Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. Fold d.110: Profilin-like [55769] (10 superfamilies)
    core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha
  4. Superfamily d.110.7: Roadblock/LC7 domain [103196] (2 families) (S)
    alpha-beta(2)-alpha-beta(3)-alpha; structurally most similar to the SNARE-like superfamily with a circular permutation of the terminal helices
  5. Family d.110.7.1: Roadblock/LC7 domain [103197] (5 proteins)
    Pfam PF03259
  6. Protein automated matches [190414] (3 species)
    not a true protein

Species:

  1. Fruit fly (Drosophila melanogaster) [TaxId:7227] [189327] (2 PDB entries)
    1. Domains for 3l7h:
      1. Domain d3l7ha_: 3l7h A: [180048]
        automated match to d1z09a1
      2. Domain d3l7hb_: 3l7h B: [180049]
        automated match to d1z09a1
      3. Domain d3l7hc_: 3l7h C: [180050]
        automated match to d1z09a1
      4. Domain d3l7hd_: 3l7h D: [180051]
        automated match to d1z09a1
    2. Domains for 3l9k:
      1. Domain d3l9ka_: 3l9k A: [247427]
        automated match to d3l7hb_
      2. Domain d3l9kb_: 3l9k B: [247428]
        automated match to d3l7hb_
      3. Domain d3l9kc_: 3l9k C: [247429]
        automated match to d3l7hb_
      4. Domain d3l9kd_: 3l9k D: [247430]
        automated match to d3l7hb_
  2. Human (Homo sapiens) [TaxId:9606] [187290] (12 PDB entries)
    1. Domain for 2b95:
    2. Domains for 2e8j:
      1. Domain d2e8ja_: 2e8j A: [146726]
        automated match to d2b95a1
      2. Domain d2e8jb_: 2e8j B: [146727]
        automated match to d2b95a1
    3. Domains for 2hz5:
      1. Domain d2hz5a_: 2hz5 A: [147460]
        automated match to d1tgqa_
        complexed with cs
      2. Domain d2hz5b_: 2hz5 B: [147461]
        automated match to d1tgqa_
        complexed with cs
    4. Domains for 5x6u:
      1. Domain d5x6ua1: 5x6u A:2-123 [342528]
        Other proteins in same PDB: d5x6ua2
        automated match to d1veta_
      2. Domain d5x6ub_: 5x6u B: [342532]
        Other proteins in same PDB: d5x6ua2
        automated match to d1szva_
    5. Domains for 5x6v:
      1. Domain d5x6va_: 5x6v A: [342568]
        automated match to d1veta_
        complexed with act, na
      2. Domain d5x6vb_: 5x6v B: [342544]
        automated match to d1szva_
        complexed with act, na
    6. Domains for 5y39:
      1. Domain d5y39b_: 5y39 B: [342625]
        automated match to d1szva_
      2. Domain d5y39c_: 5y39 C: [342638]
        automated match to d1veta_
      3. Domain d5y39g_: 5y39 G: [342613]
        automated match to d1szva_
      4. Domain d5y39h_: 5y39 H: [342607]
        automated match to d1veta_
    7. Domains for 5y3a:
      1. Domain d5y3ab_: 5y3a B: [348684]
        automated match to d1szva_
        complexed with so4
      2. Domain d5y3ac_: 5y3a C: [348739]
        automated match to d6ehpa_
        complexed with so4
      3. Domain d5y3ag_: 5y3a G: [348761]
        automated match to d1szva_
        complexed with so4
      4. Domain d5y3ah_: 5y3a H: [348643]
        automated match to d6ehpa_
        complexed with so4
    8. Domains for 5yk3:
      1. Domain d5yk3b1: 5yk3 B:4-125 [363009]
        Other proteins in same PDB: d5yk3b2, d5yk3c2
        automated match to d5x6ub_
      2. Domain d5yk3c1: 5yk3 C:2-123 [363036]
        Other proteins in same PDB: d5yk3b2, d5yk3c2
        automated match to d1veta_
      3. Domain d5yk3g_: 5yk3 G: [362949]
        Other proteins in same PDB: d5yk3b2, d5yk3c2
        automated match to d1szva_
      4. Domain d5yk3h_: 5yk3 H: [362940]
        Other proteins in same PDB: d5yk3b2, d5yk3c2
        automated match to d6ehpa_
      5. Domain d5yk3l_: 5yk3 l: [363039]
        Other proteins in same PDB: d5yk3b2, d5yk3c2
        automated match to d1szva_
      6. Domain d5yk3m_: 5yk3 m: [362947]
        Other proteins in same PDB: d5yk3b2, d5yk3c2
        automated match to d6ehpa_
    9. Domains for 6b9x:
      1. Domain d6b9xb1: 6b9x B:1-125 [341184]
        Other proteins in same PDB: d6b9xb2
        automated match to d1szva_
      2. Domain d6b9xc_: 6b9x C: [341181]
        Other proteins in same PDB: d6b9xb2
        automated match to d1veta_
    10. Domains for 6ehp:
      1. Domain d6ehpa_: 6ehp A: [339755]
        automated match to d1veta_
        complexed with cl
      2. Domain d6ehpb_: 6ehp B: [339756]
        automated match to d1szva_
        complexed with cl
    11. Domains for 6ehr:
      1. Domain d6ehra_: 6ehr A: [339753]
        Other proteins in same PDB: d6ehrb2
        automated match to d1veta_
      2. Domain d6ehrb1: 6ehr B:2-125 [339754]
        Other proteins in same PDB: d6ehrb2
        automated match to d1szva_
    12. Domains for 6u62:
      1. Domain d6u62e_: 6u62 E: [376336]
        automated match to d1szva_
        complexed with gdp, gtp, mg
      2. Domain d6u62f_: 6u62 F: [376337]
        automated match to d6ehpa_
        complexed with gdp, gtp, mg
  3. Mouse (Mus musculus) [TaxId:10090] [254900] (1 PDB entry)

More info for Protein automated matches from d.110.7.1: Roadblock/LC7 domain

Timeline for Protein automated matches from d.110.7.1: Roadblock/LC7 domain: