SCOPe 2.07: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.07
Class b: All beta proteins [48724] (178 folds)
Fold b.47: Trypsin-like serine proteases [50493] (1 superfamily)
barrel, closed; n=6, S=8; greek-key
duplication: consists of two domains of the same fold
Superfamily b.47.1: Trypsin-like serine proteases [50494] (5 families)
Family b.47.1.4: Viral cysteine protease of trypsin fold [50603] (5 protein domains)
Protein automated matches [190384] (19 species)
not a true protein

Species:

Coxsackievirus b3 [TaxId:103903] [188647] (1 PDB entry)
- Domain for 2vb0:
  - Domain d2vb0a_: 2vb0 A: [168438]
    automated match to d1l1na_
    complexed with cl
Echovirus 1 (strain human/egypt/farouk/1951) [TaxId:103908] [323603] (1 PDB entry)
- Domains for 5iyt:
  1. Domain d5iyta_: 5iyt A: [323606]
    automated match to d2vb0a_
    complexed with nzn
  2. Domain d5iytb_: 5iyt B: [323604]
    automated match to d2vb0a_
    complexed with nzn
Enterovirus a71 [TaxId:39054] [279546] (12 PDB entries)
1. Domain for 5bpe:
  - Domain d5bpea_: 5bpe A: [279547]
    automated match to d3zyda_
    complexed with e22
2. Domains for 5c1u:
  1. Domain d5c1ua1: 5c1u A:1-180 [317935]
    Other proteins in same PDB: d5c1ua2, d5c1ub2
    automated match to d2vb0a_
    complexed with ghv
  2. Domain d5c1ub1: 5c1u B:1-180 [317893]
    Other proteins in same PDB: d5c1ua2, d5c1ub2
    automated match to d2vb0a_
    complexed with ghv
3. Domains for 5c1x:
  1. Domain d5c1xa1: 5c1x A:1-180 [317910]
    Other proteins in same PDB: d5c1xa2, d5c1xb2
    automated match to d2vb0a_
    complexed with ghx
  2. Domain d5c1xb1: 5c1x B:1-180 [317928]
    Other proteins in same PDB: d5c1xa2, d5c1xb2
    automated match to d2vb0a_
    complexed with ghx
4. Domain for 5c1y:
  - Domain d5c1ya1: 5c1y A:1-180 [317897]
    Other proteins in same PDB: d5c1ya2
    automated match to d2vb0a_
    complexed with ghy
5. Domain for 5c20:
  - Domain d5c20a1: 5c20 A:1-180 [317904]
    Other proteins in same PDB: d5c20a2
    automated match to d2vb0a_
    complexed with ghz
6. Domain for 5dp3:
  - Domain d5dp3a1: 5dp3 A:1-180 [313469]
    Other proteins in same PDB: d5dp3a2
    automated match to d2vb0a_
    complexed with 5gh
7. Domains for 5dp4:
  1. Domain d5dp4a1: 5dp4 A:1-180 [313496]
    Other proteins in same PDB: d5dp4a2, d5dp4b2, d5dp4c2, d5dp4d2
    automated match to d2vb0a_
    complexed with 5e8
  2. Domain d5dp4b1: 5dp4 B:1-180 [313439]
    Other proteins in same PDB: d5dp4a2, d5dp4b2, d5dp4c2, d5dp4d2
    automated match to d2vb0a_
    complexed with 5e8
  3. Domain d5dp4c1: 5dp4 C:1-180 [313983]
    Other proteins in same PDB: d5dp4a2, d5dp4b2, d5dp4c2, d5dp4d2
    automated match to d2vb0a_
    complexed with 5e8
  4. Domain d5dp4d1: 5dp4 D:1-180 [313440]
    Other proteins in same PDB: d5dp4a2, d5dp4b2, d5dp4c2, d5dp4d2
    automated match to d2vb0a_
    complexed with 5e8
8. Domains for 5dp6:
  1. Domain d5dp6a_: 5dp6 A: [313438]
    automated match to d2vb0a_
    complexed with 5eb
  2. Domain d5dp6b_: 5dp6 B: [314486]
    automated match to d2vb0a_
    complexed with 5eb
  3. Domain d5dp6c_: 5dp6 C: [313437]
    automated match to d2vb0a_
    complexed with 5eb
  4. Domain d5dp6d_: 5dp6 D: [313993]
    automated match to d2vb0a_
    complexed with 5eb
9. Domain for 5dp7:
  - Domain d5dp7a1: 5dp7 A:1-180 [313994]
    Other proteins in same PDB: d5dp7a2
    automated match to d2vb0a_
    complexed with 5ec
10. Domain for 5dp8:
  - Domain d5dp8a1: 5dp8 A:1-180 [313457]
    Other proteins in same PDB: d5dp8a2
    automated match to d2vb0a_
    complexed with 5ed
11. Domain for 5dp9:
  - Domain d5dp9a1: 5dp9 A:1-180 [314518]
    Other proteins in same PDB: d5dp9a2
    automated match to d2vb0a_
    complexed with 5ex
12. Domain for 5dpa:
  - Domain d5dpaa1: 5dpa A:1-180 [314519]
    Other proteins in same PDB: d5dpaa2
    automated match to d2vb0a_
    complexed with 5f2
Foot-and-mouth disease virus (strain a10-61) [TaxId:12112] [187901] (1 PDB entry)
- Domain for 2j92:
  - Domain d2j92b_: 2j92 B: [147934]
    Other proteins in same PDB: d2j92a1
    automated match to d2j92a1
    mutant
Foot-and-mouth disease virus [TaxId:12110] [187460] (1 PDB entry)
- Domain for 2bhg:
  - Domain d2bhgb_: 2bhg B: [146142]
    Other proteins in same PDB: d2bhga1
    automated match to d2j92a1
Foot-and-mouth disease virus [TaxId:12112] [189099] (2 PDB entries)
1. Domains for 2wv4:
  1. Domain d2wv4a_: 2wv4 A: [169651]
    automated match to d2j92a1
  2. Domain d2wv4b_: 2wv4 B: [169652]
    automated match to d2j92a1
2. Domains for 2wv5:
  1. Domain d2wv5a_: 2wv5 A: [169653]
    automated match to d2j92a1
  2. Domain d2wv5b_: 2wv5 B: [169654]
    automated match to d2j92a1
  3. Domain d2wv5c_: 2wv5 C: [169655]
    automated match to d2j92a1
  4. Domain d2wv5d_: 2wv5 D: [169656]
    automated match to d2j92a1
Human coxsackievirus B3 [TaxId:12072] [188738] (7 PDB entries)
1. Domain for 2ztx:
  - Domain d2ztxa_: 2ztx A: [171519]
    automated match to d1l1na_
    complexed with dtz
2. Domain for 2zty:
  - Domain d2ztya_: 2zty A: [171520]
    automated match to d1l1na_
3. Domains for 2ztz:
  1. Domain d2ztza_: 2ztz A: [171521]
    automated match to d1l1na_
  2. Domain d2ztzb_: 2ztz B: [171522]
    automated match to d1l1na_
4. Domains for 2zu1:
  1. Domain d2zu1a_: 2zu1 A: [198813]
    automated match to d2zu1b_
    mutant
  2. Domain d2zu1b_: 2zu1 B: [196614]
    automated match to d2vb0a_
    mutant
5. Domain for 3zyd:
  - Domain d3zyda1: 3zyd A:1-180 [218582]
    Other proteins in same PDB: d3zyda2
    automated match to d3zzba_
    complexed with gol
6. Domain for 3zye:
  - Domain d3zyea1: 3zye A:1-180 [194744]
    Other proteins in same PDB: d3zyea2
    automated match to d2vb0a_
    mutant
7. Domain for 3zz6:
  - Domain d3zz6a1: 3zz6 A:1-180 [218594]
    Other proteins in same PDB: d3zz6a2
    automated match to d3zzba_
    complexed with g75
Human coxsackievirus [TaxId:12072] [188739] (11 PDB entries)
1. Domain for 2zu3:
  - Domain d2zu3a_: 2zu3 A: [171527]
    automated match to d1l1na_
    complexed with zu3
2. Domains for 3zz3:
  1. Domain d3zz3a1: 3zz3 A:1-180 [194661]
    Other proteins in same PDB: d3zz3a2, d3zz3b2
    automated match to d2vb0a_
    mutant
  2. Domain d3zz3b1: 3zz3 B:1-180 [194660]
    Other proteins in same PDB: d3zz3a2, d3zz3b2
    automated match to d2vb0a_
    mutant
3. Domains for 3zz4:
  1. Domain d3zz4a1: 3zz4 A:1-180 [194659]
    Other proteins in same PDB: d3zz4a2, d3zz4b2
    automated match to d2vb0a_
    mutant
  2. Domain d3zz4b1: 3zz4 B:1-180 [194658]
    Other proteins in same PDB: d3zz4a2, d3zz4b2
    automated match to d2vb0a_
    mutant
4. Domain for 3zz5:
  - Domain d3zz5a1: 3zz5 A:1-180 [218593]
    Other proteins in same PDB: d3zz5a2
    automated match to d3zzba_
    complexed with g74
5. Domain for 3zz7:
  - Domain d3zz7a1: 3zz7 A:1-180 [218595]
    Other proteins in same PDB: d3zz7a2
    automated match to d3zzba_
    complexed with g81
6. Domain for 3zz8:
  - Domain d3zz8a1: 3zz8 A:1-180 [218596]
    Other proteins in same PDB: d3zz8a2
    automated match to d3zzba_
    complexed with g82
7. Domain for 3zz9:
  - Domain d3zz9a1: 3zz9 A:1-180 [194656]
    Other proteins in same PDB: d3zz9a2
    automated match to d2vb0a_
    complexed with g83
8. Domain for 3zza:
  - Domain d3zzaa1: 3zza A:1-180 [194657]
    Other proteins in same PDB: d3zzaa2
    automated match to d2vb0a_
    complexed with g84
9. Domain for 3zzb:
  - Domain d3zzba1: 3zzb A:1-180 [194655]
    Other proteins in same PDB: d3zzba2
    automated match to d2vb0a_
    complexed with g85
10. Domain for 3zzc:
  - Domain d3zzca_: 3zzc A: [194663]
    automated match to d2vb0a_
    complexed with g83; mutant
11. Domain for 3zzd:
  - Domain d3zzda_: 3zzd A: [194662]
    automated match to d2vb0a_
    complexed with g85; mutant
Human enterovirus [TaxId:42789] [196804] (9 PDB entries)
1. Domain for 3zv8:
  - Domain d3zv8a1: 3zv8 A:1-183 [218529]
    Other proteins in same PDB: d3zv8a2
    automated match to d3zv9a_
2. Domain for 3zv9:
  - Domain d3zv9a1: 3zv9 A:1-183 [196805]
    Other proteins in same PDB: d3zv9a2
    automated match to d2vb0a_
    complexed with g74
3. Domain for 3zva:
  - Domain d3zvaa1: 3zva A:1-183 [218530]
    Other proteins in same PDB: d3zvaa2
    automated match to d3zv9a_
    complexed with g75
4. Domain for 3zvb:
  - Domain d3zvba1: 3zvb A:1-183 [196806]
    Other proteins in same PDB: d3zvba2
    automated match to d2vb0a_
    complexed with g81
5. Domain for 3zvc:
  - Domain d3zvca1: 3zvc A:1-183 [218531]
    Other proteins in same PDB: d3zvca2
    automated match to d3zv9a_
    complexed with g82
6. Domain for 3zvd:
  - Domain d3zvda1: 3zvd A:1-183 [218532]
    Other proteins in same PDB: d3zvda2
    automated match to d3zv9a_
    complexed with g83
7. Domain for 3zve:
  - Domain d3zvea1: 3zve A:1-183 [218533]
    Other proteins in same PDB: d3zvea2
    automated match to d3zv9a_
    complexed with g84
8. Domain for 3zvf:
  - Domain d3zvfa1: 3zvf A:1-183 [196807]
    Other proteins in same PDB: d3zvfa2
    automated match to d2vb0a_
    complexed with g85
9. Domain for 3zvg:
  - Domain d3zvga1: 3zvg A:1-183 [218534]
    Other proteins in same PDB: d3zvga2
    automated match to d3zv9a_
    complexed with g86
Human poliovirus 1 [TaxId:12081] [193776] (1 PDB entry)
- Domain for 4dcd:
  - Domain d4dcda1: 4dcd A:1-180 [193777]
    Other proteins in same PDB: d4dcda2
    automated match to d1l1na_
    complexed with dtt, k36, so4
Human sars coronavirus [TaxId:227859] [187234] (2 PDB entries)
1. Domains for 2cgg:
  1. Domain d2cgga_: 2cgg A: [303658]
    automated match to d2gt7a_
    complexed with bez, dms
  2. Domain d2cggb_: 2cgg B: [303659]
    automated match to d2gt7a_
    complexed with bez, dms
2. Domains for 2vj1:
  1. Domain d2vj1a_: 2vj1 A: [153178]
    automated match to d1uj1a_
    complexed with bez, dms, xp1
  2. Domain d2vj1b_: 2vj1 B: [153179]
    automated match to d1uj1a_
    complexed with bez, dms, xp1
Murine norovirus 1 [TaxId:223997] [311357] (5 PDB entries)
1. Domains for 4ash:
  1. Domain d4asha1: 4ash A:1-183 [307027]
    Other proteins in same PDB: d4asha2, d4ashb2
    automated match to d2fyqa_
  2. Domain d4ashb1: 4ash B:1-183 [307029]
    Other proteins in same PDB: d4asha2, d4ashb2
    automated match to d2fyqa_
2. Domains for 4x2v:
  1. Domain d4x2va_: 4x2v A: [309946]
    Other proteins in same PDB: d4x2vb2
    automated match to d2fyqa_
    complexed with imd; mutant
  2. Domain d4x2vb1: 4x2v B:1-184 [309947]
    Other proteins in same PDB: d4x2vb2
    automated match to d2fyqa_
    complexed with imd; mutant
  3. Domain d4x2vc_: 4x2v C: [309949]
    Other proteins in same PDB: d4x2vb2
    automated match to d2fyqa_
    complexed with imd; mutant
  4. Domain d4x2vd_: 4x2v D: [309950]
    Other proteins in same PDB: d4x2vb2
    automated match to d2fyqa_
    complexed with imd; mutant
3. Domains for 4x2w:
  1. Domain d4x2wa_: 4x2w A: [309951]
    automated match to d2fyqa_
    mutant
  2. Domain d4x2wb_: 4x2w B: [309952]
    automated match to d2fyqa_
    mutant
4. Domain for 4x2x:
  - Domain d4x2xa_: 4x2x A: [309953]
    automated match to d2fyqa_
    mutant
5. Domains for 4x2y:
  1. Domain d4x2ya_: 4x2y A: [309954]
    automated match to d2fyqa_
    mutant
  2. Domain d4x2yb_: 4x2y B: [309955]
    automated match to d2fyqa_
    mutant
Norovirus hu/1968/us [TaxId:524364] [311386] (1 PDB entry)
- Domain for 4in1:
  - Domain d4in1a1: 4in1 A:1-181 [307543]
    Other proteins in same PDB: d4in1a2
    automated match to d2fyqa_
    complexed with so4
Norwalk virus (strain gi/human/united states/norwalk/1968) [TaxId:524364] [311468] (3 PDB entries)
1. Domain for 4xbb:
  - Domain d4xbba1: 4xbb A:1-173 [309993]
    Other proteins in same PDB: d4xbba2
    automated match to d2fyqa_
    complexed with 3zr, so4
2. Domain for 4xbc:
  - Domain d4xbca1: 4xbc A:1-181 [309995]
    Other proteins in same PDB: d4xbca2
    automated match to d2fyqa_
    complexed with m40, pg4
3. Domains for 4xbd:
  1. Domain d4xbda1: 4xbd A:1-173 [309997]
    Other proteins in same PDB: d4xbda2, d4xbdb2
    automated match to d2fyqa_
    complexed with m40
  2. Domain d4xbdb1: 4xbd B:1-173 [309999]
    Other proteins in same PDB: d4xbda2, d4xbdb2
    automated match to d2fyqa_
    complexed with m40
Norwalk virus [TaxId:37129] [311216] (1 PDB entry)
- Domains for 2iph:
  1. Domain d2ipha_: 2iph A: [304072]
    automated match to d2fyqa_
    complexed with lgg
  2. Domain d2iphb_: 2iph B: [304073]
    automated match to d2fyqa_
    complexed with lgg
Norwalk virus [TaxId:524364] [313606] (11 PDB entries)
1. Domains for 5dg6:
  1. Domain d5dg6a1: 5dg6 A:1-173 [314503]
    Other proteins in same PDB: d5dg6a2, d5dg6b2
    automated match to d2fyqa_
    complexed with cl, v66
  2. Domain d5dg6b1: 5dg6 B:1-173 [314496]
    Other proteins in same PDB: d5dg6a2, d5dg6b2
    automated match to d2fyqa_
    complexed with cl, v66
2. Domain for 5dgj:
  - Domain d5dgja1: 5dgj A:1-173 [313607]
    Other proteins in same PDB: d5dgja2
    automated match to d2fyqa_
    complexed with v64
3. Domain for 5e0g:
  - Domain d5e0ga1: 5e0g A:1-173 [316914]
    Other proteins in same PDB: d5e0ga2
    automated match to d2fyqa_
    complexed with 5lg, cl
4. Domains for 5e0h:
  1. Domain d5e0ha1: 5e0h A:1-173 [316902]
    Other proteins in same PDB: d5e0ha2, d5e0hb2
    automated match to d2fyqa_
    complexed with 5lh, gol
  2. Domain d5e0hb1: 5e0h B:1-172 [316966]
    Other proteins in same PDB: d5e0ha2, d5e0hb2
    automated match to d2fyqa_
    complexed with 5lh, gol
5. Domain for 5e0j:
  - Domain d5e0ja1: 5e0j A:1-173 [317167]
    Other proteins in same PDB: d5e0ja2
    automated match to d2fyqa_
    complexed with 5lj, cl
6. Domains for 5t6d:
  1. Domain d5t6da1: 5t6d A:1-172 [326557]
    Other proteins in same PDB: d5t6da2
    automated match to d2fyqa_
    complexed with n38
  2. Domain d5t6db_: 5t6d B: [326550]
    Other proteins in same PDB: d5t6da2
    automated match to d2fyqa_
    complexed with n38
7. Domains for 5t6f:
  1. Domain d5t6fa1: 5t6f A:1-173 [326551]
    Other proteins in same PDB: d5t6fa2, d5t6fb2
    automated match to d2fyqa_
    complexed with n38
  2. Domain d5t6fb1: 5t6f B:1-173 [326499]
    Other proteins in same PDB: d5t6fa2, d5t6fb2
    automated match to d2fyqa_
    complexed with n38
8. Domains for 5t6g:
  1. Domain d5t6ga1: 5t6g A:1-172 [326506]
    Other proteins in same PDB: d5t6ga2
    automated match to d2fyqa_
    complexed with n40
  2. Domain d5t6gb_: 5t6g B: [326560]
    Other proteins in same PDB: d5t6ga2
    automated match to d2fyqa_
    complexed with n40
9. Domain for 5tg1:
  - Domain d5tg1a_: 5tg1 A: [328160]
    automated match to d2fyqa_
    complexed with cl, v56
10. Domain for 5tg2:
  - Domain d5tg2a_: 5tg2 A: [328201]
    automated match to d2fyqa_
    complexed with v69
11. Domains for 5wej:
  1. Domain d5weja_: 5wej A: [342919]
    automated match to d2fyqa_
    complexed with v45
  2. Domain d5wejb_: 5wej B: [342884]
    automated match to d2fyqa_
    complexed with v45
Porcine epidemic diarrhea virus [TaxId:28295] [311580] (2 PDB entries)
1. Domains for 4xfq:
  1. Domain d4xfqa_: 4xfq A: [311581]
    automated match to d3tloa_
  2. Domain d4xfqb_: 4xfq B: [311629]
    automated match to d3tloa_
2. Domains for 5hyo:
  1. Domain d5hyoa_: 5hyo A: [318051]
    automated match to d3tloa_
    complexed with dms, ipa, mpd
  2. Domain d5hyob_: 5hyo B: [317974]
    automated match to d3tloa_
    complexed with dms, ipa, mpd
Rhinovirus c [TaxId:463676] [255484] (2 PDB entries)
1. Domain for 2m5t:
  - Domain d2m5ta_: 2m5t A: [243119]
    automated match to d2hrva_
    complexed with zn
2. Domains for 5x45:
  1. Domain d5x45b_: 5x45 B: [348326]
    automated match to d2m5ta_
    complexed with zn
  2. Domain d5x45d_: 5x45 D: [348328]
    automated match to d2m5ta_
    complexed with zn
  3. Domain d5x45c_: 5x45 C: [348372]
    automated match to d2m5ta_
    complexed with zn
  4. Domain d5x45a_: 5x45 A: [348434]
    automated match to d2m5ta_
    complexed with zn
SARS coronavirus [TaxId:227859] [187411] (13 PDB entries)
1. Domains for 1wnq:
  1. Domain d1wnqa_: 1wnq A: [303311]
    automated match to d2amda_
    complexed with enb
  2. Domain d1wnqb_: 1wnq B: [303312]
    automated match to d2amda_
    complexed with enb
2. Domains for 1wof:
  1. Domain d1wofa1: 1wof A:1-305 [161971]
    Other proteins in same PDB: d1wofa2, d1wofb2
    automated match to d1uj1b_
    complexed with i12
  2. Domain d1wofb1: 1wof B:1-302 [161972]
    Other proteins in same PDB: d1wofa2, d1wofb2
    automated match to d1uj1b_
    complexed with i12
3. Domains for 2amd:
  1. Domain d2amda1: 2amd A:1-305 [162828]
    Other proteins in same PDB: d2amda2, d2amdb2
    automated match to d1uj1b_
    complexed with 9in
  2. Domain d2amdb1: 2amd B:1-302 [162829]
    Other proteins in same PDB: d2amda2, d2amdb2
    automated match to d1uj1b_
    complexed with 9in
4. Domains for 2amq:
  1. Domain d2amqa_: 2amq A: [162832]
    automated match to d1uj1b_
  2. Domain d2amqb_: 2amq B: [162833]
    automated match to d1uj1b_
5. Domains for 2d2d:
  1. Domain d2d2da_: 2d2d A: [163557]
    automated match to d1uj1b_
    complexed with enb
  2. Domain d2d2db_: 2d2d B: [163558]
    automated match to d1uj1b_
    complexed with enb
6. Domains for 3e91:
  1. Domain d3e91a_: 3e91 A: [174764]
    automated match to d1uj1b_
    mutant
  2. Domain d3e91b_: 3e91 B: [174765]
    automated match to d1uj1b_
    mutant
7. Domains for 3ea7:
  1. Domain d3ea7a_: 3ea7 A: [174793]
    automated match to d1uj1b_
    mutant
  2. Domain d3ea7b_: 3ea7 B: [174794]
    automated match to d1uj1b_
    mutant
8. Domain for 3ea8:
  - Domain d3ea8a_: 3ea8 A: [174795]
    automated match to d1uj1b_
    mutant
9. Domain for 3ea9:
  - Domain d3ea9a_: 3ea9 A: [174796]
    automated match to d1uj1b_
    mutant
10. Domains for 3eaj:
  1. Domain d3eaja_: 3eaj A: [174805]
    automated match to d1uj1b_
    mutant
  2. Domain d3eajb_: 3eaj B: [174806]
    automated match to d1uj1b_
    mutant
11. Domain for 3m3t:
  - Domain d3m3ta1: 3m3t A:1-305 [180806]
    Other proteins in same PDB: d3m3ta2
    automated match to d1uj1b_
    mutant
12. Domains for 3m3v:
  1. Domain d3m3va_: 3m3v A: [180807]
    Other proteins in same PDB: d3m3vb2
    automated match to d1uj1b_
    mutant
  2. Domain d3m3vb1: 3m3v B:1-303 [180808]
    Other proteins in same PDB: d3m3vb2
    automated match to d1uj1b_
    mutant
13. Domains for 5b6o:
  1. Domain d5b6oa_: 5b6o A: [318493]
    automated match to d2yy4a_
  2. Domain d5b6ob_: 5b6o B: [318656]
    automated match to d2yy4a_

More info for Protein automated matches from b.47.1.4: Viral cysteine protease of trypsin fold

Timeline for Protein automated matches from b.47.1.4: Viral cysteine protease of trypsin fold:

Protein automated matches from b.47.1.4: Viral cysteine protease of trypsin fold first appeared in SCOPe 2.01
Protein automated matches from b.47.1.4: Viral cysteine protease of trypsin fold appears in SCOPe 2.06