Lineage for Protein: automated matches

  1. Root: SCOPe 2.02
  2. 1190016Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1199112Fold d.22: GFP-like [54510] (1 superfamily)
    beta-sheet folds into a barrel (n=11, S=14) around the central helix
  4. 1199113Superfamily d.22.1: GFP-like [54511] (3 families) (S)
  5. 1199114Family d.22.1.1: Fluorescent proteins [54512] (6 proteins)
  6. 1199312Protein automated matches [190406] (14 species)
    not a true protein

Species:

  1. 1199313Aequorea coerulescens [TaxId:210840] [189267] (3 PDB entries)
    1. Domains for 3lva:
      1. 1199316Domain d3lvaa_: 3lva A: [180585]
        automated match to d1qyoa_
        complexed with gol, so4
      2. 1199317Domain d3lvab_: 3lva B: [180586]
        automated match to d1qyoa_
        complexed with gol, so4
    2. Domains for 3lvc:
      1. 1199314Domain d3lvca_: 3lvc A: [180587]
        automated match to d1qyoa_
        complexed with gol
      2. 1199315Domain d3lvcb_: 3lvc B: [180588]
        automated match to d1qyoa_
        complexed with gol
    3. Domains for 3lvd:
      1. 1199318Domain d3lvda_: 3lvd A: [180589]
        automated match to d1qyoa_
        complexed with gol
      2. 1199319Domain d3lvdb_: 3lvd B: [180590]
        automated match to d1qyoa_
        complexed with gol
  2. 1199320Artificial gene [TaxId:32630] [189424] (5 PDB entries)
    1. Domains for 3nt3:
      1. 1199321Domain d3nt3a_: 3nt3 A: [182529]
        automated match to d1uisa_
        complexed with gol
      2. 1199322Domain d3nt3b_: 3nt3 B: [182530]
        automated match to d1uisa_
        complexed with gol
      3. 1199323Domain d3nt3c_: 3nt3 C: [182531]
        automated match to d1uisa_
        complexed with gol
      4. 1199324Domain d3nt3d_: 3nt3 D: [182532]
        automated match to d1uisa_
        complexed with gol
    2. Domains for 3nt9:
      1. 1199327Domain d3nt9a_: 3nt9 A: [182533]
        automated match to d1uisa_
      2. 1199328Domain d3nt9b_: 3nt9 B: [182534]
        automated match to d1uisa_
      3. 1199329Domain d3nt9c_: 3nt9 C: [182535]
        automated match to d1uisa_
      4. 1199330Domain d3nt9d_: 3nt9 D: [182536]
        automated match to d1uisa_
    3. Domain for 3svn:
    4. Domain for 3svo:
    5. Domain for 3svu:
  3. 1199332Azotobacter vinelandii [TaxId:354] [188536] (1 PDB entry)
  4. 1199334Cnidopus japonicus [TaxId:380086] [188533] (2 PDB entries)
    1. Domains for 2ib5:
      1. 1199335Domain d2ib5a_: 2ib5 A: [165467]
        automated match to d1xqma_
        complexed with po4; mutant
      2. 1199336Domain d2ib5b_: 2ib5 B: [165468]
        automated match to d1xqma_
        complexed with po4; mutant
      3. 1199337Domain d2ib5c_: 2ib5 C: [165469]
        automated match to d1xqma_
        complexed with po4; mutant
      4. 1199338Domain d2ib5d_: 2ib5 D: [165470]
        automated match to d1xqma_
        complexed with po4; mutant
      5. 1199339Domain d2ib5e_: 2ib5 E: [165471]
        automated match to d1xqma_
        complexed with po4; mutant
      6. 1199340Domain d2ib5f_: 2ib5 F: [165472]
        automated match to d1xqma_
        complexed with po4; mutant
      7. 1199341Domain d2ib5g_: 2ib5 G: [165473]
        automated match to d1xqma_
        complexed with po4; mutant
      8. 1199342Domain d2ib5h_: 2ib5 H: [165474]
        automated match to d1xqma_
        complexed with po4; mutant
    2. Domains for 2ib6:
      1. 1199343Domain d2ib6a_: 2ib6 A: [165475]
        automated match to d1xqma_
        complexed with po4; mutant
      2. 1199344Domain d2ib6b_: 2ib6 B: [165476]
        automated match to d1xqma_
        complexed with po4; mutant
      3. 1199345Domain d2ib6c_: 2ib6 C: [165477]
        automated match to d1xqma_
        complexed with po4; mutant
      4. 1199346Domain d2ib6d_: 2ib6 D: [165478]
        automated match to d1xqma_
        complexed with po4; mutant
      5. 1199347Domain d2ib6e_: 2ib6 E: [165479]
        automated match to d1xqma_
        complexed with po4; mutant
      6. 1199348Domain d2ib6f_: 2ib6 F: [165480]
        automated match to d1xqma_
        complexed with po4; mutant
      7. 1199349Domain d2ib6g_: 2ib6 G: [165481]
        automated match to d1xqma_
        complexed with po4; mutant
      8. 1199350Domain d2ib6h_: 2ib6 H: [165482]
        automated match to d1xqma_
        complexed with po4; mutant
  5. 1199351Coral (Discosoma sp.) [TaxId:86600] [188539] (17 PDB entries)
    1. Domains for 1zgo:
      1. 1199360Domain d1zgoa_: 1zgo A: [162456]
        automated match to d1g7ka_
      2. 1199361Domain d1zgob_: 1zgo B: [162457]
        automated match to d1g7ka_
      3. 1199362Domain d1zgoc_: 1zgo C: [162458]
        automated match to d1g7ka_
      4. 1199363Domain d1zgod_: 1zgo D: [162459]
        automated match to d1g7ka_
    2. Domains for 1zgp:
      1. 1199390Domain d1zgpa_: 1zgp A: [162460]
        automated match to d1g7ka_
      2. 1199391Domain d1zgpb_: 1zgp B: [162461]
        automated match to d1g7ka_
      3. 1199392Domain d1zgpc_: 1zgp C: [162462]
        automated match to d1g7ka_
      4. 1199393Domain d1zgpd_: 1zgp D: [162463]
        automated match to d1g7ka_
    3. Domains for 1zgq:
      1. 1199380Domain d1zgqa_: 1zgq A: [162464]
        automated match to d1g7ka_
        complexed with peg
      2. 1199381Domain d1zgqb_: 1zgq B: [162465]
        automated match to d1g7ka_
        complexed with peg
      3. 1199382Domain d1zgqc_: 1zgq C: [162466]
        automated match to d1g7ka_
        complexed with peg
      4. 1199383Domain d1zgqd_: 1zgq D: [162467]
        automated match to d1g7ka_
        complexed with peg
      5. 1199384Domain d1zgqe_: 1zgq E: [162468]
        automated match to d1g7ka_
        complexed with peg
      6. 1199385Domain d1zgqf_: 1zgq F: [162469]
        automated match to d1g7ka_
        complexed with peg
      7. 1199386Domain d1zgqg_: 1zgq G: [162470]
        automated match to d1g7ka_
        complexed with peg
      8. 1199387Domain d1zgqh_: 1zgq H: [162471]
        automated match to d1g7ka_
        complexed with peg
    4. Domains for 2h5o:
      1. 1199353Domain d2h5oa_: 2h5o A: [164951]
        automated match to d1g7ka_
        complexed with mg
      2. 1199354Domain d2h5ob_: 2h5o B: [164952]
        automated match to d1g7ka_
        complexed with mg
    5. Domain for 2h5p:
    6. Domain for 2h5q:
    7. Domain for 2h5r:
    8. Domains for 2qlh:
      1. 1199388Domain d2qlha_: 2qlh A: [167709]
        automated match to d1g7ka_
        mutant
      2. 1199389Domain d2qlhb_: 2qlh B: [167710]
        automated match to d1g7ka_
        mutant
    9. Domains for 2qli:
      1. 1199358Domain d2qlia_: 2qli A: [167711]
        automated match to d1g7ka_
        mutant
      2. 1199359Domain d2qlib_: 2qli B: [167712]
        automated match to d1g7ka_
        mutant
    10. Domains for 2v4e:
      1. 1199394Domain d2v4ea_: 2v4e A: [168332]
        automated match to d1g7ka_
      2. 1199395Domain d2v4eb_: 2v4e B: [168333]
        automated match to d1g7ka_
      3. 1199396Domain d2v4ec_: 2v4e C: [168334]
        automated match to d1g7ka_
      4. 1199397Domain d2v4ed_: 2v4e D: [168335]
        automated match to d1g7ka_
      5. 1199398Domain d2v4ee_: 2v4e E: [168336]
        automated match to d1g7ka_
      6. 1199399Domain d2v4ef_: 2v4e F: [168337]
        automated match to d1g7ka_
      7. 1199400Domain d2v4eg_: 2v4e G: [168338]
        automated match to d1g7ka_
      8. 1199401Domain d2v4eh_: 2v4e H: [168339]
        automated match to d1g7ka_
    11. Domain for 2vad:
    12. Domains for 2vae:
      1. 1199366Domain d2vaea_: 2vae A: [168427]
        automated match to d1g7ka_
        complexed with edo
      2. 1199367Domain d2vaeb_: 2vae B: [168428]
        automated match to d1g7ka_
        complexed with edo
      3. 1199368Domain d2vaec_: 2vae C: [168429]
        automated match to d1g7ka_
        complexed with edo
      4. 1199369Domain d2vaed_: 2vae D: [168430]
        automated match to d1g7ka_
        complexed with edo
      5. 1199370Domain d2vaee_: 2vae E: [168431]
        automated match to d1g7ka_
        complexed with edo
      6. 1199371Domain d2vaef_: 2vae F: [168432]
        automated match to d1g7ka_
        complexed with edo
      7. 1199372Domain d2vaeg_: 2vae G: [168433]
        automated match to d1g7ka_
        complexed with edo
      8. 1199373Domain d2vaeh_: 2vae H: [168434]
        automated match to d1g7ka_
        complexed with edo
    13. Domain for 3kcs:
    14. Domain for 3kct:
    15. Domain for 3lf3:
    16. Domain for 3ned:
    17. Domains for 3nez:
      1. 1199376Domain d3neza_: 3nez A: [182212]
        automated match to d1g7ka_
      2. 1199377Domain d3nezb_: 3nez B: [182213]
        automated match to d1g7ka_
      3. 1199378Domain d3nezc_: 3nez C: [182214]
        automated match to d1g7ka_
      4. 1199379Domain d3nezd_: 3nez D: [182215]
        automated match to d1g7ka_
  6. 1199402Coral (Montipora efflorescens) [TaxId:105610] [188535] (3 PDB entries)
    1. Domains for 2p4m:
      1. 1199403Domain d2p4ma_: 2p4m A: [191680]
        automated match to d2p4md_
        complexed with iod
      2. 1199404Domain d2p4mb_: 2p4m B: [191681]
        automated match to d2p4md_
        complexed with iod
      3. 1199405Domain d2p4mc_: 2p4m C: [191682]
        automated match to d2p4md_
        complexed with iod
      4. 1199406Domain d2p4md_: 2p4m D: [167001]
        automated match to d1mova_
        complexed with iod
      5. 1199407Domain d2p4me_: 2p4m E: [191683]
        automated match to d2p4md_
        complexed with iod
      6. 1199408Domain d2p4mf_: 2p4m F: [191684]
        automated match to d2p4md_
        complexed with iod
      7. 1199409Domain d2p4mg_: 2p4m G: [191685]
        automated match to d2p4md_
        complexed with iod
      8. 1199410Domain d2p4mh_: 2p4m H: [191686]
        automated match to d2p4md_
        complexed with iod
    2. Domains for 3vic:
      1. 1199411Domain d3vicc_: 3vic C: [195206]
        automated match to d2p4md_
        complexed with cl, iod
      2. 1199412Domain d3vich_: 3vic H: [195204]
        automated match to d2p4md_
        complexed with cl, iod
    3. Domain for 3vk1:
  7. 1199414Dendronephthya sp. [TaxId:191210] [188919] (1 PDB entry)
  8. 1199423Discosoma sp. [TaxId:301246] [188540] (5 PDB entries)
    1. Domains for 2qlg:
      1. 1199425Domain d2qlga_: 2qlg A: [167707]
        automated match to d1g7ka_
      2. 1199426Domain d2qlgb_: 2qlg B: [167708]
        automated match to d1g7ka_
    2. Domain for 3nf0:
    3. Domain for 4h3l:
    4. Domains for 4h3m:
      1. 1199429Domain d4h3ma_: 4h3m A: [194454]
        automated match to d3nf0a_
      2. 1199430Domain d4h3mb_: 4h3m B: [194455]
        automated match to d3nf0a_
    5. Domain for 4h3n:
  9. 1199431Discosoma striata [188537] (1 PDB entry)
  10. 1199438Heteractis crispa [TaxId:175771] [188161] (1 PDB entry)
  11. 1199443Jellyfish (Aequorea victoria) [TaxId:6100] [188134] (35 PDB entries)
    1. Domains for 1w7s:
      1. 1199473Domain d1w7sa_: 1w7s A: [161907]
        automated match to d1hcjc_
      2. 1199474Domain d1w7sb_: 1w7s B: [161908]
        automated match to d1hcjc_
      3. 1199475Domain d1w7sc_: 1w7s C: [161909]
        automated match to d1hcjc_
      4. 1199476Domain d1w7sd_: 1w7s D: [161910]
        automated match to d1hcjc_
    2. Domains for 1w7t:
      1. 1199477Domain d1w7ta_: 1w7t A: [161911]
        automated match to d1hcjc_
      2. 1199478Domain d1w7tb_: 1w7t B: [161912]
        automated match to d1hcjc_
      3. 1199479Domain d1w7tc_: 1w7t C: [161913]
        automated match to d1hcjc_
      4. 1199480Domain d1w7td_: 1w7t D: [161914]
        automated match to d1hcjc_
    3. Domains for 1w7u:
      1. 1199481Domain d1w7ua_: 1w7u A: [161915]
        automated match to d1hcjc_
      2. 1199482Domain d1w7ub_: 1w7u B: [161916]
        automated match to d1hcjc_
      3. 1199483Domain d1w7uc_: 1w7u C: [161917]
        automated match to d1hcjc_
      4. 1199484Domain d1w7ud_: 1w7u D: [161918]
        automated match to d1hcjc_
    4. Domains for 1yhg:
      1. 1199495Domain d1yhga_: 1yhg A: [162201]
        automated match to d1qyoa_
      2. 1199496Domain d1yhgb_: 1yhg B: [162202]
        automated match to d1qyoa_
    5. Domain for 1yhh:
    6. Domain for 1yhi:
    7. Domain for 1yj2:
    8. Domain for 1yjf:
    9. Domain for 1z1p:
    10. Domain for 1z1q:
    11. Domain for 2b3p:
    12. Domains for 2b3q:
      1. 1199491Domain d2b3qa_: 2b3q A: [162985]
        automated match to d1qyoa_
        complexed with mg
      2. 1199492Domain d2b3qb_: 2b3q B: [162986]
        automated match to d1qyoa_
        complexed with mg
      3. 1199493Domain d2b3qc_: 2b3q C: [162987]
        automated match to d1qyoa_
        complexed with mg
      4. 1199494Domain d2b3qd_: 2b3q D: [162988]
        automated match to d1qyoa_
        complexed with mg
    13. Domain for 2due:
    14. Domain for 2duf:
    15. Domain for 2dug:
    16. Domain for 2duh:
    17. Domain for 2dui:
    18. Domain for 2hqz:
    19. Domain for 2q57:
    20. Domain for 2wsn:
    21. Domain for 2wso:
    22. Domain for 2wur:
    23. Domain for 2y0g:
    24. Domain for 2ydz:
    25. Domain for 2ye0:
    26. Domain for 2ye1:
    27. Domains for 3ed8:
      1. 1199497Domain d3ed8a_: 3ed8 A: [174857]
        automated match to d1qyoa_
      2. 1199498Domain d3ed8b_: 3ed8 B: [174858]
        automated match to d1qyoa_
      3. 1199499Domain d3ed8c_: 3ed8 C: [174859]
        automated match to d1qyoa_
      4. 1199500Domain d3ed8d_: 3ed8 D: [174860]
        automated match to d1qyoa_
      5. 1199501Domain d3ed8e_: 3ed8 E: [174861]
        automated match to d1qyoa_
    28. Domains for 3st2:
      1. 1199470Domain d3st2a_: 3st2 A: [185513]
        automated match to d1huya_
        complexed with po4
      2. 1199471Domain d3st2b_: 3st2 B: [185514]
        automated match to d1huya_
        complexed with po4
      3. 1199472Domain d3st2c_: 3st2 C: [185515]
        automated match to d1huya_
        complexed with po4
    29. Domains for 3st3:
      1. 1199467Domain d3st3a_: 3st3 A: [185516]
        automated match to d1huya_
        complexed with po4
      2. 1199468Domain d3st3b_: 3st3 B: [185517]
        automated match to d1huya_
        complexed with po4
      3. 1199469Domain d3st3c_: 3st3 C: [185518]
        automated match to d1huya_
        complexed with po4
    30. Domains for 3st4:
      1. 1199485Domain d3st4a_: 3st4 A: [185519]
        automated match to d1huya_
        complexed with po4
      2. 1199486Domain d3st4b_: 3st4 B: [185520]
        automated match to d1huya_
        complexed with po4
      3. 1199487Domain d3st4c_: 3st4 C: [185521]
        automated match to d1huya_
        complexed with po4
    31. Domain for 3ztf:
    32. Domain for 4ar7:
    33. Domain for 4as8:
    34. Domain for 4en1:
    35. Domain for 4j8a:
  12. 1199502Montipora sp. [TaxId:321802] [189025] (1 PDB entry)
  13. 1199505Sea anemone (Anemonia sulcata) [TaxId:6108] [188527] (2 PDB entries)
    1. Domains for 1xmz:
      1. 1199506Domain d1xmza_: 1xmz A: [162089]
        automated match to d1xqma_
        complexed with bme, nh2
      2. 1199507Domain d1xmzb_: 1xmz B: [162090]
        automated match to d1xqma_
        complexed with bme, nh2
    2. Domains for 2c9i:
      1. 1199508Domain d2c9ia_: 2c9i A: [163336]
        automated match to d1uisa_
      2. 1199509Domain d2c9ib_: 2c9i B: [163337]
        automated match to d1uisa_
      3. 1199510Domain d2c9ic_: 2c9i C: [163338]
        automated match to d1uisa_
      4. 1199511Domain d2c9id_: 2c9i D: [163339]
        automated match to d1uisa_
      5. 1199512Domain d2c9ie_: 2c9i E: [163340]
        automated match to d1uisa_
      6. 1199513Domain d2c9if_: 2c9i F: [163341]
        automated match to d1uisa_
      7. 1199514Domain d2c9ig_: 2c9i G: [163342]
        automated match to d1uisa_
      8. 1199515Domain d2c9ih_: 2c9i H: [163343]
        automated match to d1uisa_
  14. 1199516Sea anemone (Entacmaea quadricolor) [TaxId:6118] [188538] (17 PDB entries)
    1. Domains for 3bx9:
      1. 1199536Domain d3bx9a_: 3bx9 A: [172903]
        automated match to d1uisa_
        complexed with cit, gol
      2. 1199537Domain d3bx9b_: 3bx9 B: [172904]
        automated match to d1uisa_
        complexed with cit, gol
    2. Domains for 3bxa:
      1. 1199527Domain d3bxaa_: 3bxa A: [172905]
        automated match to d1uisa_
        complexed with cit
      2. 1199528Domain d3bxab_: 3bxa B: [172906]
        automated match to d1uisa_
        complexed with cit
    3. Domains for 3bxb:
      1. 1199545Domain d3bxba_: 3bxb A: [172907]
        automated match to d1uisa_
      2. 1199546Domain d3bxbb_: 3bxb B: [172908]
        automated match to d1uisa_
      3. 1199547Domain d3bxbc_: 3bxb C: [172909]
        automated match to d1uisa_
      4. 1199548Domain d3bxbd_: 3bxb D: [172910]
        automated match to d1uisa_
      5. 1199549Domain d3bxbe_: 3bxb E: [172911]
        automated match to d1uisa_
      6. 1199550Domain d3bxbf_: 3bxb F: [172912]
        automated match to d1uisa_
      7. 1199551Domain d3bxbg_: 3bxb G: [172913]
        automated match to d1uisa_
      8. 1199552Domain d3bxbh_: 3bxb H: [172914]
        automated match to d1uisa_
    4. Domains for 3bxc:
      1. 1199553Domain d3bxca_: 3bxc A: [172915]
        automated match to d1uisa_
      2. 1199554Domain d3bxcb_: 3bxc B: [172916]
        automated match to d1uisa_
      3. 1199555Domain d3bxcc_: 3bxc C: [172917]
        automated match to d1uisa_
      4. 1199556Domain d3bxcd_: 3bxc D: [172918]
        automated match to d1uisa_
      5. 1199557Domain d3bxce_: 3bxc E: [172919]
        automated match to d1uisa_
      6. 1199558Domain d3bxcf_: 3bxc F: [172920]
        automated match to d1uisa_
      7. 1199559Domain d3bxcg_: 3bxc G: [172921]
        automated match to d1uisa_
      8. 1199560Domain d3bxch_: 3bxc H: [172922]
        automated match to d1uisa_
    5. Domain for 3e5t:
    6. Domain for 3e5v:
    7. Domains for 3e5w:
      1. 1199529Domain d3e5wa_: 3e5w A: [174678]
        automated match to d1uisa_
      2. 1199530Domain d3e5wb_: 3e5w B: [174679]
        automated match to d1uisa_
      3. 1199531Domain d3e5wc_: 3e5w C: [174680]
        automated match to d1uisa_
      4. 1199532Domain d3e5wd_: 3e5w D: [174681]
        automated match to d1uisa_
    8. Domains for 3h1o:
      1. 1199542Domain d3h1oa_: 3h1o A: [177149]
        automated match to d1uisa_
        complexed with gol
      2. 1199543Domain d3h1ob_: 3h1o B: [177150]
        automated match to d1uisa_
        complexed with gol
    9. Domain for 3h1r:
    10. Domain for 3ip2:
    11. Domains for 3pib:
      1. 1199518Domain d3piba_: 3pib A: [183771]
        automated match to d1uisa_
        complexed with gol
      2. 1199519Domain d3pibb_: 3pib B: [183772]
        automated match to d1uisa_
        complexed with gol
      3. 1199520Domain d3pibc_: 3pib C: [183773]
        automated match to d1uisa_
        complexed with gol
      4. 1199521Domain d3pibd_: 3pib D: [183774]
        automated match to d1uisa_
        complexed with gol
    12. Domains for 3pj5:
      1. 1199525Domain d3pj5a_: 3pj5 A: [183784]
        automated match to d1uisa_
        complexed with so4
      2. 1199526Domain d3pj5b_: 3pj5 B: [183785]
        automated match to d1uisa_
        complexed with so4
    13. Domains for 3pj7:
      1. 1199538Domain d3pj7a_: 3pj7 A: [183787]
        automated match to d1uisa_
      2. 1199539Domain d3pj7b_: 3pj7 B: [183788]
        automated match to d1uisa_
      3. 1199540Domain d3pj7c_: 3pj7 C: [183789]
        automated match to d1uisa_
      4. 1199541Domain d3pj7d_: 3pj7 D: [183790]
        automated match to d1uisa_
    14. Domains for 3pjb:
      1. 1199533Domain d3pjba_: 3pjb A: [183796]
        automated match to d1uisa_
        complexed with gol
      2. 1199534Domain d3pjbb_: 3pjb B: [183797]
        automated match to d1uisa_
        complexed with gol
    15. Domain for 3u0l:
    16. Domain for 4edo:
    17. Domain for 4eds:

More info for Protein automated matches from d.22.1.1: Fluorescent proteins

Timeline for Protein automated matches from d.22.1.1: Fluorescent proteins: