Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1886641Class d: Alpha and beta proteins (a+b) [53931] (381 folds)
  3. 1919359Fold d.95: Homing endonuclease-like [55603] (2 superfamilies)
    alpha-beta(2)-alpha-beta(2)-alpha; 2 layers: a/b; antiparallel sheet 1243
  4. 1919370Superfamily d.95.2: Homing endonucleases [55608] (3 families) (S)
  5. 1919371Family d.95.2.1: Group I mobile intron endonuclease [55609] (6 proteins)
    contains two extra helices in the C-terminal extension
  6. 1919427Protein automated matches [190411] (4 species)
    not a true protein

Species:

  1. 1919428Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [233115] (2 PDB entries)
    1. Domains for 3ool:
      1. 1919429Domain d3oola1: 3ool A:3-120 [233116]
        automated match to d1r7ma1
        protein/DNA complex; complexed with ca
      2. 1919430Domain d3oola2: 3ool A:121-225 [233117]
        automated match to d1r7ma2
        protein/DNA complex; complexed with ca
    2. Domains for 3oor:
      1. 1919431Domain d3oora1: 3oor A:3-120 [233120]
        automated match to d1r7ma1
        protein/DNA complex; complexed with ca; mutant
      2. 1919432Domain d3oora2: 3oor A:121-225 [233121]
        automated match to d1r7ma2
        protein/DNA complex; complexed with ca; mutant
  2. 1919433Emericella nidulans [TaxId:162425] [232056] (1 PDB entry)
  3. 1919440Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [187286] (9 PDB entries)
    1. Domains for 2i3p:
      1. 1919459Domain d2i3pa_: 2i3p A: [165377]
        automated match to d1bp7a_
        protein/DNA complex; complexed with ca; mutant
      2. 1919460Domain d2i3pb_: 2i3p B: [165378]
        automated match to d1bp7a_
        protein/DNA complex; complexed with ca; mutant
    2. Domains for 2i3q:
      1. 1919457Domain d2i3qa_: 2i3q A: [165379]
        automated match to d1bp7a_
        protein/DNA complex; complexed with ca; mutant
      2. 1919458Domain d2i3qb_: 2i3q B: [165380]
        automated match to d1bp7a_
        protein/DNA complex; complexed with ca; mutant
    3. Domains for 2o7m:
      1. 1919449Domain d2o7ma_: 2o7m A: [148668]
        automated match to d1t9ib_
      2. 1919450Domain d2o7mb_: 2o7m B: [148669]
        automated match to d1t9ib_
    4. Domains for 2vbj:
      1. 1919447Domain d2vbja_: 2vbj A: [168439]
        automated match to d1bp7a_
        protein/DNA complex; complexed with ca
      2. 1919448Domain d2vbjb_: 2vbj B: [168440]
        automated match to d1bp7a_
        protein/DNA complex; complexed with ca
    5. Domains for 2vbl:
      1. 1919443Domain d2vbla_: 2vbl A: [168441]
        automated match to d1bp7a_
        complexed with mg
      2. 1919444Domain d2vblb_: 2vbl B: [168442]
        automated match to d1bp7a_
        complexed with mg
    6. Domains for 2vbn:
      1. 1919445Domain d2vbna_: 2vbn A: [168443]
        automated match to d1bp7a_
        complexed with ca, mg
      2. 1919446Domain d2vbnb_: 2vbn B: [168444]
        automated match to d1bp7a_
        complexed with ca, mg
    7. Domains for 2vbo:
      1. 1919441Domain d2vboa_: 2vbo A: [168445]
        automated match to d1bp7a_
        complexed with ca
      2. 1919442Domain d2vbob_: 2vbo B: [168446]
        automated match to d1bp7a_
        complexed with ca
    8. Domains for 2xe0:
      1. 1919455Domain d2xe0a_: 2xe0 A: [170046]
        automated match to d1bp7a_
        protein/DNA complex; complexed with act, mg, pgo
      2. 1919456Domain d2xe0b_: 2xe0 B: [170047]
        automated match to d1bp7a_
        protein/DNA complex; complexed with act, mg, pgo
    9. Domains for 3mxb:
      1. 1919451Domain d3mxba_: 3mxb A: [181657]
        automated match to d1t9ib_
        protein/DNA complex; complexed with ca, po4
      2. 1919452Domain d3mxbb_: 3mxb B: [181658]
        automated match to d1t9ib_
        protein/DNA complex; complexed with ca, po4
      3. 1919453Domain d3mxbr_: 3mxb R: [181659]
        automated match to d1t9ib_
        protein/DNA complex; complexed with ca, po4
      4. 1919454Domain d3mxbs_: 3mxb S: [181660]
        automated match to d1t9ib_
        protein/DNA complex; complexed with ca, po4
  4. 1919461Monomastix sp. [TaxId:141716] [267832] (1 PDB entry)

More info for Protein automated matches from d.95.2.1: Group I mobile intron endonuclease

Timeline for Protein automated matches from d.95.2.1: Group I mobile intron endonuclease: