Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1815291Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1866060Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
    main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest
  4. 1866061Superfamily c.67.1: PLP-dependent transferases [53383] (10 families) (S)
  5. 1866508Family c.67.1.3: Cystathionine synthase-like [53402] (17 proteins)
  6. 1866700Protein automated matches [190399] (9 species)
    not a true protein

Species:

  1. 1866701Citrobacter freundii [TaxId:1288347] [260926] (1 PDB entry)
  2. 1866703Citrobacter freundii [TaxId:546] [261234] (1 PDB entry)
  3. 1866705Escherichia coli [TaxId:155864] [255940] (3 PDB entries)
    1. Domains for 3lvj:
      1. 1866709Domain d3lvja_: 3lvj A: [239434]
        Other proteins in same PDB: d3lvjc_, d3lvjd_
        automated match to d1p3wa_
        protein/RNA complex; complexed with plp
      2. 1866710Domain d3lvjb_: 3lvj B: [239435]
        Other proteins in same PDB: d3lvjc_, d3lvjd_
        automated match to d1p3wa_
        protein/RNA complex; complexed with plp
    2. Domain for 3lvk:
    3. Domains for 3lvm:
      1. 1866706Domain d3lvma_: 3lvm A: [247521]
        automated match to d1p3wa_
        complexed with plp
      2. 1866707Domain d3lvmb_: 3lvm B: [247522]
        automated match to d1p3wa_
        complexed with plp
  4. 1866711Escherichia coli [TaxId:562] [255941] (1 PDB entry)
  5. 1866713Human (Homo sapiens) [TaxId:9606] [189951] (7 PDB entries)
    1. Domains for 2yob:
      1. 1866714Domain d2yoba_: 2yob A: [231661]
        automated match to d2yobb_
        complexed with btb, gol, plp, so4
      2. 1866715Domain d2yobb_: 2yob B: [228745]
        automated match to d3kgwb_
        complexed with btb, gol, plp, so4
    2. Domains for 3r9a:
      1. 1866716Domain d3r9aa_: 3r9a A: [184855]
        Other proteins in same PDB: d3r9ab_, d3r9ad_
        automated match to d1h0ca_
        complexed with btb
      2. 1866717Domain d3r9ac_: 3r9a C: [184857]
        Other proteins in same PDB: d3r9ab_, d3r9ad_
        automated match to d1h0ca_
        complexed with btb
    3. Domain for 4cbr:
    4. Domain for 4cbs:
    5. Domains for 4i8a:
      1. 1866724Domain d4i8aa_: 4i8a A: [196965]
        automated match to d3r9ac_
        complexed with gol
      2. 1866725Domain d4i8ab_: 4i8a B: [202593]
        automated match to d4i8aa_
        complexed with gol
      3. 1866726Domain d4i8ac_: 4i8a C: [202594]
        automated match to d4i8aa_
        complexed with gol
      4. 1866727Domain d4i8ad_: 4i8a D: [202595]
        automated match to d4i8aa_
        complexed with gol
    6. Domains for 4kxk:
      1. 1866722Domain d4kxka_: 4kxk A: [261079]
        Other proteins in same PDB: d4kxkb_, d4kxkd_
        automated match to d3r9ac_
        complexed with bme, so4
      2. 1866723Domain d4kxkc_: 4kxk C: [261080]
        Other proteins in same PDB: d4kxkb_, d4kxkd_
        automated match to d3r9ac_
        complexed with bme, so4
    7. Domains for 4kyo:
      1. 1866718Domain d4kyoa_: 4kyo A: [261083]
        Other proteins in same PDB: d4kyob_, d4kyod_
        automated match to d3r9ac_
        complexed with bme, btb, so4
      2. 1866719Domain d4kyoc_: 4kyo C: [261082]
        Other proteins in same PDB: d4kyob_, d4kyod_
        automated match to d3r9ac_
        complexed with bme, btb, so4
  6. 1866728Mouse (Mus musculus) [TaxId:10090] [189108] (2 PDB entries)
    1. Domains for 3kgw:
      1. 1866729Domain d3kgwa_: 3kgw A: [179364]
        automated match to d1h0ca_
        complexed with cl, edo, plp
      2. 1866730Domain d3kgwb_: 3kgw B: [179365]
        automated match to d1h0ca_
        complexed with cl, edo, plp
    2. Domains for 3kgx:
      1. 1866731Domain d3kgxa_: 3kgx A: [179366]
        automated match to d1h0ca_
        complexed with cl, edo, mg
      2. 1866732Domain d3kgxb_: 3kgx B: [179367]
        automated match to d1h0ca_
        complexed with cl, edo, mg
  7. 1866733Pseudomonas putida [TaxId:303] [187269] (4 PDB entries)
    1. Domains for 2o7c:
      1. 1866734Domain d2o7ca_: 2o7c A: [148663]
        automated match to d1pg8a_
        complexed with so4
      2. 1866735Domain d2o7cb_: 2o7c B: [148664]
        automated match to d1pg8a_
        complexed with so4
      3. 1866736Domain d2o7cc_: 2o7c C: [148665]
        automated match to d1pg8a_
        complexed with so4
      4. 1866737Domain d2o7cd_: 2o7c D: [148666]
        automated match to d1pg8a_
        complexed with so4
    2. Domains for 3vk2:
      1. 1866742Domain d3vk2a_: 3vk2 A: [194670]
        automated match to d1ukja_
        complexed with so4; mutant
      2. 1866743Domain d3vk2b_: 3vk2 B: [194669]
        automated match to d1ukja_
        complexed with so4; mutant
      3. 1866744Domain d3vk2c_: 3vk2 C: [194668]
        automated match to d1ukja_
        complexed with so4; mutant
      4. 1866745Domain d3vk2d_: 3vk2 D: [194671]
        automated match to d1ukja_
        complexed with so4; mutant
    3. Domains for 3vk3:
      1. 1866738Domain d3vk3a_: 3vk3 A: [194675]
        automated match to d1ukja_
        complexed with met; mutant
      2. 1866739Domain d3vk3b_: 3vk3 B: [194673]
        automated match to d1ukja_
        complexed with met; mutant
      3. 1866740Domain d3vk3c_: 3vk3 C: [194672]
        automated match to d1ukja_
        complexed with met; mutant
      4. 1866741Domain d3vk3d_: 3vk3 D: [194674]
        automated match to d1ukja_
        complexed with met; mutant
    4. Domains for 3vk4:
      1. 1866746Domain d3vk4a_: 3vk4 A: [194665]
        automated match to d1ukja_
        complexed with hcs; mutant
      2. 1866747Domain d3vk4b_: 3vk4 B: [194666]
        automated match to d1ukja_
        complexed with hcs; mutant
      3. 1866748Domain d3vk4c_: 3vk4 C: [194664]
        automated match to d1ukja_
        complexed with hcs; mutant
      4. 1866749Domain d3vk4d_: 3vk4 D: [194667]
        automated match to d1ukja_
        complexed with hcs; mutant
  8. 1866750Thale cress (Arabidopsis thaliana) [TaxId:3702] [259476] (2 PDB entries)
    1. Domains for 4q75:
      1. 1866751Domain d4q75a_: 4q75 A: [259477]
        automated match to d1t3ia_
      2. 1866752Domain d4q75b_: 4q75 B: [259970]
        automated match to d1t3ia_
    2. Domains for 4q76:
      1. 1866753Domain d4q76a_: 4q76 A: [259478]
        automated match to d1t3ia_
        mutant
      2. 1866754Domain d4q76b_: 4q76 B: [259479]
        automated match to d1t3ia_
        mutant
  9. 1866755Thermus thermophilus [TaxId:274] [187566] (1 PDB entry)

More info for Protein automated matches from c.67.1.3: Cystathionine synthase-like

Timeline for Protein automated matches from c.67.1.3: Cystathionine synthase-like: