk6 A:1-217 [348659]
        Other proteins in same PDB: d5xk6a2, d5xk6b2, d5xk6c2, d5xk6d2
        automated match to d5hxpa_
        complexed with mg, pop, so4
      2. 2919193Domain d5xk6b1: 5xk6 B:1-209 [348701]
        Other proteins in same PDB: d5xk6a2, d5xk6b2, d5xk6c2, d5xk6d2
        automated match to d5hxpa_
        complexed with mg, pop, so4
      3. 2919194Domain d5xk6c1: 5xk6 C:1-217 [348579]
        Other proteins in same PDB: d5xk6a2, d5xk6b2, d5xk6c2, d5xk6d2
        automated match to d5hxpa_
        complexed with mg, pop, so4
      4. 2919195Domain d5xk6d1: 5xk6 D:1-209 [348709]
        Other proteins in same PDB: d5xk6a2, d5xk6b2, d5xk6c2, d5xk6d2
        automated match to d5hxpa_
        complexed with mg, pop, so4
    3. Domains for 5xk7:
      1. 2919196Domain d5xk7a1: 5xk7 A:1-216 [348620]
        Other proteins in same PDB: d5xk7a2, d5xk7b2
        automated match to d5hxpa_
        complexed with dma, mes, mg, pop, so4
      2. 2919197Domain d5xk7b1: 5xk7 B:1-209 [348678]
        Other proteins in same PDB: d5xk7a2, d5xk7b2
        automated match to d5hxpa_
        complexed with dma, mes, mg, pop, so4
      3. 2919198Domain d5xk7c_: 5xk7 C: [348864]
        Other proteins in same PDB: d5xk7a2, d5xk7b2
        automated match to d5hxpa_
        complexed with dma, mes, mg, pop, so4
      4. 2919199Domain d5xk7d_: 5xk7 D: [348506]
        Other proteins in same PDB: d5xk7a2, d5xk7b2
        automated match to d5hxpa_
        complexed with dma, mes, mg, pop, so4
    4. Domains for 5xk8:
      1. 2919212Domain d5xk8a1: 5xk8 A:1-217 [348550]
        Other proteins in same PDB: d5xk8a2, d5xk8c2
        automated match to d5hxpa_
        complexed with gpp, mg
      2. 2919213Domain d5xk8b_: 5xk8 B: [348492]
        Other proteins in same PDB: d5xk8a2, d5xk8c2
        automated match to d5hxpa_
        complexed with gpp, mg
      3. 2919214Domain d5xk8c1: 5xk8 C:1-210 [348553]
        Other proteins in same PDB: d5xk8a2, d5xk8c2
        automated match to d5hxpa_
        complexed with gpp, mg
      4. 2919215Domain d5xk8d_: 5xk8 D: [348746]
        Other proteins in same PDB: d5xk8a2, d5xk8c2
        automated match to d5hxpa_
        complexed with gpp, mg
    5. Domains for 5xk9:
      1. 2919204Domain d5xk9a_: 5xk9 A: [348538]
        Other proteins in same PDB: d5xk9b2, d5xk9c2, d5xk9f2, d5xk9g2
        automated match to d5hxpa_
        complexed with dma, gst, mg
      2. 2919205Domain d5xk9b1: 5xk9 B:1-208 [348516]
        Other proteins in same PDB: d5xk9b2, d5xk9c2, d5xk9f2, d5xk9g2
        automated match to d5hxpa_
        complexed with dma, gst, mg
      3. 2919206Domain d5xk9c1: 5xk9 C:1-217 [348728]
        Other proteins in same PDB: d5xk9b2, d5xk9c2, d5xk9f2, d5xk9g2
        automated match to d5hxpa_
        complexed with dma, gst, mg
      4. 2919207Domain d5xk9d_: 5xk9 D: [348730]
        Other proteins in same PDB: d5xk9b2, d5xk9c2, d5xk9f2, d5xk9g2
        automated match to d5hxpa_
        complexed with dma, gst, mg
      5. 2919208Domain d5xk9e_: 5xk9 E: [348571]
        Other proteins in same PDB: d5xk9b2, d5xk9c2, d5xk9f2, d5xk9g2
        automated match to d5hxpa_
        complexed with dma, gst, mg
      6. 2919209Domain d5xk9f1: 5xk9 F:1-208 [348539]
        Other proteins in same PDB: d5xk9b2, d5xk9c2, d5xk9f2, d5xk9g2
        automated match to d5hxpa_
        complexed with dma, gst, mg
      7. 2919210Domain d5xk9g1: 5xk9 G:1-216 [348685]
        Other proteins in same PDB: d5xk9b2, d5xk9c2, d5xk9f2, d5xk9g2
        automated match to d5hxpa_
        complexed with dma, gst, mg
      8. 2919211Domain d5xk9h_: 5xk9 H: [348552]
        Other proteins in same PDB: d5xk9b2, d5xk9c2, d5xk9f2, d5xk9g2
        automated match to d5hxpa_
        complexed with dma, gst, mg
  12. 2919216Thermobifida fusca [TaxId:269800] [389984] (2 PDB entries)
    1. Domains for 7cpm:
      1. 2919223Domain d7cpma_: 7cpm A: [390075]
        automated match to d3wyia_
      2. 2919224Domain d7cpmb_: 7cpm B: [390010]
        automated match to d5hxpa_
      3. 2919225Domain d7cpmc_: 7cpm C: [390038]
        automated match to d5hxpa_
      4. 2919226Domain d7cpmd_: 7cpm D: [389985]
        automated match to d5hxpa_
      5. 2919227Domain d7cpme_: 7cpm E: [389986]
        automated match to d3wyia_
      6. 2919228Domain d7cpmf_: 7cpm F: [390020]
        automated match to d3wyia_
    2. Domains for 7cpn:
      1. 2919217Domain d7cpna_: 7cpn A: [390022]
        automated match to d5hxpa_
        complexed with gol, so4
      2. 2919218Domain d7cpnb_: 7cpn B: [389987]
        automated match to d5hxpa_
        complexed with gol, so4
      3. 2919219Domain d7cpnc_: 7cpn C: [390074]
        automated match to d5hxpa_
        complexed with gol, so4
      4. 2919220Domain d7cpnd_: 7cpn D: [390006]
        automated match to d5hxpa_
        complexed with gol, so4
      5. 2919221Domain d7cpne_: 7cpn E: [390013]
        automated match to d5hxpa_
        complexed with gol, so4
      6. 2919222Domain d7cpnf_: 7cpn F: [390008]
        automated match to d5hxpa_
        complexed with gol, so4
  13. 3086928Methanosarcina acetivorans [TaxId:188937] [423245] (1 PDB entry)

More info for Protein automated matches from c.101.1.0: automated matches

Timeline for Protein automated matches from c.101.1.0: automated matches: