Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2530962Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2578543Fold d.115: YrdC/RibB [55820] (1 superfamily)
    core: alpha-beta(2)-alpha-beta-alpha(2)-beta(2)-alpha-beta-alpha-beta; 3 layers; mixed twisted sheet of 7 strands; order 7126354; strands 7 and 1 are parallel to each other
  4. 2578544Superfamily d.115.1: YrdC/RibB [55821] (3 families) (S)
  5. 2578559Family d.115.1.2: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB [64372] (2 proteins)
    contains one additional helix in the C-terminal extension
    automatically mapped to Pfam PF00926
  6. 2578586Protein automated matches [190415] (4 species)
    not a true protein

Species:

  1. 2578587Salmonella typhimurium [TaxId:90371] [189463] (3 PDB entries)
    1. Domains for 3lqu:
      1. 2578590Domain d3lqua_: 3lqu A: [180517]
        automated match to d1ieza_
        complexed with 5sp
      2. 2578591Domain d3lqub_: 3lqu B: [180518]
        automated match to d1ieza_
        complexed with 5sp
    2. Domains for 3lrj:
      1. 2578592Domain d3lrja_: 3lrj A: [180528]
        automated match to d1ieza_
        complexed with so4
      2. 2578593Domain d3lrjb_: 3lrj B: [180529]
        automated match to d1ieza_
        complexed with so4
      3. 2578594Domain d3lrjc_: 3lrj C: [180530]
        automated match to d1ieza_
        complexed with so4
      4. 2578595Domain d3lrjd_: 3lrj D: [180531]
        automated match to d1ieza_
        complexed with so4
    3. Domains for 3ls6:
      1. 2578588Domain d3ls6a_: 3ls6 A: [180537]
        automated match to d1ieza_
        complexed with gol, mg, so4, zn
      2. 2578589Domain d3ls6b_: 3ls6 B: [180538]
        automated match to d1ieza_
        complexed with gol, mg, so4, zn
  2. 2578596Vibrio cholerae [TaxId:243277] [270331] (6 PDB entries)
    1. Domains for 4p6c:
      1. 2578601Domain d4p6ca_: 4p6c A: [270335]
        automated match to d1ieza_
        complexed with res
      2. 2578602Domain d4p6cb_: 4p6c B: [270337]
        automated match to d1ieza_
        complexed with res
    2. Domains for 4p6d:
      1. 2578597Domain d4p6da_: 4p6d A: [270336]
        automated match to d1ieza_
        complexed with edo, po4
      2. 2578598Domain d4p6db_: 4p6d B: [270334]
        automated match to d1ieza_
        complexed with edo, po4
    3. Domains for 4p6p:
      1. 2578599Domain d4p6pa_: 4p6p A: [270332]
        Other proteins in same PDB: d4p6pb2
        automated match to d1ieza_
        complexed with res, zn
      2. 2578600Domain d4p6pb1: 4p6p B:1-216 [270333]
        Other proteins in same PDB: d4p6pb2
        automated match to d1ieza_
        complexed with res, zn
    4. Domains for 4p77:
      1. 2578607Domain d4p77a_: 4p77 A: [270338]
        automated match to d1ieza_
        complexed with 5rp, gol
      2. 2578608Domain d4p77b_: 4p77 B: [270339]
        automated match to d1ieza_
        complexed with 5rp, gol
    5. Domains for 4p8e:
      1. 2578605Domain d4p8ea_: 4p8e A: [270343]
        Other proteins in same PDB: d4p8eb2
        automated match to d1ieza_
        complexed with 5rp, edo, zn
      2. 2578606Domain d4p8eb1: 4p8e B:1-215 [270342]
        Other proteins in same PDB: d4p8eb2
        automated match to d1ieza_
        complexed with 5rp, edo, zn
    6. Domains for 4p8j:
      1. 2578603Domain d4p8ja_: 4p8j A: [270341]
        automated match to d1ieza_
        complexed with gol
      2. 2578604Domain d4p8jb_: 4p8j B: [270340]
        automated match to d1ieza_
        complexed with gol
  3. 2578609Yeast (Candida albicans) [TaxId:5476] [187291] (2 PDB entries)
    1. Domain for 2ris:
    2. Domain for 2riu:
  4. 2578612Yersinia pestis [TaxId:214092] [188881] (1 PDB entry)

More info for Protein automated matches from d.115.1.2: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB

Timeline for Protein automated matches from d.115.1.2: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB: