Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2319937Fold a.29: Bromodomain-like [47363] (15 superfamilies)
    4 helices; bundle; minor mirror variant of up-and-down topology
  4. 2319938Superfamily a.29.2: Bromodomain [47370] (2 families) (S)
  5. 2319939Family a.29.2.1: Bromodomain [47371] (6 proteins)
  6. 2320024Protein automated matches [190366] (2 species)
    not a true protein

Species:

  1. 2320025Human (Homo sapiens) [TaxId:9606] [187201] (67 PDB entries)
    1. Domain for 1b91:
    2. Domains for 3d7c:
      1. 2320068Domain d3d7ca2: 3d7c A:729-837 [157420]
        Other proteins in same PDB: d3d7ca3
        automated match to d1f68a_
      2. 2320069Domain d3d7cb_: 3d7c B: [157421]
        Other proteins in same PDB: d3d7ca3
        automated match to d1f68a_
    3. Domains for 3i3j:
      1. 2320101Domain d3i3ja_: 3i3j A: [178050]
        automated match to d1jspb_
        complexed with cl, peg, so4
      2. 2320102Domain d3i3jb_: 3i3j B: [178051]
        automated match to d1jspb_
        complexed with cl, peg, so4
      3. 2320103Domain d3i3jc_: 3i3j C: [178052]
        automated match to d1jspb_
        complexed with cl, peg, so4
      4. 2320104Domain d3i3jd_: 3i3j D: [178053]
        automated match to d1jspb_
        complexed with cl, peg, so4
      5. 2320105Domain d3i3je_: 3i3j E: [178054]
        automated match to d1jspb_
        complexed with cl, peg, so4
      6. 2320106Domain d3i3jf_: 3i3j F: [178055]
        automated match to d1jspb_
        complexed with cl, peg, so4
      7. 2320107Domain d3i3jg_: 3i3j G: [178056]
        automated match to d1jspb_
        complexed with cl, peg, so4
      8. 2320108Domain d3i3jh_: 3i3j H: [178057]
        automated match to d1jspb_
        complexed with cl, peg, so4
      9. 2320109Domain d3i3ji_: 3i3j I: [178058]
        automated match to d1jspb_
        complexed with cl, peg, so4
      10. 2320110Domain d3i3jj_: 3i3j J: [178059]
        automated match to d1jspb_
        complexed with cl, peg, so4
      11. 2320111Domain d3i3jk_: 3i3j K: [178060]
        automated match to d1jspb_
        complexed with cl, peg, so4
      12. 2320112Domain d3i3jl_: 3i3j L: [178061]
        automated match to d1jspb_
        complexed with cl, peg, so4
    4. Domains for 3p1c:
      1. 2320045Domain d3p1ca_: 3p1c A: [183445]
        automated match to d1jspb_
        complexed with aly, k, scn
      2. 2320046Domain d3p1cb_: 3p1c B: [183446]
        automated match to d1jspb_
        complexed with aly, k, scn
    5. Domains for 3p1d:
      1. 2320054Domain d3p1da_: 3p1d A: [183447]
        automated match to d1jspb_
        complexed with k, mb3, scn
      2. 2320055Domain d3p1db_: 3p1d B: [183448]
        automated match to d1jspb_
        complexed with k, mb3, scn
    6. Domains for 3p1e:
      1. 2320049Domain d3p1ea_: 3p1e A: [183449]
        automated match to d1jspb_
        complexed with dms, k, scn
      2. 2320050Domain d3p1eb_: 3p1e B: [183450]
        automated match to d1jspb_
        complexed with dms, k, scn
    7. Domains for 3p1f:
      1. 2320036Domain d3p1fa1: 3p1f A:1081-1197 [183451]
        Other proteins in same PDB: d3p1fa2
        automated match to d1jspb_
        complexed with 3pf, edo, k
      2. 2320037Domain d3p1fb_: 3p1f B: [183452]
        Other proteins in same PDB: d3p1fa2
        automated match to d1jspb_
        complexed with 3pf, edo, k
    8. Domains for 3svh:
      1. 2320051Domain d3svha_: 3svh A: [200702]
        automated match to d3p1fa_
        complexed with edo, krg
      2. 2320052Domain d3svhb_: 3svh B: [192084]
        automated match to d3p1fa_
        complexed with edo, krg
    9. Domain for 3uv5:
    10. Domains for 4a9k:
      1. 2320041Domain d4a9ka_: 4a9k A: [186740]
        automated match to d1jspb_
        complexed with edo, k, scn, tyl
      2. 2320042Domain d4a9kb_: 4a9k B: [186741]
        automated match to d1jspb_
        complexed with edo, k, scn, tyl
    11. Domains for 4nr4:
      1. 2320056Domain d4nr4a_: 4nr4 A: [229960]
        automated match to d3p1fa_
        complexed with 2lk, edo, mg
      2. 2320057Domain d4nr4b_: 4nr4 B: [229961]
        automated match to d3p1fa_
        complexed with 2lk, edo, mg
    12. Domain for 4nr5:
    13. Domain for 4nr6:
    14. Domain for 4nr7:
    15. Domains for 4nyv:
      1. 2320083Domain d4nyva_: 4nyv A: [236475]
        automated match to d3p1fa_
        complexed with 15e
      2. 2320084Domain d4nyvb_: 4nyv B: [236477]
        automated match to d3p1fa_
        complexed with 15e
      3. 2320085Domain d4nyvc_: 4nyv C: [236478]
        automated match to d3p1ea_
        complexed with 15e
      4. 2320086Domain d4nyvd_: 4nyv D: [236479]
        automated match to d3p1ea_
        complexed with 15e
    16. Domain for 4nyw:
    17. Domain for 4nyx:
    18. Domain for 5bt3:
    19. Domains for 5fdz:
      1. 2320163Domain d5fdza_: 5fdz A: [280409]
        automated match to d1wuma_
        complexed with 5x0, edo
      2. 2320164Domain d5fdzb_: 5fdz B: [280408]
        automated match to d1wuma_
        complexed with 5x0, edo
    20. Domains for 5fe0:
      1. 2320159Domain d5fe0a_: 5fe0 A: [280414]
        automated match to d1wuma_
        complexed with aly
      2. 2320160Domain d5fe0b_: 5fe0 B: [280417]
        automated match to d1wuma_
        complexed with aly
    21. Domains for 5fe1:
      1. 2320148Domain d5fe1a_: 5fe1 A: [280418]
        automated match to d1wuma_
        complexed with 12q, edo
      2. 2320149Domain d5fe1b_: 5fe1 B: [280421]
        automated match to d1wuma_
        complexed with 12q, edo
    22. Domains for 5fe2:
      1. 2320157Domain d5fe2a_: 5fe2 A: [280425]
        automated match to d1wuma_
        complexed with 5wv, edo
      2. 2320158Domain d5fe2b_: 5fe2 B: [280419]
        automated match to d1wuma_
        complexed with 5wv, edo
    23. Domains for 5fe3:
      1. 2320125Domain d5fe3a_: 5fe3 A: [280420]
        automated match to d1wuma_
        complexed with 5wx, edo
      2. 2320126Domain d5fe3b_: 5fe3 B: [280426]
        automated match to d1wuma_
        complexed with 5wx, edo
    24. Domains for 5fe4:
      1. 2320146Domain d5fe4a_: 5fe4 A: [280413]
        automated match to d1wuma_
        complexed with 5wy, edo
      2. 2320147Domain d5fe4b_: 5fe4 B: [280410]
        automated match to d1wuma_
        complexed with 5wy, edo
    25. Domains for 5fe5:
      1. 2320127Domain d5fe5a_: 5fe5 A: [280411]
        automated match to d1wuma_
        complexed with 2qc, dms, edo
      2. 2320128Domain d5fe5b_: 5fe5 B: [280412]
        automated match to d1wuma_
        complexed with 2qc, dms, edo
    26. Domains for 5fe6:
      1. 2320092Domain d5fe6a_: 5fe6 A: [280432]
        automated match to d1wuma_
        complexed with 5wz, dms, edo
      2. 2320093Domain d5fe6b_: 5fe6 B: [280431]
        automated match to d1wuma_
        complexed with 5wz, dms, edo
    27. Domains for 5fe7:
      1. 2320117Domain d5fe7a_: 5fe7 A: [280415]
        automated match to d1wuma_
        complexed with 5wu, dms, edo
      2. 2320118Domain d5fe7b_: 5fe7 B: [280416]
        automated match to d1wuma_
        complexed with 5wu, dms, edo
    28. Domains for 5fe8:
      1. 2320123Domain d5fe8a_: 5fe8 A: [280424]
        automated match to d1wuma_
        complexed with 5wt, dms, edo
      2. 2320124Domain d5fe8b_: 5fe8 B: [280422]
        automated match to d1wuma_
        complexed with 5wt, dms, edo
    29. Domains for 5fe9:
      1. 2320161Domain d5fe9a_: 5fe9 A: [280423]
        automated match to d1wuma_
        complexed with 5ws, edo
      2. 2320162Domain d5fe9b_: 5fe9 B: [280430]
        automated match to d1wuma_
        complexed with 5ws, edo
    30. Domains for 5lpk:
      1. 2320139Domain d5lpka_: 5lpk A: [337857]
        automated match to d4nyxa_
        complexed with edo, pg4, so4, xdm
      2. 2320140Domain d5lpkb_: 5lpk B: [338115]
        automated match to d4nyxa_
        complexed with edo, pg4, so4, xdm
      3. 2320141Domain d5lpkc_: 5lpk C: [337861]
        automated match to d4nyxa_
        complexed with edo, pg4, so4, xdm
      4. 2320142Domain d5lpkd_: 5lpk D: [337884]
        automated match to d4nyxa_
        complexed with edo, pg4, so4, xdm
      5. 2320143Domain d5lpke_: 5lpk E: [337902]
        automated match to d4nyxa_
        complexed with edo, pg4, so4, xdm
      6. 2320144Domain d5lpkf_: 5lpk F: [337899]
        automated match to d4nyxa_
        complexed with edo, pg4, so4, xdm
      7. 2320145Domain d5lpkg_: 5lpk G: [338088]
        automated match to d4nyxa_
        complexed with edo, pg4, so4, xdm
    31. Domains for 5lpm:
      1. 2320061Domain d5lpma1: 5lpm A:1048-1161 [337891]
        Other proteins in same PDB: d5lpma2, d5lpmb2
        automated match to d3i3je_
        complexed with 71y, act
      2. 2320062Domain d5lpmb1: 5lpm B:1048-1161 [337862]
        Other proteins in same PDB: d5lpma2, d5lpmb2
        automated match to d3i3je_
        complexed with 71y, act
    32. Domains for 5lvq:
      1. 2320115Domain d5lvqa_: 5lvq A: [324532]
        automated match to d1b91a_
        complexed with 2lx, dms, edo
      2. 2320116Domain d5lvqb_: 5lvq B: [324548]
        automated match to d1b91a_
        complexed with 2lx, dms, edo
    33. Domains for 5lvr:
      1. 2320113Domain d5lvra_: 5lvr A: [324576]
        automated match to d1b91a_
        complexed with 78y, dms, edo
      2. 2320114Domain d5lvrb_: 5lvr B: [324533]
        automated match to d1b91a_
        complexed with 78y, dms, edo
    34. Domains for 5mkx:
      1. 2320081Domain d5mkxa_: 5mkx A: [343163]
        automated match to d1b91a_
        complexed with 82i, bu1, epe, so4
      2. 2320082Domain d5mkxb_: 5mkx B: [343142]
        automated match to d1b91a_
        complexed with 82i, bu1, epe, so4
    35. Domains for 5mlj:
      1. 2320094Domain d5mlja_: 5mlj A: [343181]
        automated match to d1b91a_
        complexed with 9st, edo
      2. 2320095Domain d5mljb_: 5mlj B: [343131]
        automated match to d1b91a_
        complexed with 9st, edo
    36. Domains for 5mpk:
      1. 2320099Domain d5mpka_: 5mpk A: [346607]
        automated match to d4nyxa_
        complexed with 0bc
      2. 2320100Domain d5mpkb_: 5mpk B: [346535]
        automated match to d4nyxa_
        complexed with 0bc
    37. Domain for 5mpn:
    38. Domain for 5nlk:
    39. Domains for 5nu5:
      1. 2320074Domain d5nu5a1: 5nu5 A:1048-1161 [337894]
        Other proteins in same PDB: d5nu5a2, d5nu5b2
        automated match to d3i3je_
        complexed with 99e, edo
      2. 2320075Domain d5nu5b1: 5nu5 B:1048-1161 [337879]
        Other proteins in same PDB: d5nu5a2, d5nu5b2
        automated match to d3i3je_
        complexed with 99e, edo
    40. Domain for 5owk:
    41. Domain for 5w0e:
    42. Domain for 5w0f:
    43. Domains for 5w0l:
      1. 2320066Domain d5w0la_: 5w0l A: [348356]
        automated match to d4nyxa_
        complexed with 9ud
      2. 2320067Domain d5w0lb_: 5w0l B: [348410]
        automated match to d4nyxa_
        complexed with 9ud
    44. Domain for 5w0q:
    45. Domain for 5xxh:
    46. Domains for 6ay3:
      1. 2320043Domain d6ay3a_: 6ay3 A: [349313]
        automated match to d4nyxa_
        complexed with c3j, edo, na
      2. 2320044Domain d6ay3b_: 6ay3 B: [349548]
        automated match to d4nyxa_
        complexed with c3j, edo, na
    47. Domain for 6ay5:
    48. Domain for 6dmk:
    49. Domains for 6fqo:
      1. 2320039Domain d6fqoa_: 6fqo A: [356847]
        Other proteins in same PDB: d6fqob2
        automated match to d4nyxa_
        complexed with e2t, edo
      2. 2320040Domain d6fqob1: 6fqo B:1081-1197 [356801]
        Other proteins in same PDB: d6fqob2
        automated match to d4nyxa_
        complexed with e2t, edo
    50. Domain for 6fqt:
    51. Domain for 6fqu:
    52. Domains for 6fr0:
      1. 2320063Domain d6fr0a_: 6fr0 A: [356869]
        Other proteins in same PDB: d6fr0b2
        automated match to d4nyxa_
        complexed with e3h
      2. 2320064Domain d6fr0b1: 6fr0 B:1081-1197 [356814]
        Other proteins in same PDB: d6fr0b2
        automated match to d4nyxa_
        complexed with e3h
    53. Domains for 6frf:
      1. 2320129Domain d6frfa1: 6frf A:1081-1197 [356765]
        Other proteins in same PDB: d6frfa2
        automated match to d4nyxa_
        complexed with e3t
      2. 2320130Domain d6frfb_: 6frf B: [356774]
        Other proteins in same PDB: d6frfa2
        automated match to d4nyxa_
        complexed with e3t
      3. 2320131Domain d6frfc_: 6frf C: [356851]
        Other proteins in same PDB: d6frfa2
        automated match to d4nyxa_
        complexed with e3t
      4. 2320132Domain d6frfd_: 6frf D: [356752]
        Other proteins in same PDB: d6frfa2
        automated match to d4nyxa_
        complexed with e3t
    54. Domains for 6j3o:
      1. 2320137Domain d6j3oa_: 6j3o A: [368416]
        automated match to d1b91a_
        complexed with b4l
      2. 2320138Domain d6j3ob_: 6j3o B: [368415]
        automated match to d1b91a_
        complexed with b4l
    55. Domains for 6j3p:
      1. 2320071Domain d6j3pa_: 6j3p A: [368418]
        automated match to d1b91a_
        complexed with b8o
      2. 2320072Domain d6j3pb_: 6j3p B: [368417]
        automated match to d1b91a_
        complexed with b8o
    56. Domains for 6lqx:
      1. 2320119Domain d6lqxa_: 6lqx A: [399880]
        automated match to d4nyxa_
        complexed with eoo, na
      2. 2320120Domain d6lqxb_: 6lqx B: [399828]
        automated match to d4nyxa_
        complexed with eoo, na
      3. 2320121Domain d6lqxc_: 6lqx C: [399905]
        automated match to d4nyxa_
        complexed with eoo, na
      4. 2320122Domain d6lqxd_: 6lqx D: [399901]
        automated match to d4nyxa_
        complexed with eoo, na
    57. Domains for 6qst:
      1. 2320133Domain d6qsta_: 6qst A: [382354]
        automated match to d4nyxa_
        complexed with jgk
      2. 2320134Domain d6qstb_: 6qst B: [382403]
        automated match to d4nyxa_
        complexed with jgk
      3. 2320135Domain d6qstc_: 6qst C: [382406]
        automated match to d4nyxa_
        complexed with jgk
      4. 2320136Domain d6qstd_: 6qst D: [382437]
        automated match to d4nyxa_
        complexed with jgk
    58. Domain for 6sqe:
    59. Domain for 6sqf:
    60. Domains for 6sqm:
      1. 2320077Domain d6sqma_: 6sqm A: [391561]
        automated match to d4nyxa_
        complexed with edo, lu5
      2. 2320078Domain d6sqmb_: 6sqm B: [391594]
        automated match to d4nyxa_
        complexed with edo, lu5
      3. 2320079Domain d6sqmc_: 6sqm C: [391584]
        automated match to d4nyxa_
        complexed with edo, lu5
    61. Domains for 6sw3:
      1. 2320029Domain d6sw3a_: 6sw3 A: [375889]
        Other proteins in same PDB: d6sw3b2
        automated match to d4nyxa_
        mutant
      2. 2320030Domain d6sw3b1: 6sw3 B:1081-1197 [375891]
        Other proteins in same PDB: d6sw3b2
        automated match to d4nyxa_
        mutant
    62. Domains for 6sxx:
      1. 2320096Domain d6sxxa_: 6sxx A: [391878]
        automated match to d4nyxa_
        complexed with edo, lxq
      2. 2320097Domain d6sxxb_: 6sxx B: [391751]
        automated match to d4nyxa_
        complexed with edo, lxq
    63. Domains for 6yij:
      1. 2320150Domain d6yija1: 6yij A:1081-1197 [383870]
        Other proteins in same PDB: d6yija2, d6yijb2, d6yijc2, d6yijf2
        automated match to d4nyxa_
        complexed with osn
      2. 2320151Domain d6yijb1: 6yij B:1081-1197 [383927]
        Other proteins in same PDB: d6yija2, d6yijb2, d6yijc2, d6yijf2
        automated match to d4nyxa_
        complexed with osn
      3. 2320152Domain d6yijc1: 6yij C:1081-1197 [383950]
        Other proteins in same PDB: d6yija2, d6yijb2, d6yijc2, d6yijf2
        automated match to d4nyxa_
        complexed with osn
      4. 2320153Domain d6yijd_: 6yij D: [383869]
        Other proteins in same PDB: d6yija2, d6yijb2, d6yijc2, d6yijf2
        automated match to d4nyxa_
        complexed with osn
      5. 2320154Domain d6yije_: 6yij E: [383882]
        Other proteins in same PDB: d6yija2, d6yijb2, d6yijc2, d6yijf2
        automated match to d4nyxa_
        complexed with osn
      6. 2320155Domain d6yijf1: 6yij F:1081-1196 [383886]
        Other proteins in same PDB: d6yija2, d6yijb2, d6yijc2, d6yijf2
        automated match to d4nyxa_
        complexed with osn
      7. 2320156Domain d6yijg_: 6yij G: [383943]
        Other proteins in same PDB: d6yija2, d6yijb2, d6yijc2, d6yijf2
        automated match to d4nyxa_
        complexed with osn
    64. Domains for 6yik:
      1. 2320088Domain d6yika_: 6yik A: [383959]
        automated match to d4nyxa_
        complexed with osq
      2. 2320089Domain d6yikb_: 6yik B: [383920]
        automated match to d4nyxa_
        complexed with osq
      3. 2320090Domain d6yikc_: 6yik C: [383954]
        automated match to d4nyxa_
        complexed with osq
    65. Domain for 6yil:
    66. Domain for 6yim:
    67. Domains for 7kpy:
      1. 2320058Domain d7kpya_: 7kpy A: [405552]
        automated match to d4nyxa_
        complexed with edo, wu1
      2. 2320059Domain d7kpyb_: 7kpy B: [405410]
        automated match to d4nyxa_
        complexed with edo, wu1
  2. 2320167Mouse (Mus musculus) [TaxId:10090] [343120] (2 PDB entries)
    1. Domain for 5ml0:
    2. Domain for 5w0i:

More info for Protein automated matches from a.29.2.1: Bromodomain

Timeline for Protein automated matches from a.29.2.1: Bromodomain: