Lineage for Protein: automated matches

  1. Root: SCOPe 2.01
  2. 929298Class b: All beta proteins [48724] (174 folds)
  3. 952974Fold b.47: Trypsin-like serine proteases [50493] (1 superfamily)
    barrel, closed; n=6, S=8; greek-key
    duplication: consists of two domains of the same fold
  4. 952975Superfamily b.47.1: Trypsin-like serine proteases [50494] (5 families) (S)
  5. 954798Family b.47.1.4: Viral cysteine protease of trypsin fold [50603] (4 proteins)
  6. 954950Protein automated matches [190384] (8 species)
    not a true protein

Species:

  1. 954951Coxsackievirus b3 [TaxId:103903] [188647] (1 PDB entry)
  2. 954953Foot-and-mouth disease virus (strain a10-61) [TaxId:12112] [187901] (1 PDB entry)
  3. 954955Foot-and-mouth disease virus [TaxId:12110] [187460] (1 PDB entry)
  4. 954957Foot-and-mouth disease virus [TaxId:12112] [189099] (2 PDB entries)
    1. Domains for 2wv4:
      1. 954958Domain d2wv4a_: 2wv4 A: [169651]
        automated match to d2j92a1
      2. 954959Domain d2wv4b_: 2wv4 B: [169652]
        automated match to d2j92a1
    2. Domains for 2wv5:
      1. 954960Domain d2wv5a_: 2wv5 A: [169653]
        automated match to d2j92a1
      2. 954961Domain d2wv5b_: 2wv5 B: [169654]
        automated match to d2j92a1
      3. 954962Domain d2wv5c_: 2wv5 C: [169655]
        automated match to d2j92a1
      4. 954963Domain d2wv5d_: 2wv5 D: [169656]
        automated match to d2j92a1
  5. 954964Human coxsackievirus B3 [TaxId:12072] [188738] (3 PDB entries)
    1. Domain for 2ztx:
    2. Domain for 2zty:
    3. Domains for 2ztz:
      1. 954966Domain d2ztza_: 2ztz A: [171521]
        automated match to d1l1na_
      2. 954967Domain d2ztzb_: 2ztz B: [171522]
        automated match to d1l1na_
  6. 954969Human coxsackievirus [TaxId:12072] [188739] (1 PDB entry)
  7. 954971Human sars coronavirus [TaxId:227859] [187234] (1 PDB entry)
  8. 954974SARS coronavirus [TaxId:227859] [187411] (12 PDB entries)
    1. Domains for 1wof:
      1. 954977Domain d1wofa_: 1wof A: [161971]
        automated match to d1uj1b_
        complexed with i12
      2. 954978Domain d1wofb_: 1wof B: [161972]
        automated match to d1uj1b_
        complexed with i12
    2. Domains for 2amd:
      1. 954975Domain d2amda_: 2amd A: [162828]
        automated match to d1uj1b_
        complexed with 9in
      2. 954976Domain d2amdb_: 2amd B: [162829]
        automated match to d1uj1b_
        complexed with 9in
    3. Domains for 2amq:
      1. 954980Domain d2amqa_: 2amq A: [162832]
        automated match to d1uj1b_
        complexed with 3ih
      2. 954981Domain d2amqb_: 2amq B: [162833]
        automated match to d1uj1b_
        complexed with 3ih
    4. Domains for 2d2d:
      1. 954994Domain d2d2da_: 2d2d A: [163557]
        automated match to d1uj1b_
        complexed with enb
      2. 954995Domain d2d2db_: 2d2d B: [163558]
        automated match to d1uj1b_
        complexed with enb
    5. Domains for 2yy4:
      1. 954982Domain d2yy4a_: 2yy4 A: [170921]
        automated match to d1uj1b_
      2. 954983Domain d2yy4b_: 2yy4 B: [170922]
        automated match to d1uj1b_
    6. Domains for 3e91:
      1. 954985Domain d3e91a_: 3e91 A: [174764]
        automated match to d1uj1b_
        mutant
      2. 954986Domain d3e91b_: 3e91 B: [174765]
        automated match to d1uj1b_
        mutant
    7. Domains for 3ea7:
      1. 954987Domain d3ea7a_: 3ea7 A: [174793]
        automated match to d1uj1b_
        mutant
      2. 954988Domain d3ea7b_: 3ea7 B: [174794]
        automated match to d1uj1b_
        mutant
    8. Domain for 3ea8:
    9. Domain for 3ea9:
    10. Domains for 3eaj:
      1. 954989Domain d3eaja_: 3eaj A: [174805]
        automated match to d1uj1b_
        mutant
      2. 954990Domain d3eajb_: 3eaj B: [174806]
        automated match to d1uj1b_
        mutant
    11. Domain for 3m3t:
    12. Domains for 3m3v:
      1. 954991Domain d3m3va_: 3m3v A: [180807]
        automated match to d1uj1b_
        mutant
      2. 954992Domain d3m3vb_: 3m3v B: [180808]
        automated match to d1uj1b_
        mutant

More info for Protein automated matches from b.47.1.4: Viral cysteine protease of trypsin fold

Timeline for Protein automated matches from b.47.1.4: Viral cysteine protease of trypsin fold:

  • Protein automated matches from b.47.1.4: Viral cysteine protease of trypsin fold is new in SCOPe 2.01-stable
  • Protein automated matches from b.47.1.4: Viral cysteine protease of trypsin fold appears in SCOPe 2.02
  • Protein automated matches from b.47.1.4: Viral cysteine protease of trypsin fold appears in the current release, SCOPe 2.08