Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1981147Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies)
    core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
  4. 1981148Superfamily a.4.1: Homeodomain-like [46689] (20 families) (S)
    consists only of helices
  5. 1981149Family a.4.1.1: Homeodomain [46690] (41 protein domains)
    Pfam PF00046
  6. 1981340Protein automated matches [190360] (3 species)
    not a true protein

Species:

  1. 1981341Fruit fly (Drosophila melanogaster) [TaxId:7227] [187191] (6 PDB entries)
    1. Domains for 2r5y:
      1. 1981350Domain d2r5ya1: 2r5y A:75-161 [198331]
        Other proteins in same PDB: d2r5ya2
        automated match to d1b8ia_
        protein/DNA complex
      2. 1981351Domain d2r5yb_: 2r5y B: [151597]
        Other proteins in same PDB: d2r5ya2
        automated match to d1pufb_
        protein/DNA complex
    2. Domains for 2r5z:
      1. 1981348Domain d2r5za_: 2r5z A: [198332]
        automated match to d1b8ia_
        protein/DNA complex
      2. 1981349Domain d2r5zb_: 2r5z B: [151598]
        automated match to d1pufb_
        protein/DNA complex
    3. Domains for 3a01:
      1. 1981344Domain d3a01a_: 3a01 A: [239080]
        automated match to d1b8ia_
        protein/DNA complex
      2. 1981345Domain d3a01b_: 3a01 B: [171618]
        automated match to d1fjla_
        protein/DNA complex
      3. 1981346Domain d3a01e_: 3a01 E: [239081]
        automated match to d1b8ia_
        protein/DNA complex
      4. 1981347Domain d3a01f_: 3a01 F: [171619]
        automated match to d1fjla_
        protein/DNA complex
    4. Domain for 3a02:
    5. Domain for 3lnq:
    6. Domain for 4uut:
  2. 1981353Human (Homo sapiens) [TaxId:9606] [188758] (10 PDB entries)
    1. Domain for 1wjh:
    2. Domain for 2da6:
    3. Domain for 2lmd:
    4. Domain for 2lp0:
    5. Domain for 2msy:
    6. Domain for 2mw8:
    7. Domain for 3cmy:
    8. Domains for 3k2a:
      1. 1981355Domain d3k2aa_: 3k2a A: [178978]
        automated match to d1x2na1
        complexed with act, cl
      2. 1981356Domain d3k2ab_: 3k2a B: [178979]
        automated match to d1x2na1
        complexed with act, cl
    9. Domains for 3rkq:
      1. 1981357Domain d3rkqa1: 3rkq A:138-194 [195443]
        Other proteins in same PDB: d3rkqa2, d3rkqb2
        automated match to d1ftta_
        protein/DNA complex; complexed with mg
      2. 1981358Domain d3rkqb1: 3rkq B:138-193 [195444]
        Other proteins in same PDB: d3rkqa2, d3rkqb2
        automated match to d1ftta_
        protein/DNA complex; complexed with mg
    10. Domains for 4j19:
      1. 1981359Domain d4j19a_: 4j19 A: [252796]
        automated match to d2cufa1
        protein/DNA complex; complexed with cl
      2. 1981360Domain d4j19b_: 4j19 B: [252797]
        automated match to d2cufa1
        protein/DNA complex; complexed with cl
  3. 1981367Mouse (Mus musculus) [TaxId:10090] [255210] (1 PDB entry)

More info for Protein automated matches from a.4.1.1: Homeodomain

Timeline for Protein automated matches from a.4.1.1: Homeodomain: