Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2000631Fold a.73: Retrovirus capsid protein, N-terminal core domain [47942] (1 superfamily)
    core: 5 helices; bundle
  4. 2000632Superfamily a.73.1: Retrovirus capsid protein, N-terminal core domain [47943] (2 families) (S)
  5. 2000633Family a.73.1.1: Retrovirus capsid protein, N-terminal core domain [47944] (6 protein domains)
  6. 2000764Protein automated matches [190369] (6 species)
    not a true protein

Species:

  1. 2000765Human immunodeficiency virus 1 [TaxId:11676] [187207] (7 PDB entries)
    1. Domain for 2lf4:
    2. Domain for 2pxr:
    3. Domains for 2x2d:
      1. 2000770Domain d2x2dd_: 2x2d D: [169823]
        Other proteins in same PDB: d2x2db_, d2x2dc_
        automated match to d1afva_
      2. 2000771Domain d2x2de_: 2x2d E: [169824]
        Other proteins in same PDB: d2x2db_, d2x2dc_
        automated match to d1afva_
    4. Domains for 2xde:
      1. 2000767Domain d2xdea1: 2xde A:1-146 [170044]
        Other proteins in same PDB: d2xdea2
        automated match to d1m9xc_
        complexed with 1b0
      2. 2000768Domain d2xdeb_: 2xde B: [170045]
        Other proteins in same PDB: d2xdea2
        automated match to d1m9xc_
        complexed with 1b0
    5. Domains for 3nte:
      1. 2000772Domain d3ntea1: 3nte A:1-147 [233045]
        Other proteins in same PDB: d3ntea2, d3nteb2
        automated match to d1e6jp2
        complexed with fe, i3m, iod, na
      2. 2000773Domain d3nteb1: 3nte B:1-147 [233042]
        Other proteins in same PDB: d3ntea2, d3nteb2
        automated match to d1e6jp2
        complexed with fe, i3m, iod, na
    6. Domains for 3p05:
      1. 2000774Domain d3p05a1: 3p05 A:1-147 [239593]
        Other proteins in same PDB: d3p05a2, d3p05b2, d3p05c2, d3p05e2
        automated match to d3p05b1
        complexed with iod
      2. 2000775Domain d3p05b1: 3p05 B:1-147 [233141]
        Other proteins in same PDB: d3p05a2, d3p05b2, d3p05c2, d3p05e2
        automated match to d1e6jp2
        complexed with iod
      3. 2000776Domain d3p05c1: 3p05 C:1-147 [233143]
        Other proteins in same PDB: d3p05a2, d3p05b2, d3p05c2, d3p05e2
        automated match to d1e6jp2
        complexed with iod
      4. 2000777Domain d3p05d1: 3p05 D:1-147 [233142]
        Other proteins in same PDB: d3p05a2, d3p05b2, d3p05c2, d3p05e2
        automated match to d1e6jp2
        complexed with iod
      5. 2000778Domain d3p05e1: 3p05 E:1-147 [239595]
        Other proteins in same PDB: d3p05a2, d3p05b2, d3p05c2, d3p05e2
        automated match to d3p05b1
        complexed with iod
    7. Domain for 4b4n:
  2. 2000780Human immunodeficiency virus type 1 (new york-5 isolate) [TaxId:11698] [232370] (2 PDB entries)
    1. Domain for 3h47:
    2. Domains for 3h4e:
      1. 2000782Domain d3h4ea1: 3h4e A:1-147 [232376]
        Other proteins in same PDB: d3h4ea2, d3h4eb2, d3h4ec2, d3h4ed2, d3h4ee2, d3h4ef2, d3h4eg2, d3h4eh2, d3h4ei2, d3h4ej2, d3h4ek2, d3h4el2
        automated match to d1e6jp2
      2. 2000783Domain d3h4eb1: 3h4e B:1-147 [232374]
        Other proteins in same PDB: d3h4ea2, d3h4eb2, d3h4ec2, d3h4ed2, d3h4ee2, d3h4ef2, d3h4eg2, d3h4eh2, d3h4ei2, d3h4ej2, d3h4ek2, d3h4el2
        automated match to d1e6jp2
      3. 2000784Domain d3h4ec1: 3h4e C:1-147 [232375]
        Other proteins in same PDB: d3h4ea2, d3h4eb2, d3h4ec2, d3h4ed2, d3h4ee2, d3h4ef2, d3h4eg2, d3h4eh2, d3h4ei2, d3h4ej2, d3h4ek2, d3h4el2
        automated match to d1e6jp2
      4. 2000785Domain d3h4ed1: 3h4e D:1-147 [232377]
        Other proteins in same PDB: d3h4ea2, d3h4eb2, d3h4ec2, d3h4ed2, d3h4ee2, d3h4ef2, d3h4eg2, d3h4eh2, d3h4ei2, d3h4ej2, d3h4ek2, d3h4el2
        automated match to d1e6jp2
      5. 2000786Domain d3h4ee1: 3h4e E:1-147 [232378]
        Other proteins in same PDB: d3h4ea2, d3h4eb2, d3h4ec2, d3h4ed2, d3h4ee2, d3h4ef2, d3h4eg2, d3h4eh2, d3h4ei2, d3h4ej2, d3h4ek2, d3h4el2
        automated match to d1e6jp2
      6. 2000787Domain d3h4ef1: 3h4e F:1-147 [232380]
        Other proteins in same PDB: d3h4ea2, d3h4eb2, d3h4ec2, d3h4ed2, d3h4ee2, d3h4ef2, d3h4eg2, d3h4eh2, d3h4ei2, d3h4ej2, d3h4ek2, d3h4el2
        automated match to d1e6jp2
      7. 2000788Domain d3h4eg1: 3h4e G:1-147 [232379]
        Other proteins in same PDB: d3h4ea2, d3h4eb2, d3h4ec2, d3h4ed2, d3h4ee2, d3h4ef2, d3h4eg2, d3h4eh2, d3h4ei2, d3h4ej2, d3h4ek2, d3h4el2
        automated match to d1e6jp2
      8. 2000789Domain d3h4eh1: 3h4e H:1-147 [232381]
        Other proteins in same PDB: d3h4ea2, d3h4eb2, d3h4ec2, d3h4ed2, d3h4ee2, d3h4ef2, d3h4eg2, d3h4eh2, d3h4ei2, d3h4ej2, d3h4ek2, d3h4el2
        automated match to d1e6jp2
      9. 2000790Domain d3h4ei1: 3h4e I:1-147 [232382]
        Other proteins in same PDB: d3h4ea2, d3h4eb2, d3h4ec2, d3h4ed2, d3h4ee2, d3h4ef2, d3h4eg2, d3h4eh2, d3h4ei2, d3h4ej2, d3h4ek2, d3h4el2
        automated match to d1e6jp2
      10. 2000791Domain d3h4ej1: 3h4e J:1-147 [232383]
        Other proteins in same PDB: d3h4ea2, d3h4eb2, d3h4ec2, d3h4ed2, d3h4ee2, d3h4ef2, d3h4eg2, d3h4eh2, d3h4ei2, d3h4ej2, d3h4ek2, d3h4el2
        automated match to d1e6jp2
      11. 2000792Domain d3h4ek1: 3h4e K:1-147 [239333]
        Other proteins in same PDB: d3h4ea2, d3h4eb2, d3h4ec2, d3h4ed2, d3h4ee2, d3h4ef2, d3h4eg2, d3h4eh2, d3h4ei2, d3h4ej2, d3h4ek2, d3h4el2
        automated match to d3h47a1
      12. 2000793Domain d3h4el1: 3h4e L:1-147 [239335]
        Other proteins in same PDB: d3h4ea2, d3h4eb2, d3h4ec2, d3h4ed2, d3h4ee2, d3h4ef2, d3h4eg2, d3h4eh2, d3h4ei2, d3h4ej2, d3h4ek2, d3h4el2
        automated match to d3h47a1
  3. 2000794Human immunodeficiency virus type 1 [TaxId:11698] [232915] (1 PDB entry)
  4. 2000796Human immunodeficiency virus type 2 (isolate d194) [TaxId:11713] [189055] (2 PDB entries)
    1. Domains for 2wlv:
      1. 2000797Domain d2wlva_: 2wlv A: [169438]
        automated match to d1m9dc_
      2. 2000798Domain d2wlvb_: 2wlv B: [169439]
        automated match to d1m9dc_
    2. Domains for 2x82:
      1. 2000799Domain d2x82a_: 2x82 A: [169932]
        automated match to d1m9ec_
      2. 2000800Domain d2x82b_: 2x82 B: [169933]
        automated match to d1m9ec_
      3. 2000801Domain d2x82c_: 2x82 C: [169934]
        automated match to d1m9ec_
      4. 2000802Domain d2x82d_: 2x82 D: [169935]
        automated match to d1m9ec_
  5. 2000803Murine leukemia virus [TaxId:11786] [189823] (1 PDB entry)
  6. 2000805Simian immunodeficiency virus [TaxId:11723] [193087] (1 PDB entry)

More info for Protein automated matches from a.73.1.1: Retrovirus capsid protein, N-terminal core domain

Timeline for Protein automated matches from a.73.1.1: Retrovirus capsid protein, N-terminal core domain: