Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1815291Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1872996Fold c.73: Carbamate kinase-like [53632] (1 superfamily)
    3 layers: a/b/a; mixed (mainly parallel) beta-sheet of 8 strands, order 34215786; strand 8 is antiparallel to the rest
  4. 1872997Superfamily c.73.1: Carbamate kinase-like [53633] (4 families) (S)
    the sheet topology is similar to those of undecaprenyl diphosphate synthase and the N-terminal domain of phosphoglycerate kinase
  5. 1873059Family c.73.1.3: PyrH-like [142721] (4 proteins)
    part of Pfam PF00696
  6. 1873102Protein automated matches [190400] (4 species)
    not a true protein

Species:

  1. 1873103Escherichia coli K-12 [TaxId:83333] [187271] (3 PDB entries)
    1. Domains for 2bne:
      1. 1873104Domain d2bnea_: 2bne A: [128824]
        automated match to d2bnea1
        complexed with gol, u5p
      2. 1873105Domain d2bneb_: 2bne B: [128825]
        automated match to d2bnea1
        complexed with gol, u5p
    2. Domains for 2bnf:
      1. 1873106Domain d2bnfa_: 2bnf A: [128826]
        automated match to d2bnea1
        complexed with gol, utp
      2. 1873107Domain d2bnfb_: 2bnf B: [128827]
        automated match to d2bnea1
        complexed with gol, utp
    3. Domains for 2v4y:
      1. 1873108Domain d2v4ya_: 2v4y A: [152570]
        automated match to d2bnea1
        complexed with gtp
      2. 1873109Domain d2v4yb_: 2v4y B: [152571]
        automated match to d2bnea1
        complexed with gtp
      3. 1873110Domain d2v4yc_: 2v4y C: [152572]
        automated match to d2bnea1
        complexed with gtp
      4. 1873111Domain d2v4yd_: 2v4y D: [152573]
        automated match to d2bnea1
        complexed with gtp
      5. 1873112Domain d2v4ye_: 2v4y E: [152574]
        automated match to d2bnea1
        complexed with gtp
      6. 1873113Domain d2v4yf_: 2v4y F: [152575]
        automated match to d2bnea1
        complexed with gtp
  2. 1873114Escherichia coli [TaxId:562] [187476] (1 PDB entry)
  3. 1873116Methanocaldococcus jannaschii [TaxId:2190] [255767] (3 PDB entries)
    1. Domains for 3c1m:
      1. 1873117Domain d3c1ma1: 3c1m A:2-303 [245412]
        Other proteins in same PDB: d3c1ma2, d3c1ma3, d3c1mb2, d3c1mb3, d3c1mc2, d3c1mc3, d3c1md2, d3c1md3
        automated match to d2hmfa1
        complexed with anp, asp, fmt, mg
      2. 1873118Domain d3c1mb1: 3c1m B:2-303 [245415]
        Other proteins in same PDB: d3c1ma2, d3c1ma3, d3c1mb2, d3c1mb3, d3c1mc2, d3c1mc3, d3c1md2, d3c1md3
        automated match to d2hmfa1
        complexed with anp, asp, fmt, mg
      3. 1873119Domain d3c1mc1: 3c1m C:2-303 [245418]
        Other proteins in same PDB: d3c1ma2, d3c1ma3, d3c1mb2, d3c1mb3, d3c1mc2, d3c1mc3, d3c1md2, d3c1md3
        automated match to d2hmfa1
        complexed with anp, asp, fmt, mg
      4. 1873120Domain d3c1md1: 3c1m D:2-303 [245421]
        Other proteins in same PDB: d3c1ma2, d3c1ma3, d3c1mb2, d3c1mb3, d3c1mc2, d3c1mc3, d3c1md2, d3c1md3
        automated match to d2hmfa1
        complexed with anp, asp, fmt, mg
    2. Domains for 3c1n:
      1. 1873123Domain d3c1na1: 3c1n A:2-302 [245424]
        Other proteins in same PDB: d3c1na2, d3c1na3, d3c1nb2, d3c1nb3, d3c1nc2, d3c1nc3, d3c1nd2, d3c1nd3
        automated match to d2hmfa1
        complexed with thr
      2. 1873124Domain d3c1nb1: 3c1n B:2-301 [245427]
        Other proteins in same PDB: d3c1na2, d3c1na3, d3c1nb2, d3c1nb3, d3c1nc2, d3c1nc3, d3c1nd2, d3c1nd3
        automated match to d2hmfa1
        complexed with thr
      3. 1873125Domain d3c1nc1: 3c1n C:2-302 [245430]
        Other proteins in same PDB: d3c1na2, d3c1na3, d3c1nb2, d3c1nb3, d3c1nc2, d3c1nc3, d3c1nd2, d3c1nd3
        automated match to d2hmfa1
        complexed with thr
      4. 1873126Domain d3c1nd1: 3c1n D:3-300 [245433]
        Other proteins in same PDB: d3c1na2, d3c1na3, d3c1nb2, d3c1nb3, d3c1nc2, d3c1nc3, d3c1nd2, d3c1nd3
        automated match to d2hmfa1
        complexed with thr
    3. Domains for 3c20:
      1. 1873121Domain d3c20a1: 3c20 A:2-303 [245440]
        Other proteins in same PDB: d3c20a2, d3c20a3, d3c20b2, d3c20b3
        automated match to d2hmfa1
        complexed with asp, fmt
      2. 1873122Domain d3c20b1: 3c20 B:2-303 [245443]
        Other proteins in same PDB: d3c20a2, d3c20a3, d3c20b2, d3c20b3
        automated match to d2hmfa1
        complexed with asp, fmt
  4. 1873127Pyrococcus furiosus [TaxId:2261] [187472] (4 PDB entries)
    1. Domains for 2bmu:
      1. 1873131Domain d2bmua_: 2bmu A: [128813]
        automated match to d2bmua1
        complexed with anp, mg, u5p
      2. 1873132Domain d2bmub_: 2bmu B: [128814]
        automated match to d2bmua1
        complexed with anp, mg, u5p
    2. Domains for 2bri:
      1. 1873133Domain d2bria_: 2bri A: [128999]
        automated match to d2bmub_
        complexed with anp, mg
      2. 1873134Domain d2brib_: 2bri B: [129000]
        automated match to d2bmub_
        complexed with anp, mg
    3. Domain for 2brx:
    4. Domains for 2ji5:
      1. 1873129Domain d2ji5a_: 2ji5 A: [166206]
        automated match to d2bmua1
        complexed with utp
      2. 1873130Domain d2ji5b_: 2ji5 B: [166207]
        automated match to d2bmua1
        complexed with utp

More info for Protein automated matches from c.73.1.3: PyrH-like

Timeline for Protein automated matches from c.73.1.3: PyrH-like: