Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1755445Class b: All beta proteins [48724] (176 folds)
  3. 1807020Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
    one turn of helix is made by two pairs of antiparallel strands linked with short turns
    has appearance of a sandwich of distinct architecture and jelly-roll topology
  4. 1807021Superfamily b.82.1: RmlC-like cupins [51182] (25 families) (S)
  5. 1807602Family b.82.1.0: automated matches [191354] (1 protein)
    not a true family
  6. 1807603Protein automated matches [190388] (20 species)
    not a true protein

Species:

  1. 1807604Acinetobacter sp. [TaxId:62977] [188944] (1 PDB entry)
  2. 1807606Bacillus anthracis [TaxId:198094] [226138] (1 PDB entry)
  3. 1807609Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [187242] (1 PDB entry)
  4. 1807611Branchiostoma belcheri [TaxId:155462] [189354] (2 PDB entries)
    1. Domain for 3loi:
    2. Domains for 3lzz:
      1. 1807613Domain d3lzza_: 3lzz A: [180676]
        automated match to d1yuda1
        complexed with act, gdp
      2. 1807614Domain d3lzzb_: 3lzz B: [180677]
        automated match to d1yuda1
        complexed with act, gdp
  5. 1807615Clostridium difficile [TaxId:272563] [256193] (1 PDB entry)
  6. 1807618Desulfitobacterium hafniense [TaxId:272564] [187970] (1 PDB entry)
  7. 1807621Escherichia coli [TaxId:562] [225481] (1 PDB entry)
  8. 1807623Granulicella tundricola [TaxId:1198114] [256205] (1 PDB entry)
  9. 1807632Granulicella tundricola [TaxId:940615] [268964] (1 PDB entry)
  10. 1807653Leptotrichia buccalis [TaxId:523794] [256062] (1 PDB entry)
  11. 1807656Mung bean (Vigna radiata) [TaxId:157791] [225082] (1 PDB entry)
  12. 1807659Pinus koraiensis [TaxId:88728] [236190] (1 PDB entry)
  13. 1807662Pseudomonas fluorescens [TaxId:216595] [189073] (1 PDB entry)
  14. 1807665Pseudomonas putida [TaxId:160488] [196877] (3 PDB entries)
    1. Domains for 3zds:
      1. 1807666Domain d3zdsa_: 3zds A: [218259]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
      2. 1807667Domain d3zdsb_: 3zds B: [218260]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
      3. 1807668Domain d3zdsc_: 3zds C: [218261]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
      4. 1807669Domain d3zdsd_: 3zds D: [218262]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
      5. 1807670Domain d3zdse_: 3zds E: [218263]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
      6. 1807671Domain d3zdsf_: 3zds F: [218264]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
      7. 1807672Domain d3zdsg_: 3zds G: [218265]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
      8. 1807673Domain d3zdsh_: 3zds H: [218266]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
      9. 1807674Domain d3zdsi_: 3zds I: [218267]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
      10. 1807675Domain d3zdsj_: 3zds J: [218268]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
      11. 1807676Domain d3zdsk_: 3zds K: [218269]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
      12. 1807677Domain d3zdsl_: 3zds L: [218270]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
    2. Domains for 4aq2:
      1. 1807690Domain d4aq2a_: 4aq2 A: [219098]
        automated match to d4aq6a_
        complexed with b3p, fe
      2. 1807691Domain d4aq2b_: 4aq2 B: [219099]
        automated match to d4aq6a_
        complexed with b3p, fe
      3. 1807692Domain d4aq2c_: 4aq2 C: [219100]
        automated match to d4aq6a_
        complexed with b3p, fe
      4. 1807693Domain d4aq2d_: 4aq2 D: [219101]
        automated match to d4aq6a_
        complexed with b3p, fe
      5. 1807694Domain d4aq2e_: 4aq2 E: [219102]
        automated match to d4aq6a_
        complexed with b3p, fe
      6. 1807695Domain d4aq2f_: 4aq2 F: [219103]
        automated match to d4aq6a_
        complexed with b3p, fe
      7. 1807696Domain d4aq2g_: 4aq2 G: [219104]
        automated match to d4aq6a_
        complexed with b3p, fe
      8. 1807697Domain d4aq2h_: 4aq2 H: [219105]
        automated match to d4aq6a_
        complexed with b3p, fe
      9. 1807698Domain d4aq2i_: 4aq2 I: [219106]
        automated match to d4aq6a_
        complexed with b3p, fe
      10. 1807699Domain d4aq2j_: 4aq2 J: [219107]
        automated match to d4aq6a_
        complexed with b3p, fe
      11. 1807700Domain d4aq2k_: 4aq2 K: [219108]
        automated match to d4aq6a_
        complexed with b3p, fe
      12. 1807701Domain d4aq2l_: 4aq2 L: [219109]
        automated match to d4aq6a_
        complexed with b3p, fe
    3. Domains for 4aq6:
      1. 1807678Domain d4aq6a_: 4aq6 A: [196878]
        automated match to d1eyba_
        complexed with b3p, fe, omd
      2. 1807679Domain d4aq6b_: 4aq6 B: [196879]
        automated match to d1eyba_
        complexed with b3p, fe, omd
      3. 1807680Domain d4aq6c_: 4aq6 C: [201500]
        automated match to d4aq6a_
        complexed with b3p, fe, omd
      4. 1807681Domain d4aq6d_: 4aq6 D: [201501]
        automated match to d4aq6a_
        complexed with b3p, fe, omd
      5. 1807682Domain d4aq6e_: 4aq6 E: [201502]
        automated match to d4aq6a_
        complexed with b3p, fe, omd
      6. 1807683Domain d4aq6f_: 4aq6 F: [201503]
        automated match to d4aq6a_
        complexed with b3p, fe, omd
      7. 1807684Domain d4aq6g_: 4aq6 G: [201504]
        automated match to d4aq6a_
        complexed with b3p, fe, omd
      8. 1807685Domain d4aq6h_: 4aq6 H: [201505]
        automated match to d4aq6a_
        complexed with b3p, fe, omd
      9. 1807686Domain d4aq6i_: 4aq6 I: [201506]
        automated match to d4aq6a_
        complexed with b3p, fe, omd
      10. 1807687Domain d4aq6j_: 4aq6 J: [201507]
        automated match to d4aq6a_
        complexed with b3p, fe, omd
      11. 1807688Domain d4aq6k_: 4aq6 K: [201508]
        automated match to d4aq6a_
        complexed with b3p, fe, omd
      12. 1807689Domain d4aq6l_: 4aq6 L: [201509]
        automated match to d4aq6a_
        complexed with b3p, fe, omd
  15. 1807702Pumpkin (Cucurbita maxima) [TaxId:3661] [225177] (2 PDB entries)
    1. Domains for 2e9q:
      1. 1807703Domain d2e9qa1: 2e9q A:26-254 [204082]
        automated match to d1fxza1
        complexed with cl, po4
      2. 1807704Domain d2e9qa2: 2e9q A:281-453 [204083]
        automated match to d1fxza2
        complexed with cl, po4
    2. Domains for 2evx:
      1. 1807705Domain d2evxa1: 2evx A:26-253 [204143]
        automated match to d1fxza1
        complexed with mg
      2. 1807706Domain d2evxa2: 2evx A:281-453 [204144]
        automated match to d1fxza2
        complexed with mg
  16. 1807707Soybean (Glycine max) [TaxId:3847] [225175] (2 PDB entries)
    1. Domains for 2d5f:
      1. 1807708Domain d2d5fa1: 2d5f A:7-249 [203922]
        automated match to d1fxza1
        complexed with co3, mg
      2. 1807709Domain d2d5fa2: 2d5f A:326-493 [203923]
        automated match to d1fxza2
        complexed with co3, mg
      3. 1807710Domain d2d5fb1: 2d5f B:7-249 [203924]
        automated match to d1fxza1
        complexed with co3, mg
      4. 1807711Domain d2d5fb2: 2d5f B:326-493 [203925]
        automated match to d1fxza2
        complexed with co3, mg
    2. Domains for 2d5h:
      1. 1807712Domain d2d5ha1: 2d5h A:6-248 [203926]
        automated match to d1fxza1
        complexed with co3, mg
      2. 1807713Domain d2d5ha2: 2d5h A:326-493 [203927]
        automated match to d1fxza2
        complexed with co3, mg
      3. 1807714Domain d2d5hb1: 2d5h B:6-248 [203928]
        automated match to d1fxza1
        complexed with co3, mg
      4. 1807715Domain d2d5hb2: 2d5h B:326-493 [203929]
        automated match to d1fxza2
        complexed with co3, mg
      5. 1807716Domain d2d5hc1: 2d5h C:6-247 [203930]
        automated match to d1fxza1
        complexed with co3, mg
      6. 1807717Domain d2d5hc2: 2d5h C:326-493 [203931]
        automated match to d1fxza2
        complexed with co3, mg
      7. 1807718Domain d2d5hd1: 2d5h D:6-247 [203932]
        automated match to d1fxza1
        complexed with co3, mg
      8. 1807719Domain d2d5hd2: 2d5h D:326-493 [203933]
        automated match to d1fxza2
        complexed with co3, mg
      9. 1807720Domain d2d5he1: 2d5h E:1-248 [203934]
        automated match to d1fxza1
        complexed with co3, mg
      10. 1807721Domain d2d5he2: 2d5h E:326-493 [203935]
        automated match to d1fxza2
        complexed with co3, mg
      11. 1807722Domain d2d5hf1: 2d5h F:6-248 [203936]
        automated match to d1fxza1
        complexed with co3, mg
      12. 1807723Domain d2d5hf2: 2d5h F:326-493 [203937]
        automated match to d1fxza2
        complexed with co3, mg
  17. 1807724Streptomyces bikiniensis [TaxId:1896] [193359] (3 PDB entries)
    1. Domains for 4hmz:
      1. 1807729Domain d4hmza_: 4hmz A: [202447]
        automated match to d4hmzb_
        complexed with 18t, edo
      2. 1807730Domain d4hmzb_: 4hmz B: [193361]
        automated match to d2c0za1
        complexed with 18t, edo
      3. 1807731Domain d4hmzc_: 4hmz C: [202448]
        automated match to d4hmzb_
        complexed with 18t, edo
      4. 1807732Domain d4hmzd_: 4hmz D: [202449]
        automated match to d4hmzb_
        complexed with 18t, edo
    2. Domains for 4hn0:
      1. 1807733Domain d4hn0a_: 4hn0 A: [194294]
        automated match to d2c0za1
        complexed with cl, edo
      2. 1807734Domain d4hn0b_: 4hn0 B: [202450]
        automated match to d4hn0c_
        complexed with cl, edo
      3. 1807735Domain d4hn0c_: 4hn0 C: [194292]
        automated match to d2c0za1
        complexed with cl, edo
      4. 1807736Domain d4hn0d_: 4hn0 D: [194293]
        automated match to d2c0za1
        complexed with cl, edo
    3. Domains for 4hn1:
      1. 1807725Domain d4hn1a_: 4hn1 A: [193360]
        automated match to d2c0za1
        complexed with edo, tdr, thm, tyd; mutant
      2. 1807726Domain d4hn1b_: 4hn1 B: [202451]
        automated match to d4hn1a_
        complexed with edo, tdr, thm, tyd; mutant
      3. 1807727Domain d4hn1c_: 4hn1 C: [202452]
        automated match to d4hn1a_
        complexed with edo, tdr, thm, tyd; mutant
      4. 1807728Domain d4hn1d_: 4hn1 D: [202453]
        automated match to d4hn1a_
        complexed with edo, tdr, thm, tyd; mutant
  18. 1807737Thale cress (Arabidopsis thaliana) [TaxId:3702] [226353] (2 PDB entries)
    1. Domains for 4e2q:
      1. 1807754Domain d4e2qa_: 4e2q A: [220193]
        automated match to d1sfna_
        complexed with mn
      2. 1807755Domain d4e2qb_: 4e2q B: [220194]
        automated match to d1sfna_
        complexed with mn
      3. 1807756Domain d4e2qc_: 4e2q C: [220195]
        automated match to d1sfna_
        complexed with mn
      4. 1807757Domain d4e2qd_: 4e2q D: [220196]
        automated match to d1sfna_
        complexed with mn
      5. 1807758Domain d4e2qe_: 4e2q E: [220197]
        automated match to d1sfna_
        complexed with mn
      6. 1807759Domain d4e2qf_: 4e2q F: [220198]
        automated match to d1sfna_
        complexed with mn
      7. 1807760Domain d4e2qg_: 4e2q G: [220199]
        automated match to d1sfna_
        complexed with mn
      8. 1807761Domain d4e2qh_: 4e2q H: [220200]
        automated match to d1sfna_
        complexed with mn
      9. 1807762Domain d4e2qi_: 4e2q I: [220201]
        automated match to d1sfna_
        complexed with mn
      10. 1807763Domain d4e2qj_: 4e2q J: [220202]
        automated match to d1sfna_
        complexed with mn
      11. 1807764Domain d4e2qk_: 4e2q K: [220203]
        automated match to d1sfna_
        complexed with mn
      12. 1807765Domain d4e2ql_: 4e2q L: [220204]
        automated match to d1sfna_
        complexed with mn
      13. 1807766Domain d4e2qm_: 4e2q M: [220205]
        automated match to d1sfna_
        complexed with mn
      14. 1807767Domain d4e2qn_: 4e2q N: [220206]
        automated match to d1sfna_
        complexed with mn
      15. 1807768Domain d4e2qo_: 4e2q O: [220207]
        automated match to d1sfna_
        complexed with mn
      16. 1807769Domain d4e2qp_: 4e2q P: [220208]
        automated match to d1sfna_
        complexed with mn
    2. Domains for 4e2s:
      1. 1807738Domain d4e2sa_: 4e2s A: [220209]
        automated match to d1sfna_
        complexed with mn, ugy
      2. 1807739Domain d4e2sb_: 4e2s B: [220210]
        automated match to d1sfna_
        complexed with mn, ugy
      3. 1807740Domain d4e2sc_: 4e2s C: [220211]
        automated match to d1sfna_
        complexed with mn, ugy
      4. 1807741Domain d4e2sd_: 4e2s D: [220212]
        automated match to d1sfna_
        complexed with mn, ugy
      5. 1807742Domain d4e2se_: 4e2s E: [220213]
        automated match to d1sfna_
        complexed with mn, ugy
      6. 1807743Domain d4e2sf_: 4e2s F: [220214]
        automated match to d1sfna_
        complexed with mn, ugy
      7. 1807744Domain d4e2sg_: 4e2s G: [220215]
        automated match to d1sfna_
        complexed with mn, ugy
      8. 1807745Domain d4e2sh_: 4e2s H: [220216]
        automated match to d1sfna_
        complexed with mn, ugy
      9. 1807746Domain d4e2si_: 4e2s I: [220217]
        automated match to d1sfna_
        complexed with mn, ugy
      10. 1807747Domain d4e2sj_: 4e2s J: [220218]
        automated match to d1sfna_
        complexed with mn, ugy
      11. 1807748Domain d4e2sk_: 4e2s K: [220219]
        automated match to d1sfna_
        complexed with mn, ugy
      12. 1807749Domain d4e2sl_: 4e2s L: [220220]
        automated match to d1sfna_
        complexed with mn, ugy
      13. 1807750Domain d4e2sm_: 4e2s M: [220221]
        automated match to d1sfna_
        complexed with mn, ugy
      14. 1807751Domain d4e2sn_: 4e2s N: [220222]
        automated match to d1sfna_
        complexed with mn, ugy
      15. 1807752Domain d4e2so_: 4e2s O: [220223]
        automated match to d1sfna_
        complexed with mn, ugy
      16. 1807753Domain d4e2sp_: 4e2s P: [220224]
        automated match to d1sfna_
        complexed with mn, ugy
  19. 1807770Thermoanaerobacterium thermosaccharolyticum [TaxId:1517] [238466] (3 PDB entries)
    1. Domains for 4o9e:
      1. 1807773Domain d4o9ea_: 4o9e A: [240673]
        automated match to d4o9eb_
        complexed with 4td, tdr, tyd
      2. 1807774Domain d4o9eb_: 4o9e B: [238467]
        automated match to d2pa7b_
        complexed with 4td, tdr, tyd
    2. Domains for 4o9g:
      1. 1807771Domain d4o9ga_: 4o9g A: [238468]
        automated match to d2paea1
        complexed with 4td, edo, t46; mutant
      2. 1807772Domain d4o9gb_: 4o9g B: [238469]
        automated match to d2paea1
        complexed with 4td, edo, t46; mutant
    3. Domains for 4zu7:
      1. 1807775Domain d4zu7a_: 4zu7 A: [275140]
        automated match to d4o9ga_
        complexed with pxn, tyd; mutant
      2. 1807776Domain d4zu7b_: 4zu7 B: [275139]
        automated match to d4o9ga_
        complexed with pxn, tyd; mutant
      3. 1807777Domain d4zu7c_: 4zu7 C: [275142]
        automated match to d4o9ga_
        complexed with pxn, tyd; mutant
      4. 1807778Domain d4zu7d_: 4zu7 D: [275141]
        automated match to d4o9ga_
        complexed with pxn, tyd; mutant
      5. 1807779Domain d4zu7e_: 4zu7 E: [275145]
        automated match to d4o9ga_
        complexed with pxn, tyd; mutant
      6. 1807780Domain d4zu7f_: 4zu7 F: [275146]
        automated match to d4o9ga_
        complexed with pxn, tyd; mutant
      7. 1807781Domain d4zu7g_: 4zu7 G: [275144]
        automated match to d4o9ga_
        complexed with pxn, tyd; mutant
      8. 1807782Domain d4zu7h_: 4zu7 H: [275143]
        automated match to d4o9ga_
        complexed with pxn, tyd; mutant
  20. 1807783Yersinia enterocolitica [TaxId:393305] [275567] (1 PDB entry)

More info for Protein automated matches from b.82.1.0: automated matches

Timeline for Protein automated matches from b.82.1.0: automated matches: