SCOPe 2.04: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.04
Class d: Alpha and beta proteins (a+b) [53931] (380 folds)
Fold d.157: Metallo-hydrolase/oxidoreductase [56280] (1 superfamily)
duplication of beta(4)-alpha-beta-alpha motif; 4 layers a/b/b/a; mixed beta-sheets
Superfamily d.157.1: Metallo-hydrolase/oxidoreductase [56281] (15 families)
Family d.157.1.0: automated matches [191360] (1 protein)
not a true family
Protein automated matches [190418] (12 species)
not a true protein

Species:

Bradyrhizobium japonicum [TaxId:224911] [187297] (1 PDB entry)
- Domain for 2gmn:
  - Domain d2gmnb_: 2gmn B: [147133]
    Other proteins in same PDB: d2gmna1
    automated match to d1jt1a_
    complexed with zn
Chryseobacterium indologenes [TaxId:253] [189306] (1 PDB entry)
- Domain for 3l6n:
  - Domain d3l6na_: 3l6n A: [180005]
    automated match to d1m2xa_
    complexed with so4, zn
Escherichia coli [TaxId:562] [226145] (1 PDB entry)
- Domains for 3s0z:
  1. Domain d3s0za_: 3s0z A: [216140]
    automated match to d3rkka_
    complexed with zn
  2. Domain d3s0zb_: 3s0z B: [216141]
    automated match to d3rkka_
    complexed with zn
Escherichia coli [TaxId:83333] [259349] (1 PDB entry)
- Domain for 4d02:
  - Domain d4d02a1: 4d02 A:2-249 [259350]
    Other proteins in same PDB: d4d02a2
    automated match to d1ycga2
    complexed with cl, fe, fmn, gol, o, po4
Klebsiella pneumoniae [TaxId:573] [189718] (28 PDB entries)
1. Domain for 3pg4:
  - Domain d3pg4a_: 3pg4 A: [214764]
    automated match to d3sfpa_
2. Domains for 3q6x:
  1. Domain d3q6xa_: 3q6x A: [200288]
    automated match to d3q6xb_
    complexed with gol, zn, zz7
  2. Domain d3q6xb_: 3q6x B: [196349]
    automated match to d3srxa_
    complexed with gol, zn, zz7
3. Domains for 3rkj:
  1. Domain d3rkja_: 3rkj A: [193705]
    automated match to d3srxa_
    complexed with gol, so4
  2. Domain d3rkjb_: 3rkj B: [200485]
    automated match to d3rkja_
    complexed with gol, so4
4. Domains for 3rkk:
  1. Domain d3rkka_: 3rkk A: [185003]
    automated match to d1ko2a_
    complexed with acy, gol, so4
  2. Domain d3rkkb_: 3rkk B: [185004]
    automated match to d1ko2a_
    complexed with acy, gol, so4
5. Domain for 3sbl:
  - Domain d3sbla_: 3sbl A: [185350]
    automated match to d1ko2a_
    complexed with cit
6. Domains for 3sfp:
  1. Domain d3sfpa_: 3sfp A: [185370]
    automated match to d1ko2a_
    complexed with cit, cl, gol, so4, zn
  2. Domain d3sfpb_: 3sfp B: [191816]
    automated match to d3srxa_
    complexed with cit, cl, gol, so4, zn
  3. Domain d3sfpc_: 3sfp C: [191817]
    automated match to d3srxa_
    complexed with cit, cl, gol, so4, zn
  4. Domain d3sfpd_: 3sfp D: [185371]
    automated match to d1ko2a_
    complexed with cit, cl, gol, so4, zn
7. Domains for 3spu:
  1. Domain d3spua_: 3spu A: [233577]
    automated match to d3q6xb_
    complexed with zn
  2. Domain d3spub_: 3spu B: [239729]
    automated match to d3spua_
    complexed with zn
  3. Domain d3spuc_: 3spu C: [239730]
    automated match to d3spua_
    complexed with zn
  4. Domain d3spud_: 3spu D: [239731]
    automated match to d3spua_
    complexed with zn
  5. Domain d3spue_: 3spu E: [239732]
    automated match to d3spua_
    complexed with zn
8. Domains for 3srx:
  1. Domain d3srxa_: 3srx A: [185503]
    automated match to d1ko2a_
    complexed with cd, cl, gol, scn
  2. Domain d3srxb_: 3srx B: [185504]
    automated match to d1ko2a_
    complexed with cd, cl, gol, scn
9. Domain for 3zr9:
  - Domain d3zr9a_: 3zr9 A: [196335]
    automated match to d3srxa_
    complexed with cd, co, ni, zn
10. Domains for 4exs:
  1. Domain d4exsa_: 4exs A: [251815]
    automated match to d4ey2a_
    complexed with x8z, zn
  2. Domain d4exsb_: 4exs B: [251816]
    automated match to d4ey2a_
    complexed with x8z, zn
11. Domains for 4exy:
  1. Domain d4exya_: 4exy A: [251817]
    automated match to d4ey2a_
    complexed with edo, zn
  2. Domain d4exyb_: 4exy B: [251818]
    automated match to d4ey2a_
    complexed with edo, zn
12. Domains for 4ey2:
  1. Domain d4ey2a_: 4ey2 A: [234407]
    automated match to d3q6xb_
    complexed with 0rm, zn
  2. Domain d4ey2b_: 4ey2 B: [234408]
    automated match to d3q6xb_
    complexed with 0rm, zn
13. Domains for 4eyb:
  1. Domain d4eyba_: 4eyb A: [251819]
    automated match to d4ey2a_
    complexed with 0wo, zn
  2. Domain d4eybb_: 4eyb B: [251820]
    automated match to d4ey2a_
    complexed with 0wo, zn
14. Domains for 4eyf:
  1. Domain d4eyfa_: 4eyf A: [251821]
    automated match to d4ey2a_
    complexed with pnk, zn
  2. Domain d4eyfb_: 4eyf B: [251822]
    automated match to d4ey2a_
    complexed with pnk, zn
15. Domains for 4eyl:
  1. Domain d4eyla_: 4eyl A: [251823]
    automated match to d4ey2a_
    complexed with 0rv, zn
  2. Domain d4eylb_: 4eyl B: [251824]
    automated match to d4ey2a_
    complexed with 0rv, zn
16. Domains for 4gyq:
  1. Domain d4gyqa_: 4gyq A: [202311]
    automated match to d4gyqc_
    complexed with edo, mg; mutant
  2. Domain d4gyqb_: 4gyq B: [202312]
    automated match to d4gyqc_
    complexed with edo, mg; mutant
  3. Domain d4gyqc_: 4gyq C: [194621]
    automated match to d3srxa_
    complexed with edo, mg; mutant
  4. Domain d4gyqd_: 4gyq D: [202313]
    automated match to d4gyqc_
    complexed with edo, mg; mutant
17. Domain for 4gyu:
  - Domain d4gyua_: 4gyu A: [194622]
    automated match to d3srxa_
    complexed with gol, imd, p6g, peg; mutant
18. Domains for 4h0d:
  1. Domain d4h0da_: 4h0d A: [202322]
    automated match to d4hkyb_
    complexed with edo, fmt, gol, mn, na, so4, zz7
  2. Domain d4h0db_: 4h0d B: [194620]
    automated match to d3srxa_
    complexed with edo, fmt, gol, mn, na, so4, zz7
19. Domains for 4hky:
  1. Domain d4hkya_: 4hky A: [202445]
    automated match to d4hkyb_
    complexed with cd, cl, fpm, gol, sfr
  2. Domain d4hkyb_: 4hky B: [193278]
    automated match to d3srxa_
    complexed with cd, cl, fpm, gol, sfr
20. Domains for 4hl1:
  1. Domain d4hl1a_: 4hl1 A: [222652]
    automated match to d4hkyb_
    complexed with cd, cl, zz7
  2. Domain d4hl1b_: 4hl1 B: [222653]
    automated match to d4hkyb_
    complexed with cd, cl, zz7
21. Domains for 4hl2:
  1. Domain d4hl2a_: 4hl2 A: [222654]
    automated match to d4hkyb_
    complexed with edo, zn, zz7
  2. Domain d4hl2b_: 4hl2 B: [222655]
    automated match to d4hkyb_
    complexed with edo, zn, zz7
22. Domains for 4ram:
  1. Domain d4rama_: 4ram A: [260016]
    automated match to d4hl2a_
    complexed with cl, pnm, zn; mutant
  2. Domain d4ramb_: 4ram B: [260015]
    automated match to d4hl2a_
    complexed with cl, pnm, zn; mutant
23. Domain for 4raw:
  - Domain d4rawa_: 4raw A: [261268]
    automated match to d4hl2a_
    complexed with cd, edo, zz7; mutant
24. Domains for 4rbs:
  1. Domain d4rbsa_: 4rbs A: [261269]
    automated match to d4hl2a_
    complexed with 0rv, acy, gol, zn
  2. Domain d4rbsb_: 4rbs B: [261270]
    automated match to d4hl2a_
    complexed with 0rv, acy, gol, zn
25. Domain for 4rl0:
  - Domain d4rl0a_: 4rl0 A: [261150]
    automated match to d4ey2a_
    complexed with 3s0, zn
26. Domain for 4rl2:
  - Domain d4rl2b_: 4rl2 B: [261147]
    automated match to d4ey2a_
    complexed with 3s3, zn
27. Domains for 4rm5:
  1. Domain d4rm5b_: 4rm5 B: [261148]
    automated match to d4ey2a_
    complexed with zn
  2. Domain d4rm5c_: 4rm5 C: [261149]
    automated match to d4ey2a_
    complexed with zn
28. Domain for 4u4l:
  - Domain d4u4la_: 4u4l A: [259125]
    automated match to d4ey2a_
    complexed with 3c7, gol, zn
Methanothermobacter thermautotrophicus [TaxId:145262] [231016] (3 PDB entries)
1. Domains for 2ohh:
  1. Domain d2ohha1: 2ohh A:1-254 [231017]
    Other proteins in same PDB: d2ohha2, d2ohhb2, d2ohhe2
    automated match to d1ycfa2
    complexed with fe, fmn, so4
  2. Domain d2ohhb1: 2ohh B:1-254 [231019]
    Other proteins in same PDB: d2ohha2, d2ohhb2, d2ohhe2
    automated match to d1ycfa2
    complexed with fe, fmn, so4
  3. Domain d2ohhd1: 2ohh D:1-254 [231018]
    Other proteins in same PDB: d2ohha2, d2ohhb2, d2ohhe2
    automated match to d1ycfa2
    complexed with fe, fmn, so4
  4. Domain d2ohhe1: 2ohh E:1-254 [231020]
    Other proteins in same PDB: d2ohha2, d2ohhb2, d2ohhe2
    automated match to d1ycfa2
    complexed with fe, fmn, so4
2. Domains for 2ohi:
  1. Domain d2ohia1: 2ohi A:1-254 [231021]
    Other proteins in same PDB: d2ohia2, d2ohib2, d2ohid2, d2ohie2, d2ohig2, d2ohih2, d2ohii2, d2ohij2
    automated match to d1ycfa2
    complexed with cl, fe, fmn
  2. Domain d2ohib1: 2ohi B:1-254 [231023]
    Other proteins in same PDB: d2ohia2, d2ohib2, d2ohid2, d2ohie2, d2ohig2, d2ohih2, d2ohii2, d2ohij2
    automated match to d1ycfa2
    complexed with cl, fe, fmn
  3. Domain d2ohid1: 2ohi D:1-254 [231022]
    Other proteins in same PDB: d2ohia2, d2ohib2, d2ohid2, d2ohie2, d2ohig2, d2ohih2, d2ohii2, d2ohij2
    automated match to d1ycfa2
    complexed with cl, fe, fmn
  4. Domain d2ohie1: 2ohi E:1-254 [231024]
    Other proteins in same PDB: d2ohia2, d2ohib2, d2ohid2, d2ohie2, d2ohig2, d2ohih2, d2ohii2, d2ohij2
    automated match to d1ycfa2
    complexed with cl, fe, fmn
  5. Domain d2ohig1: 2ohi G:1-254 [231025]
    Other proteins in same PDB: d2ohia2, d2ohib2, d2ohid2, d2ohie2, d2ohig2, d2ohih2, d2ohii2, d2ohij2
    automated match to d1ycfa2
    complexed with cl, fe, fmn
  6. Domain d2ohih1: 2ohi H:1-254 [231026]
    Other proteins in same PDB: d2ohia2, d2ohib2, d2ohid2, d2ohie2, d2ohig2, d2ohih2, d2ohii2, d2ohij2
    automated match to d1ycfa2
    complexed with cl, fe, fmn
  7. Domain d2ohii1: 2ohi I:1-254 [231027]
    Other proteins in same PDB: d2ohia2, d2ohib2, d2ohid2, d2ohie2, d2ohig2, d2ohih2, d2ohii2, d2ohij2
    automated match to d1ycfa2
    complexed with cl, fe, fmn
  8. Domain d2ohij1: 2ohi J:1-254 [231030]
    Other proteins in same PDB: d2ohia2, d2ohib2, d2ohid2, d2ohie2, d2ohig2, d2ohih2, d2ohii2, d2ohij2
    automated match to d1ycfa2
    complexed with cl, fe, fmn
3. Domains for 2ohj:
  1. Domain d2ohja1: 2ohj A:1-254 [231029]
    Other proteins in same PDB: d2ohja2, d2ohjb2, d2ohjd2, d2ohje2
    automated match to d1ycfa2
    complexed with cl, fe, fmn
  2. Domain d2ohjb1: 2ohj B:1-254 [231028]
    Other proteins in same PDB: d2ohja2, d2ohjb2, d2ohjd2, d2ohje2
    automated match to d1ycfa2
    complexed with cl, fe, fmn
  3. Domain d2ohjd1: 2ohj D:1-254 [231031]
    Other proteins in same PDB: d2ohja2, d2ohjb2, d2ohjd2, d2ohje2
    automated match to d1ycfa2
    complexed with cl, fe, fmn
  4. Domain d2ohje1: 2ohj E:1-254 [231032]
    Other proteins in same PDB: d2ohja2, d2ohjb2, d2ohjd2, d2ohje2
    automated match to d1ycfa2
    complexed with cl, fe, fmn
Pseudomonas aeruginosa [TaxId:287] [187706] (10 PDB entries)
1. Domains for 2fhx:
  1. Domain d2fhxa_: 2fhx A: [164393]
    automated match to d1ddka_
    complexed with azi, cl, edo, zn
  2. Domain d2fhxb_: 2fhx B: [164394]
    automated match to d1ddka_
    complexed with azi, cl, edo, zn
2. Domains for 2ynt:
  1. Domain d2ynta_: 2ynt A: [207681]
    automated match to d1jjeb_
    complexed with gol, zn
  2. Domain d2yntb_: 2ynt B: [207682]
    automated match to d1jjeb_
    complexed with gol, zn
  3. Domain d2yntc_: 2ynt C: [207683]
    automated match to d1jjeb_
    complexed with gol, zn
3. Domains for 2ynu:
  1. Domain d2ynua_: 2ynu A: [207684]
    automated match to d1jjeb_
  2. Domain d2ynub_: 2ynu B: [207685]
    automated match to d1jjeb_
4. Domains for 2ynv:
  1. Domain d2ynva_: 2ynv A: [207686]
    automated match to d1jjeb_
    complexed with mg, zn
  2. Domain d2ynvb_: 2ynv B: [207687]
    automated match to d1jjeb_
    complexed with mg, zn
5. Domains for 2ynw:
  1. Domain d2ynwa_: 2ynw A: [207688]
    automated match to d1jjeb_
    complexed with gol, so4, zn
  2. Domain d2ynwb_: 2ynw B: [207689]
    automated match to d1jjeb_
    complexed with gol, so4, zn
6. Domain for 4awy:
  - Domain d4awyb_: 4awy B: [251159]
    automated match to d2fu9a_
    complexed with ca, mg, zn
7. Domains for 4awz:
  1. Domain d4awza_: 4awz A: [251160]
    automated match to d2fu9a_
    complexed with ca, mg, zn
  2. Domain d4awzb_: 4awz B: [251161]
    automated match to d2fu9a_
    complexed with ca, mg, zn
  3. Domain d4awzc_: 4awz C: [251162]
    automated match to d2fu9a_
    complexed with ca, mg, zn
8. Domain for 4ax0:
  - Domain d4ax0b_: 4ax0 B: [251163]
    automated match to d2fu9a_
    complexed with act, ca, zn; mutant
9. Domain for 4ax1:
  - Domain d4ax1b_: 4ax1 B: [251164]
    automated match to d2fu9a_
    complexed with act, ca, mg, zn; mutant
10. Domain for 4bp0:
  - Domain d4bp0a_: 4bp0 A: [256568]
    automated match to d2fhxa_
    complexed with cl, gol, zn
Pseudomonas oleovorans [TaxId:301] [261363] (1 PDB entry)
- Domain for 4o98:
  - Domain d4o98a_: 4o98 A: [261364]
    automated match to d4le6a_
    complexed with zn; mutant
Pseudomonas pseudoalcaligenes [TaxId:330] [256354] (1 PDB entry)
- Domains for 4le6:
  1. Domain d4le6a_: 4le6 A: [253570]
    automated match to d1p9ea_
    complexed with edo, gol, pge, zn
  2. Domain d4le6b_: 4le6 B: [253571]
    automated match to d1p9ea_
    complexed with edo, gol, pge, zn
  3. Domain d4le6c_: 4le6 C: [253572]
    automated match to d1p9ea_
    complexed with edo, gol, pge, zn
  4. Domain d4le6d_: 4le6 D: [253573]
    automated match to d1p9ea_
    complexed with edo, gol, pge, zn
  5. Domain d4le6e_: 4le6 E: [253574]
    automated match to d1p9ea_
    complexed with edo, gol, pge, zn
Pseudomonas sp. [TaxId:1007495] [226382] (3 PDB entries)
1. Domains for 2yhe:
  1. Domain d2yhea1: 2yhe A:30-538 [207591]
    Other proteins in same PDB: d2yhea2, d2yheb2, d2yhec2, d2yhed2, d2yhee2, d2yhef2
    automated match to d2cfua2
    complexed with so4, zn
  2. Domain d2yheb1: 2yhe B:30-538 [207593]
    Other proteins in same PDB: d2yhea2, d2yheb2, d2yhec2, d2yhed2, d2yhee2, d2yhef2
    automated match to d2cfua2
    complexed with so4, zn
  3. Domain d2yhec1: 2yhe C:30-538 [207595]
    Other proteins in same PDB: d2yhea2, d2yheb2, d2yhec2, d2yhed2, d2yhee2, d2yhef2
    automated match to d2cfua2
    complexed with so4, zn
  4. Domain d2yhed1: 2yhe D:30-538 [207597]
    Other proteins in same PDB: d2yhea2, d2yheb2, d2yhec2, d2yhed2, d2yhee2, d2yhef2
    automated match to d2cfua2
    complexed with so4, zn
  5. Domain d2yhee1: 2yhe E:30-538 [207599]
    Other proteins in same PDB: d2yhea2, d2yheb2, d2yhec2, d2yhed2, d2yhee2, d2yhef2
    automated match to d2cfua2
    complexed with so4, zn
  6. Domain d2yhef1: 2yhe F:30-538 [207601]
    Other proteins in same PDB: d2yhea2, d2yheb2, d2yhec2, d2yhed2, d2yhee2, d2yhef2
    automated match to d2cfua2
    complexed with so4, zn
2. Domains for 4av7:
  1. Domain d4av7a1: 4av7 A:30-538 [251147]
    Other proteins in same PDB: d4av7a2, d4av7b2, d4av7c2, d4av7d2, d4av7e2, d4av7f2
    automated match to d2yhea1
    complexed with so4, zn; mutant
  2. Domain d4av7b1: 4av7 B:30-538 [251149]
    Other proteins in same PDB: d4av7a2, d4av7b2, d4av7c2, d4av7d2, d4av7e2, d4av7f2
    automated match to d2yhea1
    complexed with so4, zn; mutant
  3. Domain d4av7c1: 4av7 C:30-538 [251151]
    Other proteins in same PDB: d4av7a2, d4av7b2, d4av7c2, d4av7d2, d4av7e2, d4av7f2
    automated match to d2yhea1
    complexed with so4, zn; mutant
  4. Domain d4av7d1: 4av7 D:30-538 [251153]
    Other proteins in same PDB: d4av7a2, d4av7b2, d4av7c2, d4av7d2, d4av7e2, d4av7f2
    automated match to d2yhea1
    complexed with so4, zn; mutant
  5. Domain d4av7e1: 4av7 E:30-538 [251155]
    Other proteins in same PDB: d4av7a2, d4av7b2, d4av7c2, d4av7d2, d4av7e2, d4av7f2
    automated match to d2yhea1
    complexed with so4, zn; mutant
  6. Domain d4av7f1: 4av7 F:30-538 [251157]
    Other proteins in same PDB: d4av7a2, d4av7b2, d4av7c2, d4av7d2, d4av7e2, d4av7f2
    automated match to d2yhea1
    complexed with so4, zn; mutant
3. Domains for 4axh:
  1. Domain d4axha1: 4axh A:30-538 [219191]
    Other proteins in same PDB: d4axha2, d4axhb2
    automated match to d2cfua2
    complexed with so4, zn
  2. Domain d4axhb1: 4axh B:32-538 [219193]
    Other proteins in same PDB: d4axha2, d4axhb2
    automated match to d2cfua2
    complexed with so4, zn
Pseudomonas stutzeri [TaxId:316] [259737] (1 PDB entry)
- Domain for 4wd6:
  - Domain d4wd6a_: 4wd6 A: [259738]
    automated match to d1jjtb_
    complexed with zn
Serratia marcescens [TaxId:615] [193993] (2 PDB entries)
1. Domain for 3vpe:
  - Domain d3vpea_: 3vpe A: [193994]
    automated match to d2gmna1
    complexed with act, gol, so4, zn
2. Domain for 3vqz:
  - Domain d3vqza_: 3vqz A: [193995]
    automated match to d2gmna1
    complexed with mcr, na, zn

More info for Protein automated matches from d.157.1.0: automated matches

Timeline for Protein automated matches from d.157.1.0: automated matches:

Protein automated matches from d.157.1.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from d.157.1.0: automated matches appears in SCOPe 2.03
Protein automated matches from d.157.1.0: automated matches appears in SCOPe 2.05
Protein automated matches from d.157.1.0: automated matches appears in the current release, SCOPe 2.08