Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2530962Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2536142Fold d.9: IL8-like [54116] (2 superfamilies)
    beta(3)-alpha
  4. 2536143Superfamily d.9.1: Interleukin 8-like chemokines [54117] (2 families) (S)
    form dimers with different dimerisation modes
  5. 2536144Family d.9.1.1: Interleukin 8-like chemokines [54118] (25 proteins)
  6. 2536468Protein automated matches [190403] (4 species)
    not a true protein

Species:

  1. 2536469Human (Homo sapiens) [TaxId:9606] [187277] (24 PDB entries)
    1. Domain for 2hdm:
    2. Domains for 2n54:
      1. 2536534Domain d2n54a_: 2n54 A: [277872]
        automated match to d1j9oa_
      2. 2536535Domain d2n54b_: 2n54 B: [277873]
        automated match to d1j9oa_
    3. Domains for 2nz1:
      1. 2536492Domain d2nz1d_: 2nz1 D: [148524]
        Other proteins in same PDB: d2nz1a_, d2nz1b_, d2nz1x_
        automated match to d1doma_
      2. 2536493Domain d2nz1e_: 2nz1 E: [148525]
        Other proteins in same PDB: d2nz1a_, d2nz1b_, d2nz1x_
        automated match to d1doma_
      3. 2536494Domain d2nz1y_: 2nz1 Y: [148527]
        Other proteins in same PDB: d2nz1a_, d2nz1b_, d2nz1x_
        automated match to d1doma_
    4. Domains for 2ra4:
      1. 2536470Domain d2ra4a_: 2ra4 A: [168029]
        automated match to d1doma_
        complexed with so4, tfa
      2. 2536471Domain d2ra4b_: 2ra4 B: [168030]
        automated match to d1doma_
        complexed with so4, tfa
    5. Domains for 2vxw:
      1. 2536472Domain d2vxwa1: 2vxw A:10-68 [168925]
        Other proteins in same PDB: d2vxwa2, d2vxwb2, d2vxwc2, d2vxwd2
        automated match to d1hrja_
      2. 2536473Domain d2vxwb1: 2vxw B:10-68 [168926]
        Other proteins in same PDB: d2vxwa2, d2vxwb2, d2vxwc2, d2vxwd2
        automated match to d1hrja_
      3. 2536474Domain d2vxwc1: 2vxw C:10-68 [168927]
        Other proteins in same PDB: d2vxwa2, d2vxwb2, d2vxwc2, d2vxwd2
        automated match to d1hrja_
      4. 2536475Domain d2vxwd1: 2vxw D:10-68 [168928]
        Other proteins in same PDB: d2vxwa2, d2vxwb2, d2vxwc2, d2vxwd2
        automated match to d1hrja_
    6. Domain for 3fpu:
    7. Domains for 3kbx:
      1. 2536495Domain d3kbxa_: 3kbx A: [179243]
        automated match to d1b50a_
        complexed with act, k
      2. 2536496Domain d3kbxb_: 3kbx B: [179244]
        automated match to d1b50a_
        complexed with act, k
      3. 2536497Domain d3kbxc_: 3kbx C: [179245]
        automated match to d1b50a_
        complexed with act, k
      4. 2536498Domain d3kbxd_: 3kbx D: [179246]
        automated match to d1b50a_
        complexed with act, k
      5. 2536499Domain d3kbxe_: 3kbx E: [179247]
        automated match to d1b50a_
        complexed with act, k
    8. Domain for 3ona:
    9. Domains for 3tn1:
      1. 2536511Domain d3tn1a1: 3tn1 A:3-69 [306564]
        Other proteins in same PDB: d3tn1a2, d3tn1b2, d3tn1d2, d3tn1e2
        automated match to d4ra8b_
        complexed with zn; mutant
      2. 2536512Domain d3tn1b1: 3tn1 B:3-69 [306566]
        Other proteins in same PDB: d3tn1a2, d3tn1b2, d3tn1d2, d3tn1e2
        automated match to d4ra8b_
        complexed with zn; mutant
      3. 2536513Domain d3tn1c_: 3tn1 C: [306568]
        Other proteins in same PDB: d3tn1a2, d3tn1b2, d3tn1d2, d3tn1e2
        automated match to d4ra8b_
        complexed with zn; mutant
      4. 2536514Domain d3tn1d1: 3tn1 D:3-69 [306569]
        Other proteins in same PDB: d3tn1a2, d3tn1b2, d3tn1d2, d3tn1e2
        automated match to d4ra8b_
        complexed with zn; mutant
      5. 2536515Domain d3tn1e1: 3tn1 E:3-69 [306571]
        Other proteins in same PDB: d3tn1a2, d3tn1b2, d3tn1d2, d3tn1e2
        automated match to d4ra8b_
        complexed with zn; mutant
    10. Domain for 3tn2:
    11. Domains for 4hsv:
      1. 2536482Domain d4hsva_: 4hsv A: [202466]
        automated match to d4hsvc_
      2. 2536483Domain d4hsvb_: 4hsv B: [202467]
        automated match to d4hsvc_
      3. 2536484Domain d4hsvc_: 4hsv C: [196784]
        automated match to d1f9qd_
      4. 2536485Domain d4hsvd_: 4hsv D: [202468]
        automated match to d4hsvc_
    12. Domains for 4r9w:
      1. 2536521Domain d4r9wa_: 4r9w A: [279930]
        automated match to d1f9qd_
        complexed with nto
      2. 2536522Domain d4r9wb_: 4r9w B: [279931]
        automated match to d1f9qd_
        complexed with nto
    13. Domains for 4ra8:
      1. 2536516Domain d4ra8a_: 4ra8 A: [260014]
        automated match to d1huna_
        mutant
      2. 2536517Domain d4ra8b_: 4ra8 B: [263837]
        mutant
      3. 2536518Domain d4ra8c_: 4ra8 C: [263838]
        mutant
      4. 2536519Domain d4ra8d_: 4ra8 D: [263839]
        mutant
      5. 2536520Domain d4ra8e_: 4ra8 E: [263840]
        mutant
    14. Domain for 4xt1:
    15. Domain for 4zk9:
    16. Domain for 4zkb:
    17. Domain for 4zkc:
    18. Domains for 5cor:
      1. 2536501Domain d5cora_: 5cor A: [315242]
        automated match to d4ra8b_
        complexed with act, hez
      2. 2536502Domain d5corb_: 5cor B: [315222]
        automated match to d4ra8b_
        complexed with act, hez
      3. 2536503Domain d5corc_: 5cor C: [315305]
        automated match to d4ra8b_
        complexed with act, hez
      4. 2536504Domain d5cord_: 5cor D: [315281]
        automated match to d4ra8b_
        complexed with act, hez
      5. 2536505Domain d5core_: 5cor E: [315225]
        automated match to d4ra8b_
        complexed with act, hez
      6. 2536506Domain d5corf_: 5cor F: [315223]
        automated match to d4ra8b_
        complexed with act, hez
      7. 2536507Domain d5corg_: 5cor G: [315221]
        automated match to d4ra8b_
        complexed with act, hez
      8. 2536508Domain d5corh_: 5cor H: [315571]
        automated match to d4ra8b_
        complexed with act, hez
      9. 2536509Domain d5cori_: 5cor I: [315257]
        automated match to d4ra8b_
        complexed with act, hez
      10. 2536510Domain d5corj_: 5cor J: [315266]
        automated match to d4ra8b_
        complexed with act, hez
    19. Domains for 5d65:
      1. 2536526Domain d5d65a_: 5d65 A: [316055]
        automated match to d4ra8b_
        complexed with bgc, cl, glc, ids, sgn
      2. 2536527Domain d5d65b_: 5d65 B: [316053]
        automated match to d4ra8b_
        complexed with bgc, cl, glc, ids, sgn
      3. 2536528Domain d5d65c_: 5d65 C: [316051]
        automated match to d4ra8b_
        complexed with bgc, cl, glc, ids, sgn
      4. 2536529Domain d5d65d_: 5d65 D: [316096]
        automated match to d4ra8b_
        complexed with bgc, cl, glc, ids, sgn
      5. 2536530Domain d5d65e_: 5d65 E: [316054]
        automated match to d4ra8b_
        complexed with bgc, cl, glc, ids, sgn
    20. Domain for 5ob5:
    21. Domains for 5ur7:
      1. 2536490Domain d5ur7a_: 5ur7 A: [341910]
        automated match to d1ha6a_
        complexed with act, ipa
      2. 2536491Domain d5ur7b_: 5ur7 B: [341909]
        automated match to d1ha6a_
        complexed with act, ipa
    22. Domains for 5wk3:
      1. 2536486Domain d5wk3a_: 5wk3 A: [343370]
        Other proteins in same PDB: d5wk3p1, d5wk3p2, d5wk3r1, d5wk3r2, d5wk3t1, d5wk3t2, d5wk3v1, d5wk3v2
        automated match to d1nr4e_
        complexed with gol
      2. 2536487Domain d5wk3b_: 5wk3 B: [343376]
        Other proteins in same PDB: d5wk3p1, d5wk3p2, d5wk3r1, d5wk3r2, d5wk3t1, d5wk3t2, d5wk3v1, d5wk3v2
        automated match to d1nr4e_
        complexed with gol
      3. 2536488Domain d5wk3c_: 5wk3 C: [343293]
        Other proteins in same PDB: d5wk3p1, d5wk3p2, d5wk3r1, d5wk3r2, d5wk3t1, d5wk3t2, d5wk3v1, d5wk3v2
        automated match to d1nr4e_
        complexed with gol
      4. 2536489Domain d5wk3d_: 5wk3 D: [343282]
        Other proteins in same PDB: d5wk3p1, d5wk3p2, d5wk3r1, d5wk3r2, d5wk3t1, d5wk3t2, d5wk3v1, d5wk3v2
        automated match to d1nr4e_
        complexed with gol
    23. Domains for 6aez:
      1. 2536478Domain d6aeza_: 6aez A: [372497]
        automated match to d1g91a_
        complexed with so4
      2. 2536479Domain d6aezb_: 6aez B: [372518]
        automated match to d1g91a_
        complexed with so4
      3. 2536480Domain d6aezc_: 6aez C: [372513]
        automated match to d1g91a_
        complexed with so4
    24. Domain for 6log:
  2. 2536536Human herpesvirus 8 strain gk18 [TaxId:868565] [269363] (1 PDB entry)
  3. 2536538Macaca fascicularis [TaxId:9541] [396173] (3 PDB entries)
    1. Domains for 6wzj:
      1. 2536543Domain d6wzje_: 6wzj E: [396225]
        Other proteins in same PDB: d6wzjb1, d6wzjb2, d6wzjd1, d6wzjd2
        automated match to d1mgsa_
      2. 2536544Domain d6wzjf_: 6wzj F: [396224]
        Other proteins in same PDB: d6wzjb1, d6wzjb2, d6wzjd1, d6wzjd2
        automated match to d1mgsa_
    2. Domains for 6wzk:
      1. 2536539Domain d6wzke_: 6wzk E: [396287]
        Other proteins in same PDB: d6wzkb1, d6wzkb2, d6wzkd1, d6wzkd2
        automated match to d1mgsa_
        complexed with act, edo, mg
      2. 2536540Domain d6wzkf_: 6wzk F: [396238]
        Other proteins in same PDB: d6wzkb1, d6wzkb2, d6wzkd1, d6wzkd2
        automated match to d1mgsa_
        complexed with act, edo, mg
    3. Domains for 6wzl:
      1. 2536541Domain d6wzle_: 6wzl E: [396189]
        Other proteins in same PDB: d6wzlb1, d6wzlb2, d6wzld1, d6wzld2
        automated match to d1mgsa_
        complexed with pg6
      2. 2536542Domain d6wzlf_: 6wzl F: [396174]
        Other proteins in same PDB: d6wzlb1, d6wzlb2, d6wzld1, d6wzld2
        automated match to d1mgsa_
        complexed with pg6
  4. 2536545Mouse (Mus musculus) [TaxId:10090] [188560] (2 PDB entries)
    1. Domains for 2r3z:
      1. 2536546Domain d2r3za1: 2r3z A:2-68 [167966]
        Other proteins in same PDB: d2r3za2, d2r3zb2
        automated match to d1o80a_
      2. 2536547Domain d2r3zb1: 2r3z B:2-67 [167967]
        Other proteins in same PDB: d2r3za2, d2r3zb2
        automated match to d1o80a_
      3. 2536548Domain d2r3zc_: 2r3z C: [167968]
        Other proteins in same PDB: d2r3za2, d2r3zb2
        automated match to d1o80a_
      4. 2536549Domain d2r3zd_: 2r3z D: [167969]
        Other proteins in same PDB: d2r3za2, d2r3zb2
        automated match to d1o80a_
    2. Domains for 5yam:
      1. 2536550Domain d5yama1: 5yam A:2-69 [357127]
        Other proteins in same PDB: d5yama2, d5yamb2
        automated match to d1g91a_
      2. 2536551Domain d5yamb1: 5yam B:2-69 [357147]
        Other proteins in same PDB: d5yama2, d5yamb2
        automated match to d1g91a_

More info for Protein automated matches from d.9.1.1: Interleukin 8-like chemokines

Timeline for Protein automated matches from d.9.1.1: Interleukin 8-like chemokines: