Lineage for Protein: automated matches

  1. Root: SCOPe 2.01
  2. 1013083Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1021948Fold d.22: GFP-like [54510] (1 superfamily)
    beta-sheet folds into a barrel (n=11, S=14) around the central helix
  4. 1021949Superfamily d.22.1: GFP-like [54511] (3 families) (S)
  5. 1021950Family d.22.1.1: Fluorescent proteins [54512] (6 proteins)
  6. 1022143Protein automated matches [190406] (14 species)
    not a true protein

Species:

  1. 1022144Aequorea coerulescens [TaxId:210840] [189267] (3 PDB entries)
    1. Domains for 3lva:
      1. 1022147Domain d3lvaa_: 3lva A: [180585]
        automated match to d1qyoa_
        complexed with gol, so4
      2. 1022148Domain d3lvab_: 3lva B: [180586]
        automated match to d1qyoa_
        complexed with gol, so4
    2. Domains for 3lvc:
      1. 1022145Domain d3lvca_: 3lvc A: [180587]
        automated match to d1qyoa_
        complexed with gol
      2. 1022146Domain d3lvcb_: 3lvc B: [180588]
        automated match to d1qyoa_
        complexed with gol
    3. Domains for 3lvd:
      1. 1022149Domain d3lvda_: 3lvd A: [180589]
        automated match to d1qyoa_
        complexed with gol
      2. 1022150Domain d3lvdb_: 3lvd B: [180590]
        automated match to d1qyoa_
        complexed with gol
  2. 1022151Artificial gene [TaxId:32630] [189424] (2 PDB entries)
    1. Domains for 3nt3:
      1. 1022152Domain d3nt3a_: 3nt3 A: [182529]
        automated match to d1uisa_
        complexed with gol
      2. 1022153Domain d3nt3b_: 3nt3 B: [182530]
        automated match to d1uisa_
        complexed with gol
      3. 1022154Domain d3nt3c_: 3nt3 C: [182531]
        automated match to d1uisa_
        complexed with gol
      4. 1022155Domain d3nt3d_: 3nt3 D: [182532]
        automated match to d1uisa_
        complexed with gol
    2. Domains for 3nt9:
      1. 1022156Domain d3nt9a_: 3nt9 A: [182533]
        automated match to d1uisa_
      2. 1022157Domain d3nt9b_: 3nt9 B: [182534]
        automated match to d1uisa_
      3. 1022158Domain d3nt9c_: 3nt9 C: [182535]
        automated match to d1uisa_
      4. 1022159Domain d3nt9d_: 3nt9 D: [182536]
        automated match to d1uisa_
  3. 1022160Azotobacter vinelandii [TaxId:354] [188536] (1 PDB entry)
  4. 1022162Cnidopus japonicus [TaxId:380086] [188533] (2 PDB entries)
    1. Domains for 2ib5:
      1. 1022163Domain d2ib5a_: 2ib5 A: [165467]
        automated match to d1xqma_
        complexed with po4; mutant
      2. 1022164Domain d2ib5b_: 2ib5 B: [165468]
        automated match to d1xqma_
        complexed with po4; mutant
      3. 1022165Domain d2ib5c_: 2ib5 C: [165469]
        automated match to d1xqma_
        complexed with po4; mutant
      4. 1022166Domain d2ib5d_: 2ib5 D: [165470]
        automated match to d1xqma_
        complexed with po4; mutant
      5. 1022167Domain d2ib5e_: 2ib5 E: [165471]
        automated match to d1xqma_
        complexed with po4; mutant
      6. 1022168Domain d2ib5f_: 2ib5 F: [165472]
        automated match to d1xqma_
        complexed with po4; mutant
      7. 1022169Domain d2ib5g_: 2ib5 G: [165473]
        automated match to d1xqma_
        complexed with po4; mutant
      8. 1022170Domain d2ib5h_: 2ib5 H: [165474]
        automated match to d1xqma_
        complexed with po4; mutant
    2. Domains for 2ib6:
      1. 1022171Domain d2ib6a_: 2ib6 A: [165475]
        automated match to d1xqma_
        complexed with po4; mutant
      2. 1022172Domain d2ib6b_: 2ib6 B: [165476]
        automated match to d1xqma_
        complexed with po4; mutant
      3. 1022173Domain d2ib6c_: 2ib6 C: [165477]
        automated match to d1xqma_
        complexed with po4; mutant
      4. 1022174Domain d2ib6d_: 2ib6 D: [165478]
        automated match to d1xqma_
        complexed with po4; mutant
      5. 1022175Domain d2ib6e_: 2ib6 E: [165479]
        automated match to d1xqma_
        complexed with po4; mutant
      6. 1022176Domain d2ib6f_: 2ib6 F: [165480]
        automated match to d1xqma_
        complexed with po4; mutant
      7. 1022177Domain d2ib6g_: 2ib6 G: [165481]
        automated match to d1xqma_
        complexed with po4; mutant
      8. 1022178Domain d2ib6h_: 2ib6 H: [165482]
        automated match to d1xqma_
        complexed with po4; mutant
  5. 1022179Coral (Discosoma sp.) [TaxId:86600] [188539] (17 PDB entries)
    1. Domains for 1zgo:
      1. 1022188Domain d1zgoa_: 1zgo A: [162456]
        automated match to d1g7ka_
      2. 1022189Domain d1zgob_: 1zgo B: [162457]
        automated match to d1g7ka_
      3. 1022190Domain d1zgoc_: 1zgo C: [162458]
        automated match to d1g7ka_
      4. 1022191Domain d1zgod_: 1zgo D: [162459]
        automated match to d1g7ka_
    2. Domains for 1zgp:
      1. 1022218Domain d1zgpa_: 1zgp A: [162460]
        automated match to d1g7ka_
      2. 1022219Domain d1zgpb_: 1zgp B: [162461]
        automated match to d1g7ka_
      3. 1022220Domain d1zgpc_: 1zgp C: [162462]
        automated match to d1g7ka_
      4. 1022221Domain d1zgpd_: 1zgp D: [162463]
        automated match to d1g7ka_
    3. Domains for 1zgq:
      1. 1022208Domain d1zgqa_: 1zgq A: [162464]
        automated match to d1g7ka_
        complexed with peg
      2. 1022209Domain d1zgqb_: 1zgq B: [162465]
        automated match to d1g7ka_
        complexed with peg
      3. 1022210Domain d1zgqc_: 1zgq C: [162466]
        automated match to d1g7ka_
        complexed with peg
      4. 1022211Domain d1zgqd_: 1zgq D: [162467]
        automated match to d1g7ka_
        complexed with peg
      5. 1022212Domain d1zgqe_: 1zgq E: [162468]
        automated match to d1g7ka_
        complexed with peg
      6. 1022213Domain d1zgqf_: 1zgq F: [162469]
        automated match to d1g7ka_
        complexed with peg
      7. 1022214Domain d1zgqg_: 1zgq G: [162470]
        automated match to d1g7ka_
        complexed with peg
      8. 1022215Domain d1zgqh_: 1zgq H: [162471]
        automated match to d1g7ka_
        complexed with peg
    4. Domains for 2h5o:
      1. 1022181Domain d2h5oa_: 2h5o A: [164951]
        automated match to d1g7ka_
        complexed with mg
      2. 1022182Domain d2h5ob_: 2h5o B: [164952]
        automated match to d1g7ka_
        complexed with mg
    5. Domain for 2h5p:
    6. Domain for 2h5q:
    7. Domain for 2h5r:
    8. Domains for 2qlh:
      1. 1022216Domain d2qlha_: 2qlh A: [167709]
        automated match to d1g7ka_
        mutant
      2. 1022217Domain d2qlhb_: 2qlh B: [167710]
        automated match to d1g7ka_
        mutant
    9. Domains for 2qli:
      1. 1022186Domain d2qlia_: 2qli A: [167711]
        automated match to d1g7ka_
        mutant
      2. 1022187Domain d2qlib_: 2qli B: [167712]
        automated match to d1g7ka_
        mutant
    10. Domains for 2v4e:
      1. 1022222Domain d2v4ea_: 2v4e A: [168332]
        automated match to d1g7ka_
      2. 1022223Domain d2v4eb_: 2v4e B: [168333]
        automated match to d1g7ka_
      3. 1022224Domain d2v4ec_: 2v4e C: [168334]
        automated match to d1g7ka_
      4. 1022225Domain d2v4ed_: 2v4e D: [168335]
        automated match to d1g7ka_
      5. 1022226Domain d2v4ee_: 2v4e E: [168336]
        automated match to d1g7ka_
      6. 1022227Domain d2v4ef_: 2v4e F: [168337]
        automated match to d1g7ka_
      7. 1022228Domain d2v4eg_: 2v4e G: [168338]
        automated match to d1g7ka_
      8. 1022229Domain d2v4eh_: 2v4e H: [168339]
        automated match to d1g7ka_
    11. Domain for 2vad:
    12. Domains for 2vae:
      1. 1022194Domain d2vaea_: 2vae A: [168427]
        automated match to d1g7ka_
        complexed with edo
      2. 1022195Domain d2vaeb_: 2vae B: [168428]
        automated match to d1g7ka_
        complexed with edo
      3. 1022196Domain d2vaec_: 2vae C: [168429]
        automated match to d1g7ka_
        complexed with edo
      4. 1022197Domain d2vaed_: 2vae D: [168430]
        automated match to d1g7ka_
        complexed with edo
      5. 1022198Domain d2vaee_: 2vae E: [168431]
        automated match to d1g7ka_
        complexed with edo
      6. 1022199Domain d2vaef_: 2vae F: [168432]
        automated match to d1g7ka_
        complexed with edo
      7. 1022200Domain d2vaeg_: 2vae G: [168433]
        automated match to d1g7ka_
        complexed with edo
      8. 1022201Domain d2vaeh_: 2vae H: [168434]
        automated match to d1g7ka_
        complexed with edo
    13. Domain for 3kcs:
    14. Domain for 3kct:
    15. Domain for 3lf3:
    16. Domain for 3ned:
    17. Domains for 3nez:
      1. 1022204Domain d3neza_: 3nez A: [182212]
        automated match to d1g7ka_
      2. 1022205Domain d3nezb_: 3nez B: [182213]
        automated match to d1g7ka_
      3. 1022206Domain d3nezc_: 3nez C: [182214]
        automated match to d1g7ka_
      4. 1022207Domain d3nezd_: 3nez D: [182215]
        automated match to d1g7ka_
  6. 1022230Coral (Montipora efflorescens) [TaxId:105610] [188535] (1 PDB entry)
  7. 1022232Dendronephthya sp. [TaxId:191210] [188919] (1 PDB entry)
  8. 1022241Discosoma sp. [TaxId:301246] [188540] (2 PDB entries)
    1. Domains for 2qlg:
      1. 1022242Domain d2qlga_: 2qlg A: [167707]
        automated match to d1g7ka_
      2. 1022243Domain d2qlgb_: 2qlg B: [167708]
        automated match to d1g7ka_
    2. Domain for 3nf0:
  9. 1022245Discosoma striata [188537] (1 PDB entry)
  10. 1022252Heteractis crispa [TaxId:175771] [188161] (1 PDB entry)
  11. 1022257Jellyfish (Aequorea victoria) [TaxId:6100] [188134] (27 PDB entries)
    1. Domains for 1w7s:
      1. 1022279Domain d1w7sa_: 1w7s A: [161907]
        automated match to d1hcjc_
      2. 1022280Domain d1w7sb_: 1w7s B: [161908]
        automated match to d1hcjc_
      3. 1022281Domain d1w7sc_: 1w7s C: [161909]
        automated match to d1hcjc_
      4. 1022282Domain d1w7sd_: 1w7s D: [161910]
        automated match to d1hcjc_
    2. Domains for 1w7t:
      1. 1022283Domain d1w7ta_: 1w7t A: [161911]
        automated match to d1hcjc_
      2. 1022284Domain d1w7tb_: 1w7t B: [161912]
        automated match to d1hcjc_
      3. 1022285Domain d1w7tc_: 1w7t C: [161913]
        automated match to d1hcjc_
      4. 1022286Domain d1w7td_: 1w7t D: [161914]
        automated match to d1hcjc_
    3. Domains for 1w7u:
      1. 1022287Domain d1w7ua_: 1w7u A: [161915]
        automated match to d1hcjc_
      2. 1022288Domain d1w7ub_: 1w7u B: [161916]
        automated match to d1hcjc_
      3. 1022289Domain d1w7uc_: 1w7u C: [161917]
        automated match to d1hcjc_
      4. 1022290Domain d1w7ud_: 1w7u D: [161918]
        automated match to d1hcjc_
    4. Domains for 1yhg:
      1. 1022301Domain d1yhga_: 1yhg A: [162201]
        automated match to d1qyoa_
      2. 1022302Domain d1yhgb_: 1yhg B: [162202]
        automated match to d1qyoa_
    5. Domain for 1yhh:
    6. Domain for 1yhi:
    7. Domain for 1yj2:
    8. Domain for 1yjf:
    9. Domain for 1z1p:
    10. Domain for 1z1q:
    11. Domain for 2b3p:
    12. Domains for 2b3q:
      1. 1022297Domain d2b3qa_: 2b3q A: [162985]
        automated match to d1qyoa_
        complexed with mg
      2. 1022298Domain d2b3qb_: 2b3q B: [162986]
        automated match to d1qyoa_
        complexed with mg
      3. 1022299Domain d2b3qc_: 2b3q C: [162987]
        automated match to d1qyoa_
        complexed with mg
      4. 1022300Domain d2b3qd_: 2b3q D: [162988]
        automated match to d1qyoa_
        complexed with mg
    13. Domain for 2due:
    14. Domain for 2duf:
    15. Domain for 2dug:
    16. Domain for 2duh:
    17. Domain for 2dui:
    18. Domain for 2hqz:
    19. Domain for 2q57:
    20. Domain for 2wsn:
    21. Domain for 2wso:
    22. Domain for 2wur:
    23. Domain for 2y0g:
    24. Domains for 3ed8:
      1. 1022303Domain d3ed8a_: 3ed8 A: [174857]
        automated match to d1qyoa_
      2. 1022304Domain d3ed8b_: 3ed8 B: [174858]
        automated match to d1qyoa_
      3. 1022305Domain d3ed8c_: 3ed8 C: [174859]
        automated match to d1qyoa_
      4. 1022306Domain d3ed8d_: 3ed8 D: [174860]
        automated match to d1qyoa_
      5. 1022307Domain d3ed8e_: 3ed8 E: [174861]
        automated match to d1qyoa_
    25. Domains for 3st2:
      1. 1022276Domain d3st2a_: 3st2 A: [185513]
        automated match to d1huya_
        complexed with po4
      2. 1022277Domain d3st2b_: 3st2 B: [185514]
        automated match to d1huya_
        complexed with po4
      3. 1022278Domain d3st2c_: 3st2 C: [185515]
        automated match to d1huya_
        complexed with po4
    26. Domains for 3st3:
      1. 1022273Domain d3st3a_: 3st3 A: [185516]
        automated match to d1huya_
        complexed with po4
      2. 1022274Domain d3st3b_: 3st3 B: [185517]
        automated match to d1huya_
        complexed with po4
      3. 1022275Domain d3st3c_: 3st3 C: [185518]
        automated match to d1huya_
        complexed with po4
    27. Domains for 3st4:
      1. 1022291Domain d3st4a_: 3st4 A: [185519]
        automated match to d1huya_
        complexed with po4
      2. 1022292Domain d3st4b_: 3st4 B: [185520]
        automated match to d1huya_
        complexed with po4
      3. 1022293Domain d3st4c_: 3st4 C: [185521]
        automated match to d1huya_
        complexed with po4
  12. 1022308Montipora sp. [TaxId:321802] [189025] (1 PDB entry)
  13. 1022311Sea anemone (Anemonia sulcata) [TaxId:6108] [188527] (2 PDB entries)
    1. Domains for 1xmz:
      1. 1022312Domain d1xmza_: 1xmz A: [162089]
        automated match to d1xqma_
        complexed with bme, nh2
      2. 1022313Domain d1xmzb_: 1xmz B: [162090]
        automated match to d1xqma_
        complexed with bme, nh2
    2. Domains for 2c9i:
      1. 1022314Domain d2c9ia_: 2c9i A: [163336]
        automated match to d1uisa_
      2. 1022315Domain d2c9ib_: 2c9i B: [163337]
        automated match to d1uisa_
      3. 1022316Domain d2c9ic_: 2c9i C: [163338]
        automated match to d1uisa_
      4. 1022317Domain d2c9id_: 2c9i D: [163339]
        automated match to d1uisa_
      5. 1022318Domain d2c9ie_: 2c9i E: [163340]
        automated match to d1uisa_
      6. 1022319Domain d2c9if_: 2c9i F: [163341]
        automated match to d1uisa_
      7. 1022320Domain d2c9ig_: 2c9i G: [163342]
        automated match to d1uisa_
      8. 1022321Domain d2c9ih_: 2c9i H: [163343]
        automated match to d1uisa_
  14. 1022322Sea anemone (Entacmaea quadricolor) [TaxId:6118] [188538] (14 PDB entries)
    1. Domains for 3bx9:
      1. 1022339Domain d3bx9a_: 3bx9 A: [172903]
        automated match to d1uisa_
        complexed with cit, gol
      2. 1022340Domain d3bx9b_: 3bx9 B: [172904]
        automated match to d1uisa_
        complexed with cit, gol
    2. Domains for 3bxa:
      1. 1022331Domain d3bxaa_: 3bxa A: [172905]
        automated match to d1uisa_
        complexed with cit
      2. 1022332Domain d3bxab_: 3bxa B: [172906]
        automated match to d1uisa_
        complexed with cit
    3. Domains for 3bxb:
      1. 1022348Domain d3bxba_: 3bxb A: [172907]
        automated match to d1uisa_
      2. 1022349Domain d3bxbb_: 3bxb B: [172908]
        automated match to d1uisa_
      3. 1022350Domain d3bxbc_: 3bxb C: [172909]
        automated match to d1uisa_
      4. 1022351Domain d3bxbd_: 3bxb D: [172910]
        automated match to d1uisa_
      5. 1022352Domain d3bxbe_: 3bxb E: [172911]
        automated match to d1uisa_
      6. 1022353Domain d3bxbf_: 3bxb F: [172912]
        automated match to d1uisa_
      7. 1022354Domain d3bxbg_: 3bxb G: [172913]
        automated match to d1uisa_
      8. 1022355Domain d3bxbh_: 3bxb H: [172914]
        automated match to d1uisa_
    4. Domains for 3bxc:
      1. 1022356Domain d3bxca_: 3bxc A: [172915]
        automated match to d1uisa_
      2. 1022357Domain d3bxcb_: 3bxc B: [172916]
        automated match to d1uisa_
      3. 1022358Domain d3bxcc_: 3bxc C: [172917]
        automated match to d1uisa_
      4. 1022359Domain d3bxcd_: 3bxc D: [172918]
        automated match to d1uisa_
      5. 1022360Domain d3bxce_: 3bxc E: [172919]
        automated match to d1uisa_
      6. 1022361Domain d3bxcf_: 3bxc F: [172920]
        automated match to d1uisa_
      7. 1022362Domain d3bxcg_: 3bxc G: [172921]
        automated match to d1uisa_
      8. 1022363Domain d3bxch_: 3bxc H: [172922]
        automated match to d1uisa_
    5. Domain for 3e5t:
    6. Domain for 3e5v:
    7. Domains for 3e5w:
      1. 1022333Domain d3e5wa_: 3e5w A: [174678]
        automated match to d1uisa_
      2. 1022334Domain d3e5wb_: 3e5w B: [174679]
        automated match to d1uisa_
      3. 1022335Domain d3e5wc_: 3e5w C: [174680]
        automated match to d1uisa_
      4. 1022336Domain d3e5wd_: 3e5w D: [174681]
        automated match to d1uisa_
    8. Domains for 3h1o:
      1. 1022345Domain d3h1oa_: 3h1o A: [177149]
        automated match to d1uisa_
        complexed with gol
      2. 1022346Domain d3h1ob_: 3h1o B: [177150]
        automated match to d1uisa_
        complexed with gol
    9. Domain for 3h1r:
    10. Domain for 3ip2:
    11. Domains for 3pib:
      1. 1022324Domain d3piba_: 3pib A: [183771]
        automated match to d1uisa_
        complexed with gol
      2. 1022325Domain d3pibb_: 3pib B: [183772]
        automated match to d1uisa_
        complexed with gol
      3. 1022326Domain d3pibc_: 3pib C: [183773]
        automated match to d1uisa_
        complexed with gol
      4. 1022327Domain d3pibd_: 3pib D: [183774]
        automated match to d1uisa_
        complexed with gol
    12. Domains for 3pj5:
      1. 1022329Domain d3pj5a_: 3pj5 A: [183784]
        automated match to d1uisa_
        complexed with so4
      2. 1022330Domain d3pj5b_: 3pj5 B: [183785]
        automated match to d1uisa_
        complexed with so4
    13. Domains for 3pj7:
      1. 1022341Domain d3pj7a_: 3pj7 A: [183787]
        automated match to d1uisa_
      2. 1022342Domain d3pj7b_: 3pj7 B: [183788]
        automated match to d1uisa_
      3. 1022343Domain d3pj7c_: 3pj7 C: [183789]
        automated match to d1uisa_
      4. 1022344Domain d3pj7d_: 3pj7 D: [183790]
        automated match to d1uisa_
    14. Domains for 3pjb:
      1. 1022337Domain d3pjba_: 3pjb A: [183796]
        automated match to d1uisa_
        complexed with gol
      2. 1022338Domain d3pjbb_: 3pjb B: [183797]
        automated match to d1uisa_
        complexed with gol

More info for Protein automated matches from d.22.1.1: Fluorescent proteins

Timeline for Protein automated matches from d.22.1.1: Fluorescent proteins: