Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1396887Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1440053Fold d.157: Metallo-hydrolase/oxidoreductase [56280] (1 superfamily)
    duplication of beta(4)-alpha-beta-alpha motif; 4 layers a/b/b/a; mixed beta-sheets
  4. 1440054Superfamily d.157.1: Metallo-hydrolase/oxidoreductase [56281] (15 families) (S)
  5. 1440394Family d.157.1.0: automated matches [191360] (1 protein)
    not a true family
  6. 1440395Protein automated matches [190418] (8 species)
    not a true protein

Species:

  1. 1440396Bradyrhizobium japonicum [TaxId:224911] [187297] (1 PDB entry)
  2. 1440398Chryseobacterium indologenes [TaxId:253] [189306] (1 PDB entry)
  3. 1440400Escherichia coli [TaxId:562] [226145] (1 PDB entry)
  4. 1440403Klebsiella pneumoniae [TaxId:573] [189718] (16 PDB entries)
    1. Domain for 3pg4:
    2. Domains for 3q6x:
      1. 1440408Domain d3q6xa_: 3q6x A: [200288]
        automated match to d3q6xb_
        complexed with gol, zn, zz7
      2. 1440409Domain d3q6xb_: 3q6x B: [196349]
        automated match to d3srxa_
        complexed with gol, zn, zz7
    3. Domains for 3rkj:
      1. 1440421Domain d3rkja_: 3rkj A: [193705]
        automated match to d3srxa_
        complexed with gol, so4
      2. 1440422Domain d3rkjb_: 3rkj B: [200485]
        automated match to d3rkja_
        complexed with gol, so4
    4. Domains for 3rkk:
      1. 1440433Domain d3rkka_: 3rkk A: [185003]
        automated match to d1ko2a_
        complexed with acy, gol, so4
      2. 1440434Domain d3rkkb_: 3rkk B: [185004]
        automated match to d1ko2a_
        complexed with acy, gol, so4
    5. Domain for 3sbl:
    6. Domains for 3sfp:
      1. 1440426Domain d3sfpa_: 3sfp A: [185370]
        automated match to d1ko2a_
        complexed with cit, cl, gol, so4, zn
      2. 1440427Domain d3sfpb_: 3sfp B: [191816]
        automated match to d3srxa_
        complexed with cit, cl, gol, so4, zn
      3. 1440428Domain d3sfpc_: 3sfp C: [191817]
        automated match to d3srxa_
        complexed with cit, cl, gol, so4, zn
      4. 1440429Domain d3sfpd_: 3sfp D: [185371]
        automated match to d1ko2a_
        complexed with cit, cl, gol, so4, zn
    7. Domain for 3spu:
    8. Domains for 3srx:
      1. 1440431Domain d3srxa_: 3srx A: [185503]
        automated match to d1ko2a_
        complexed with cd, cl, gol, scn
      2. 1440432Domain d3srxb_: 3srx B: [185504]
        automated match to d1ko2a_
        complexed with cd, cl, gol, scn
    9. Domain for 3zr9:
    10. Domains for 4ey2:
      1. 1440406Domain d4ey2a_: 4ey2 A: [234407]
        automated match to d3q6xb_
        complexed with 0rm, zn
      2. 1440407Domain d4ey2b_: 4ey2 B: [234408]
        automated match to d3q6xb_
        complexed with 0rm, zn
    11. Domains for 4gyq:
      1. 1440410Domain d4gyqa_: 4gyq A: [202311]
        automated match to d4gyqc_
        complexed with edo, mg; mutant
      2. 1440411Domain d4gyqb_: 4gyq B: [202312]
        automated match to d4gyqc_
        complexed with edo, mg; mutant
      3. 1440412Domain d4gyqc_: 4gyq C: [194621]
        automated match to d3srxa_
        complexed with edo, mg; mutant
      4. 1440413Domain d4gyqd_: 4gyq D: [202313]
        automated match to d4gyqc_
        complexed with edo, mg; mutant
    12. Domain for 4gyu:
    13. Domains for 4h0d:
      1. 1440414Domain d4h0da_: 4h0d A: [202322]
        automated match to d4hkyb_
        complexed with edo, fmt, gol, mn, na, so4, zz7
      2. 1440415Domain d4h0db_: 4h0d B: [194620]
        automated match to d3srxa_
        complexed with edo, fmt, gol, mn, na, so4, zz7
    14. Domains for 4hky:
      1. 1440423Domain d4hkya_: 4hky A: [202445]
        automated match to d4hkyb_
        complexed with cd, cl, fpm, gol, sfr
      2. 1440424Domain d4hkyb_: 4hky B: [193278]
        automated match to d3srxa_
        complexed with cd, cl, fpm, gol, sfr
    15. Domains for 4hl1:
      1. 1440416Domain d4hl1a_: 4hl1 A: [222652]
        automated match to d4hkyb_
        complexed with cd, cl, zz7
      2. 1440417Domain d4hl1b_: 4hl1 B: [222653]
        automated match to d4hkyb_
        complexed with cd, cl, zz7
    16. Domains for 4hl2:
      1. 1440404Domain d4hl2a_: 4hl2 A: [222654]
        automated match to d4hkyb_
        complexed with edo, zn, zz7
      2. 1440405Domain d4hl2b_: 4hl2 B: [222655]
        automated match to d4hkyb_
        complexed with edo, zn, zz7
  5. 1440435Methanothermobacter thermautotrophicus [TaxId:145262] [231016] (3 PDB entries)
    1. Domains for 2ohh:
      1. 1440436Domain d2ohha1: 2ohh A:1-254 [231017]
        Other proteins in same PDB: d2ohha2, d2ohhb2, d2ohhe2
        automated match to d1ycfa2
        complexed with fe, fmn, so4
      2. 1440437Domain d2ohhb1: 2ohh B:1-254 [231019]
        Other proteins in same PDB: d2ohha2, d2ohhb2, d2ohhe2
        automated match to d1ycfa2
        complexed with fe, fmn, so4
      3. 1440438Domain d2ohhd1: 2ohh D:1-254 [231018]
        Other proteins in same PDB: d2ohha2, d2ohhb2, d2ohhe2
        automated match to d1ycfa2
      4. 1440439Domain d2ohhe1: 2ohh E:1-254 [231020]
        Other proteins in same PDB: d2ohha2, d2ohhb2, d2ohhe2
        automated match to d1ycfa2
        complexed with fe, fmn, so4
    2. Domains for 2ohi:
      1. 1440444Domain d2ohia1: 2ohi A:1-254 [231021]
        Other proteins in same PDB: d2ohia2, d2ohib2, d2ohid2, d2ohie2, d2ohig2, d2ohih2, d2ohii2, d2ohij2
        automated match to d1ycfa2
        complexed with cl, fe, fmn
      2. 1440445Domain d2ohib1: 2ohi B:1-254 [231023]
        Other proteins in same PDB: d2ohia2, d2ohib2, d2ohid2, d2ohie2, d2ohig2, d2ohih2, d2ohii2, d2ohij2
        automated match to d1ycfa2
        complexed with cl, fe, fmn
      3. 1440446Domain d2ohid1: 2ohi D:1-254 [231022]
        Other proteins in same PDB: d2ohia2, d2ohib2, d2ohid2, d2ohie2, d2ohig2, d2ohih2, d2ohii2, d2ohij2
        automated match to d1ycfa2
        complexed with cl, fe, fmn
      4. 1440447Domain d2ohie1: 2ohi E:1-254 [231024]
        Other proteins in same PDB: d2ohia2, d2ohib2, d2ohid2, d2ohie2, d2ohig2, d2ohih2, d2ohii2, d2ohij2
        automated match to d1ycfa2
        complexed with cl, fe, fmn
      5. 1440448Domain d2ohig1: 2ohi G:1-254 [231025]
        Other proteins in same PDB: d2ohia2, d2ohib2, d2ohid2, d2ohie2, d2ohig2, d2ohih2, d2ohii2, d2ohij2
        automated match to d1ycfa2
        complexed with cl, fe, fmn
      6. 1440449Domain d2ohih1: 2ohi H:1-254 [231026]
        Other proteins in same PDB: d2ohia2, d2ohib2, d2ohid2, d2ohie2, d2ohig2, d2ohih2, d2ohii2, d2ohij2
        automated match to d1ycfa2
        complexed with cl, fe, fmn
      7. 1440450Domain d2ohii1: 2ohi I:1-254 [231027]
        Other proteins in same PDB: d2ohia2, d2ohib2, d2ohid2, d2ohie2, d2ohig2, d2ohih2, d2ohii2, d2ohij2
        automated match to d1ycfa2
        complexed with cl, fe, fmn
      8. 1440451Domain d2ohij1: 2ohi J:1-254 [231030]
        Other proteins in same PDB: d2ohia2, d2ohib2, d2ohid2, d2ohie2, d2ohig2, d2ohih2, d2ohii2, d2ohij2
        automated match to d1ycfa2
        complexed with cl, fe, fmn
    3. Domains for 2ohj:
      1. 1440440Domain d2ohja1: 2ohj A:1-254 [231029]
        Other proteins in same PDB: d2ohja2, d2ohjb2, d2ohjd2, d2ohje2
        automated match to d1ycfa2
        complexed with cl, fe, fmn
      2. 1440441Domain d2ohjb1: 2ohj B:1-254 [231028]
        Other proteins in same PDB: d2ohja2, d2ohjb2, d2ohjd2, d2ohje2
        automated match to d1ycfa2
        complexed with cl, fe, fmn
      3. 1440442Domain d2ohjd1: 2ohj D:1-254 [231031]
        Other proteins in same PDB: d2ohja2, d2ohjb2, d2ohjd2, d2ohje2
        automated match to d1ycfa2
        complexed with cl, fe, fmn
      4. 1440443Domain d2ohje1: 2ohj E:1-254 [231032]
        Other proteins in same PDB: d2ohja2, d2ohjb2, d2ohjd2, d2ohje2
        automated match to d1ycfa2
        complexed with cl, fe, fmn
  6. 1440452Pseudomonas aeruginosa [TaxId:287] [187706] (5 PDB entries)
    1. Domains for 2fhx:
      1. 1440458Domain d2fhxa_: 2fhx A: [164393]
        automated match to d1ddka_
        complexed with azi, cl, edo, zn
      2. 1440459Domain d2fhxb_: 2fhx B: [164394]
        automated match to d1ddka_
        complexed with azi, cl, edo, zn
    2. Domains for 2ynt:
      1. 1440453Domain d2ynta_: 2ynt A: [207681]
        automated match to d1jjeb_
        complexed with gol, zn
      2. 1440454Domain d2yntb_: 2ynt B: [207682]
        automated match to d1jjeb_
        complexed with gol, zn
      3. 1440455Domain d2yntc_: 2ynt C: [207683]
        automated match to d1jjeb_
        complexed with gol, zn
    3. Domains for 2ynu:
      1. 1440460Domain d2ynua_: 2ynu A: [207684]
        automated match to d1jjeb_
      2. 1440461Domain d2ynub_: 2ynu B: [207685]
        automated match to d1jjeb_
    4. Domains for 2ynv:
      1. 1440462Domain d2ynva_: 2ynv A: [207686]
        automated match to d1jjeb_
        complexed with mg, zn
      2. 1440463Domain d2ynvb_: 2ynv B: [207687]
        automated match to d1jjeb_
        complexed with mg, zn
    5. Domains for 2ynw:
      1. 1440456Domain d2ynwa_: 2ynw A: [207688]
        automated match to d1jjeb_
        complexed with gol, so4, zn
      2. 1440457Domain d2ynwb_: 2ynw B: [207689]
        automated match to d1jjeb_
        complexed with gol, so4, zn
  7. 1440464Pseudomonas sp. [TaxId:1007495] [226382] (2 PDB entries)
    1. Domains for 2yhe:
      1. 1440465Domain d2yhea1: 2yhe A:30-538 [207591]
        Other proteins in same PDB: d2yhea2, d2yheb2, d2yhec2, d2yhed2, d2yhee2, d2yhef2
        automated match to d2cfua2
        complexed with so4, zn
      2. 1440466Domain d2yheb1: 2yhe B:30-538 [207593]
        Other proteins in same PDB: d2yhea2, d2yheb2, d2yhec2, d2yhed2, d2yhee2, d2yhef2
        automated match to d2cfua2
        complexed with so4, zn
      3. 1440467Domain d2yhec1: 2yhe C:30-538 [207595]
        Other proteins in same PDB: d2yhea2, d2yheb2, d2yhec2, d2yhed2, d2yhee2, d2yhef2
        automated match to d2cfua2
        complexed with so4, zn
      4. 1440468Domain d2yhed1: 2yhe D:30-538 [207597]
        Other proteins in same PDB: d2yhea2, d2yheb2, d2yhec2, d2yhed2, d2yhee2, d2yhef2
        automated match to d2cfua2
        complexed with so4, zn
      5. 1440469Domain d2yhee1: 2yhe E:30-538 [207599]
        Other proteins in same PDB: d2yhea2, d2yheb2, d2yhec2, d2yhed2, d2yhee2, d2yhef2
        automated match to d2cfua2
        complexed with so4, zn
      6. 1440470Domain d2yhef1: 2yhe F:30-538 [207601]
        Other proteins in same PDB: d2yhea2, d2yheb2, d2yhec2, d2yhed2, d2yhee2, d2yhef2
        automated match to d2cfua2
        complexed with so4, zn
    2. Domains for 4axh:
      1. 1440471Domain d4axha1: 4axh A:30-538 [219191]
        Other proteins in same PDB: d4axha2, d4axhb2
        automated match to d2cfua2
        complexed with so4, zn
      2. 1440472Domain d4axhb1: 4axh B:32-538 [219193]
        Other proteins in same PDB: d4axha2, d4axhb2
        automated match to d2cfua2
        complexed with so4, zn
  8. 1440473Serratia marcescens [TaxId:615] [193993] (2 PDB entries)
    1. Domain for 3vpe:
    2. Domain for 3vqz:

More info for Protein automated matches from d.157.1.0: automated matches

Timeline for Protein automated matches from d.157.1.0: automated matches: