Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2387558Fold b.47: Trypsin-like serine proteases [50493] (1 superfamily)
    barrel, closed; n=6, S=8; greek-key
    duplication: consists of two domains of the same fold
  4. 2387559Superfamily b.47.1: Trypsin-like serine proteases [50494] (5 families) (S)
  5. 2389935Family b.47.1.4: Viral cysteine protease of trypsin fold [50603] (5 protein domains)
  6. 2390138Protein automated matches [190384] (19 species)
    not a true protein

Species:

  1. 2390139Coxsackievirus b3 [TaxId:103903] [188647] (1 PDB entry)
  2. 2390141Echovirus 1 (strain human/egypt/farouk/1951) [TaxId:103908] [323603] (1 PDB entry)
  3. 2390144Enterovirus a71 [TaxId:39054] [279546] (12 PDB entries)
    1. Domain for 5bpe:
    2. Domains for 5c1u:
      1. 2390145Domain d5c1ua1: 5c1u A:1-180 [317935]
        Other proteins in same PDB: d5c1ua2, d5c1ub2
        automated match to d2vb0a_
        complexed with ghv
      2. 2390146Domain d5c1ub1: 5c1u B:1-180 [317893]
        Other proteins in same PDB: d5c1ua2, d5c1ub2
        automated match to d2vb0a_
        complexed with ghv
    3. Domains for 5c1x:
      1. 2390147Domain d5c1xa1: 5c1x A:1-180 [317910]
        Other proteins in same PDB: d5c1xa2, d5c1xb2
        automated match to d2vb0a_
        complexed with ghx
      2. 2390148Domain d5c1xb1: 5c1x B:1-180 [317928]
        Other proteins in same PDB: d5c1xa2, d5c1xb2
        automated match to d2vb0a_
        complexed with ghx
    4. Domain for 5c1y:
    5. Domain for 5c20:
    6. Domain for 5dp3:
    7. Domains for 5dp4:
      1. 2390154Domain d5dp4a1: 5dp4 A:1-180 [313496]
        Other proteins in same PDB: d5dp4a2, d5dp4b2, d5dp4c2, d5dp4d2
        automated match to d2vb0a_
        complexed with 5e8
      2. 2390155Domain d5dp4b1: 5dp4 B:1-180 [313439]
        Other proteins in same PDB: d5dp4a2, d5dp4b2, d5dp4c2, d5dp4d2
        automated match to d2vb0a_
        complexed with 5e8
      3. 2390156Domain d5dp4c1: 5dp4 C:1-180 [313983]
        Other proteins in same PDB: d5dp4a2, d5dp4b2, d5dp4c2, d5dp4d2
        automated match to d2vb0a_
        complexed with 5e8
      4. 2390157Domain d5dp4d1: 5dp4 D:1-180 [313440]
        Other proteins in same PDB: d5dp4a2, d5dp4b2, d5dp4c2, d5dp4d2
        automated match to d2vb0a_
        complexed with 5e8
    8. Domains for 5dp6:
      1. 2390161Domain d5dp6a_: 5dp6 A: [313438]
        automated match to d2vb0a_
        complexed with 5eb
      2. 2390162Domain d5dp6b_: 5dp6 B: [314486]
        automated match to d2vb0a_
        complexed with 5eb
      3. 2390163Domain d5dp6c_: 5dp6 C: [313437]
        automated match to d2vb0a_
        complexed with 5eb
      4. 2390164Domain d5dp6d_: 5dp6 D: [313993]
        automated match to d2vb0a_
        complexed with 5eb
    9. Domain for 5dp7:
    10. Domain for 5dp8:
    11. Domain for 5dp9:
    12. Domain for 5dpa:
  4. 2390165Foot-and-mouth disease virus (strain a10-61) [TaxId:12112] [187901] (1 PDB entry)
  5. 2390167Foot-and-mouth disease virus [TaxId:12110] [187460] (1 PDB entry)
  6. 2390169Foot-and-mouth disease virus [TaxId:12112] [189099] (2 PDB entries)
    1. Domains for 2wv4:
      1. 2390170Domain d2wv4a_: 2wv4 A: [169651]
        automated match to d2j92a1
      2. 2390171Domain d2wv4b_: 2wv4 B: [169652]
        automated match to d2j92a1
    2. Domains for 2wv5:
      1. 2390172Domain d2wv5a_: 2wv5 A: [169653]
        automated match to d2j92a1
      2. 2390173Domain d2wv5b_: 2wv5 B: [169654]
        automated match to d2j92a1
      3. 2390174Domain d2wv5c_: 2wv5 C: [169655]
        automated match to d2j92a1
      4. 2390175Domain d2wv5d_: 2wv5 D: [169656]
        automated match to d2j92a1
  7. 2390176Human coxsackievirus B3 [TaxId:12072] [188738] (7 PDB entries)
    1. Domain for 2ztx:
    2. Domain for 2zty:
    3. Domains for 2ztz:
      1. 2390181Domain d2ztza_: 2ztz A: [171521]
        automated match to d1l1na_
      2. 2390182Domain d2ztzb_: 2ztz B: [171522]
        automated match to d1l1na_
    4. Domains for 2zu1:
      1. 2390177Domain d2zu1a_: 2zu1 A: [198813]
        automated match to d2zu1b_
        mutant
      2. 2390178Domain d2zu1b_: 2zu1 B: [196614]
        automated match to d2vb0a_
        mutant
    5. Domain for 3zyd:
    6. Domain for 3zye:
    7. Domain for 3zz6:
  8. 2390186Human coxsackievirus [TaxId:12072] [188739] (11 PDB entries)
    1. Domain for 2zu3:
    2. Domains for 3zz3:
      1. 2390190Domain d3zz3a1: 3zz3 A:1-180 [194661]
        Other proteins in same PDB: d3zz3a2, d3zz3b2
        automated match to d2vb0a_
        mutant
      2. 2390191Domain d3zz3b1: 3zz3 B:1-180 [194660]
        Other proteins in same PDB: d3zz3a2, d3zz3b2
        automated match to d2vb0a_
        mutant
    3. Domains for 3zz4:
      1. 2390197Domain d3zz4a1: 3zz4 A:1-180 [194659]
        Other proteins in same PDB: d3zz4a2, d3zz4b2
        automated match to d2vb0a_
        mutant
      2. 2390198Domain d3zz4b1: 3zz4 B:1-180 [194658]
        Other proteins in same PDB: d3zz4a2, d3zz4b2
        automated match to d2vb0a_
        mutant
    4. Domain for 3zz5:
    5. Domain for 3zz7:
    6. Domain for 3zz8:
    7. Domain for 3zz9:
    8. Domain for 3zza:
    9. Domain for 3zzb:
    10. Domain for 3zzc:
    11. Domain for 3zzd:
  9. 2390200Human enterovirus [TaxId:42789] [196804] (9 PDB entries)
    1. Domain for 3zv8:
    2. Domain for 3zv9:
    3. Domain for 3zva:
    4. Domain for 3zvb:
    5. Domain for 3zvc:
    6. Domain for 3zvd:
    7. Domain for 3zve:
    8. Domain for 3zvf:
    9. Domain for 3zvg:
  10. 2390210Human poliovirus 1 [TaxId:12081] [193776] (1 PDB entry)
  11. 2390212Human sars coronavirus [TaxId:227859] [187234] (2 PDB entries)
    1. Domains for 2cgg:
      1. 2390213Domain d2cgga_: 2cgg A: [303658]
        automated match to d2gt7a_
        complexed with bez, dms
      2. 2390214Domain d2cggb_: 2cgg B: [303659]
        automated match to d2gt7a_
        complexed with bez, dms
    2. Domains for 2vj1:
      1. 2390215Domain d2vj1a_: 2vj1 A: [153178]
        automated match to d1uj1a_
        complexed with bez, dms, xp1
      2. 2390216Domain d2vj1b_: 2vj1 B: [153179]
        automated match to d1uj1a_
        complexed with bez, dms, xp1
  12. 2390217Murine norovirus 1 [TaxId:223997] [311357] (5 PDB entries)
    1. Domains for 4ash:
      1. 2390218Domain d4asha1: 4ash A:1-183 [307027]
        Other proteins in same PDB: d4asha2, d4ashb2
        automated match to d2fyqa_
      2. 2390219Domain d4ashb1: 4ash B:1-183 [307029]
        Other proteins in same PDB: d4asha2, d4ashb2
        automated match to d2fyqa_
    2. Domains for 4x2v:
      1. 2390220Domain d4x2va_: 4x2v A: [309946]
        Other proteins in same PDB: d4x2vb2
        automated match to d2fyqa_
        complexed with imd; mutant
      2. 2390221Domain d4x2vb1: 4x2v B:1-184 [309947]
        Other proteins in same PDB: d4x2vb2
        automated match to d2fyqa_
        complexed with imd; mutant
      3. 2390222Domain d4x2vc_: 4x2v C: [309949]
        Other proteins in same PDB: d4x2vb2
        automated match to d2fyqa_
        complexed with imd; mutant
      4. 2390223Domain d4x2vd_: 4x2v D: [309950]
        Other proteins in same PDB: d4x2vb2
        automated match to d2fyqa_
        complexed with imd; mutant
    3. Domains for 4x2w:
      1. 2390227Domain d4x2wa_: 4x2w A: [309951]
        automated match to d2fyqa_
        mutant
      2. 2390228Domain d4x2wb_: 4x2w B: [309952]
        automated match to d2fyqa_
        mutant
    4. Domain for 4x2x:
    5. Domains for 4x2y:
      1. 2390224Domain d4x2ya_: 4x2y A: [309954]
        automated match to d2fyqa_
        mutant
      2. 2390225Domain d4x2yb_: 4x2y B: [309955]
        automated match to d2fyqa_
        mutant
  13. 2390229Norovirus hu/1968/us [TaxId:524364] [311386] (1 PDB entry)
  14. 2390231Norwalk virus (strain gi/human/united states/norwalk/1968) [TaxId:524364] [311468] (3 PDB entries)
    1. Domain for 4xbb:
    2. Domain for 4xbc:
    3. Domains for 4xbd:
      1. 2390232Domain d4xbda1: 4xbd A:1-173 [309997]
        Other proteins in same PDB: d4xbda2, d4xbdb2
        automated match to d2fyqa_
        complexed with m40
      2. 2390233Domain d4xbdb1: 4xbd B:1-173 [309999]
        Other proteins in same PDB: d4xbda2, d4xbdb2
        automated match to d2fyqa_
        complexed with m40
  15. 2390236Norwalk virus [TaxId:37129] [311216] (1 PDB entry)
  16. 2390239Norwalk virus [TaxId:524364] [313606] (11 PDB entries)
    1. Domains for 5dg6:
      1. 2390253Domain d5dg6a1: 5dg6 A:1-173 [314503]
        Other proteins in same PDB: d5dg6a2, d5dg6b2
        automated match to d2fyqa_
        complexed with cl, v66
      2. 2390254Domain d5dg6b1: 5dg6 B:1-173 [314496]
        Other proteins in same PDB: d5dg6a2, d5dg6b2
        automated match to d2fyqa_
        complexed with cl, v66
    2. Domain for 5dgj:
    3. Domain for 5e0g:
    4. Domains for 5e0h:
      1. 2390247Domain d5e0ha1: 5e0h A:1-173 [316902]
        Other proteins in same PDB: d5e0ha2, d5e0hb2
        automated match to d2fyqa_
        complexed with 5lh, gol
      2. 2390248Domain d5e0hb1: 5e0h B:1-172 [316966]
        Other proteins in same PDB: d5e0ha2, d5e0hb2
        automated match to d2fyqa_
        complexed with 5lh, gol
    5. Domain for 5e0j:
    6. Domains for 5t6d:
      1. 2390251Domain d5t6da1: 5t6d A:1-172 [326557]
        Other proteins in same PDB: d5t6da2
        automated match to d2fyqa_
        complexed with n38
      2. 2390252Domain d5t6db_: 5t6d B: [326550]
        Other proteins in same PDB: d5t6da2
        automated match to d2fyqa_
        complexed with n38
    7. Domains for 5t6f:
      1. 2390245Domain d5t6fa1: 5t6f A:1-173 [326551]
        Other proteins in same PDB: d5t6fa2, d5t6fb2
        automated match to d2fyqa_
        complexed with n38
      2. 2390246Domain d5t6fb1: 5t6f B:1-173 [326499]
        Other proteins in same PDB: d5t6fa2, d5t6fb2
        automated match to d2fyqa_
        complexed with n38
    8. Domains for 5t6g:
      1. 2390255Domain d5t6ga1: 5t6g A:1-172 [326506]
        Other proteins in same PDB: d5t6ga2
        automated match to d2fyqa_
        complexed with n40
      2. 2390256Domain d5t6gb_: 5t6g B: [326560]
        Other proteins in same PDB: d5t6ga2
        automated match to d2fyqa_
        complexed with n40
    9. Domain for 5tg1:
    10. Domain for 5tg2:
    11. Domains for 5wej:
      1. 2390249Domain d5weja_: 5wej A: [342919]
        automated match to d2fyqa_
        complexed with v45
      2. 2390250Domain d5wejb_: 5wej B: [342884]
        automated match to d2fyqa_
        complexed with v45
  17. 2390257Porcine epidemic diarrhea virus [TaxId:28295] [311580] (2 PDB entries)
    1. Domains for 4xfq:
      1. 2390258Domain d4xfqa_: 4xfq A: [311581]
        automated match to d3tloa_
      2. 2390259Domain d4xfqb_: 4xfq B: [311629]
        automated match to d3tloa_
    2. Domains for 5hyo:
      1. 2390260Domain d5hyoa_: 5hyo A: [318051]
        automated match to d3tloa_
        complexed with dms, ipa, mpd
      2. 2390261Domain d5hyob_: 5hyo B: [317974]
        automated match to d3tloa_
        complexed with dms, ipa, mpd
  18. 2390262Rhinovirus c [TaxId:463676] [255484] (2 PDB entries)
    1. Domain for 2m5t:
    2. Domains for 5x45:
      1. 3048264Domain d5x45b_: 5x45 B: [348326]
        automated match to d2m5ta_
        complexed with zn
      2. 3048266Domain d5x45d_: 5x45 D: [348328]
        automated match to d2m5ta_
        complexed with zn
      3. 3048310Domain d5x45c_: 5x45 C: [348372]
        automated match to d2m5ta_
        complexed with zn
      4. 3048372Domain d5x45a_: 5x45 A: [348434]
        automated match to d2m5ta_
        complexed with zn
  19. 2390264SARS coronavirus [TaxId:227859] [187411] (13 PDB entries)
    1. Domains for 1wnq:
      1. 2390276Domain d1wnqa_: 1wnq A: [303311]
        automated match to d2amda_
        complexed with enb
      2. 2390277Domain d1wnqb_: 1wnq B: [303312]
        automated match to d2amda_
        complexed with enb
    2. Domains for 1wof:
      1. 2390267Domain d1wofa1: 1wof A:1-305 [161971]
        Other proteins in same PDB: d1wofa2, d1wofb2
        automated match to d1uj1b_
        complexed with i12
      2. 2390268Domain d1wofb1: 1wof B:1-302 [161972]
        Other proteins in same PDB: d1wofa2, d1wofb2
        automated match to d1uj1b_
        complexed with i12
    3. Domains for 2amd:
      1. 2390265Domain d2amda1: 2amd A:1-305 [162828]
        Other proteins in same PDB: d2amda2, d2amdb2
        automated match to d1uj1b_
        complexed with 9in
      2. 2390266Domain d2amdb1: 2amd B:1-302 [162829]
        Other proteins in same PDB: d2amda2, d2amdb2
        automated match to d1uj1b_
        complexed with 9in
    4. Domains for 2amq:
      1. 2390280Domain d2amqa_: 2amq A: [162832]
        automated match to d1uj1b_
      2. 2390281Domain d2amqb_: 2amq B: [162833]
        automated match to d1uj1b_
    5. Domains for 2d2d:
      1. 2390278Domain d2d2da_: 2d2d A: [163557]
        automated match to d1uj1b_
        complexed with enb
      2. 2390279Domain d2d2db_: 2d2d B: [163558]
        automated match to d1uj1b_
        complexed with enb
    6. Domains for 3e91:
      1. 2390282Domain d3e91a_: 3e91 A: [174764]
        automated match to d1uj1b_
        mutant
      2. 2390283Domain d3e91b_: 3e91 B: [174765]
        automated match to d1uj1b_
        mutant
    7. Domains for 3ea7:
      1. 2390284Domain d3ea7a_: 3ea7 A: [174793]
        automated match to d1uj1b_
        mutant
      2. 2390285Domain d3ea7b_: 3ea7 B: [174794]
        automated match to d1uj1b_
        mutant
    8. Domain for 3ea8:
    9. Domain for 3ea9:
    10. Domains for 3eaj:
      1. 2390286Domain d3eaja_: 3eaj A: [174805]
        automated match to d1uj1b_
        mutant
      2. 2390287Domain d3eajb_: 3eaj B: [174806]
        automated match to d1uj1b_
        mutant
    11. Domain for 3m3t:
    12. Domains for 3m3v:
      1. 2390271Domain d3m3va_: 3m3v A: [180807]
        Other proteins in same PDB: d3m3vb2
        automated match to d1uj1b_
        mutant
      2. 2390272Domain d3m3vb1: 3m3v B:1-303 [180808]
        Other proteins in same PDB: d3m3vb2
        automated match to d1uj1b_
        mutant
    13. Domains for 5b6o:
      1. 2390274Domain d5b6oa_: 5b6o A: [318493]
        automated match to d2yy4a_
      2. 2390275Domain d5b6ob_: 5b6o B: [318656]
        automated match to d2yy4a_

More info for Protein automated matches from b.47.1.4: Viral cysteine protease of trypsin fold

Timeline for Protein automated matches from b.47.1.4: Viral cysteine protease of trypsin fold: