Lineage for Protein: automated matches

  1. Root: SCOPe 2.01
  2. 901761Class a: All alpha proteins [46456] (284 folds)
  3. 901762Fold a.1: Globin-like [46457] (2 superfamilies)
    core: 6 helices; folded leaf, partly opened
  4. 901763Superfamily a.1.1: Globin-like [46458] (5 families) (S)
  5. 901830Family a.1.1.2: Globins [46463] (27 proteins)
    Heme-binding protein
  6. 903555Protein automated matches [190359] (30 species)
    not a true protein

Species:

  1. 903556Amphitrite ornata [TaxId:129555] [189339] (1 PDB entry)
  2. 903559Ark clam (Scapharca inaequivalvis) [TaxId:6561] [187427] (30 PDB entries)
    1. Domains for 2aup:
      1. 903586Domain d2aupa_: 2aup A: [162902]
        automated match to d1nxfa_
        complexed with hem
      2. 903587Domain d2aupb_: 2aup B: [162903]
        automated match to d1nxfa_
        complexed with hem
    2. Domains for 2auq:
      1. 903576Domain d2auqa_: 2auq A: [162904]
        automated match to d2av0a1
        complexed with cmo, hem
      2. 903577Domain d2auqb_: 2auq B: [162905]
        automated match to d2av0a1
        complexed with cmo, hem
    3. Domains for 2aur:
      1. 903616Domain d2aura_: 2aur A: [162906]
        automated match to d2av0a1
        complexed with hem
      2. 903617Domain d2aurb_: 2aur B: [162907]
        automated match to d2av0a1
        complexed with hem
    4. Domains for 2grf:
      1. 903612Domain d2grfa_: 2grf A: [164811]
        automated match to d1nxfa_
        complexed with hem; mutant
      2. 903613Domain d2grfb_: 2grf B: [164812]
        automated match to d1nxfa_
        complexed with hem; mutant
    5. Domains for 3ugy:
      1. 903606Domain d3ugya_: 3ugy A: [186258]
        automated match to d1nxfa_
        complexed with cmo, hem
      2. 903607Domain d3ugyb_: 3ugy B: [186259]
        automated match to d1nxfa_
        complexed with cmo, hem
    6. Domains for 3ugz:
      1. 903562Domain d3ugza_: 3ugz A: [186260]
        automated match to d1nxfa_
        complexed with cmo, hem
      2. 903563Domain d3ugzb_: 3ugz B: [186261]
        automated match to d1nxfa_
        complexed with cmo, hem
    7. Domains for 3uh3:
      1. 903588Domain d3uh3a_: 3uh3 A: [186262]
        automated match to d1nxfa_
        complexed with cmo, hem
      2. 903589Domain d3uh3b_: 3uh3 B: [186263]
        automated match to d1nxfa_
        complexed with cmo, hem
    8. Domains for 3uh5:
      1. 903608Domain d3uh5a_: 3uh5 A: [186264]
        automated match to d1nxfa_
        complexed with cmo, hem
      2. 903609Domain d3uh5b_: 3uh5 B: [186265]
        automated match to d1nxfa_
        complexed with cmo, hem
    9. Domains for 3uh6:
      1. 903614Domain d3uh6a_: 3uh6 A: [186266]
        automated match to d1nxfa_
        complexed with cmo, hem
      2. 903615Domain d3uh6b_: 3uh6 B: [186267]
        automated match to d1nxfa_
        complexed with cmo, hem
    10. Domains for 3uh7:
      1. 903570Domain d3uh7a_: 3uh7 A: [186268]
        automated match to d1nxfa_
        complexed with cmo, hem
      2. 903571Domain d3uh7b_: 3uh7 B: [186269]
        automated match to d1nxfa_
        complexed with cmo, hem
    11. Domains for 3uhb:
      1. 903568Domain d3uhba_: 3uhb A: [186270]
        automated match to d1nxfa_
        complexed with cmo, hem
      2. 903569Domain d3uhbb_: 3uhb B: [186271]
        automated match to d1nxfa_
        complexed with cmo, hem
    12. Domains for 3uhc:
      1. 903564Domain d3uhca_: 3uhc A: [186272]
        automated match to d1nxfa_
        complexed with cmo, hem
      2. 903565Domain d3uhcb_: 3uhc B: [186273]
        automated match to d1nxfa_
        complexed with cmo, hem
    13. Domains for 3uhd:
      1. 903566Domain d3uhda_: 3uhd A: [186274]
        automated match to d1nxfa_
        complexed with cmo, hem
      2. 903567Domain d3uhdb_: 3uhd B: [186275]
        automated match to d1nxfa_
        complexed with cmo, hem
    14. Domains for 3uhe:
      1. 903618Domain d3uhea_: 3uhe A: [186276]
        automated match to d1nxfa_
        complexed with cmo, hem
      2. 903619Domain d3uheb_: 3uhe B: [186277]
        automated match to d1nxfa_
        complexed with cmo, hem
    15. Domains for 3uhg:
      1. 903580Domain d3uhga_: 3uhg A: [186278]
        automated match to d1nxfa_
        complexed with cmo, hem
      2. 903581Domain d3uhgb_: 3uhg B: [186279]
        automated match to d1nxfa_
        complexed with cmo, hem
    16. Domains for 3uhh:
      1. 903560Domain d3uhha_: 3uhh A: [186280]
        automated match to d1nxfa_
        complexed with cmo, hem
      2. 903561Domain d3uhhb_: 3uhh B: [186281]
        automated match to d1nxfa_
        complexed with cmo, hem
    17. Domains for 3uhi:
      1. 903620Domain d3uhia_: 3uhi A: [186282]
        automated match to d1nxfa_
        complexed with cmo, hem
      2. 903621Domain d3uhib_: 3uhi B: [186283]
        automated match to d1nxfa_
        complexed with cmo, hem
      3. 903622Domain d3uhic_: 3uhi C: [186284]
        automated match to d1nxfa_
        complexed with cmo, hem
      4. 903623Domain d3uhid_: 3uhi D: [186285]
        automated match to d1nxfa_
        complexed with cmo, hem
    18. Domains for 3uhk:
      1. 903598Domain d3uhka_: 3uhk A: [186286]
        automated match to d1nxfa_
        complexed with hem
      2. 903599Domain d3uhkb_: 3uhk B: [186287]
        automated match to d1nxfa_
        complexed with hem
      3. 903600Domain d3uhkc_: 3uhk C: [186288]
        automated match to d1nxfa_
        complexed with hem
      4. 903601Domain d3uhkd_: 3uhk D: [186289]
        automated match to d1nxfa_
        complexed with hem
    19. Domains for 3uhn:
      1. 903592Domain d3uhna_: 3uhn A: [186290]
        automated match to d1nxfa_
        complexed with hem
      2. 903593Domain d3uhnb_: 3uhn B: [186291]
        automated match to d1nxfa_
        complexed with hem
    20. Domains for 3uhq:
      1. 903578Domain d3uhqa_: 3uhq A: [186292]
        automated match to d1nxfa_
        complexed with hem
      2. 903579Domain d3uhqb_: 3uhq B: [186293]
        automated match to d1nxfa_
        complexed with hem
    21. Domains for 3uhr:
      1. 903584Domain d3uhra_: 3uhr A: [186294]
        automated match to d1nxfa_
        complexed with hem
      2. 903585Domain d3uhrb_: 3uhr B: [186295]
        automated match to d1nxfa_
        complexed with hem
    22. Domains for 3uhs:
      1. 903602Domain d3uhsa_: 3uhs A: [186296]
        automated match to d1nxfa_
        complexed with hem
      2. 903603Domain d3uhsb_: 3uhs B: [186297]
        automated match to d1nxfa_
        complexed with hem
    23. Domains for 3uht:
      1. 903594Domain d3uhta_: 3uht A: [186298]
        automated match to d1nxfa_
        complexed with hem
      2. 903595Domain d3uhtb_: 3uht B: [186299]
        automated match to d1nxfa_
        complexed with hem
    24. Domains for 3uhu:
      1. 903604Domain d3uhua_: 3uhu A: [186300]
        automated match to d1nxfa_
        complexed with hem
      2. 903605Domain d3uhub_: 3uhu B: [186301]
        automated match to d1nxfa_
        complexed with hem
    25. Domains for 3uhv:
      1. 903574Domain d3uhva_: 3uhv A: [186302]
        automated match to d1nxfa_
        complexed with hem
      2. 903575Domain d3uhvb_: 3uhv B: [186303]
        automated match to d1nxfa_
        complexed with hem
    26. Domains for 3uhw:
      1. 903596Domain d3uhwa_: 3uhw A: [186304]
        automated match to d1nxfa_
        complexed with hem
      2. 903597Domain d3uhwb_: 3uhw B: [186305]
        automated match to d1nxfa_
        complexed with hem
    27. Domains for 3uhx:
      1. 903572Domain d3uhxa_: 3uhx A: [186306]
        automated match to d1nxfa_
        complexed with hem
      2. 903573Domain d3uhxb_: 3uhx B: [186307]
        automated match to d1nxfa_
        complexed with hem
    28. Domains for 3uhy:
      1. 903610Domain d3uhya_: 3uhy A: [186308]
        automated match to d1nxfa_
        complexed with hem
      2. 903611Domain d3uhyb_: 3uhy B: [186309]
        automated match to d1nxfa_
        complexed with hem
    29. Domains for 3uhz:
      1. 903590Domain d3uhza_: 3uhz A: [186310]
        automated match to d1nxfa_
        complexed with hem
      2. 903591Domain d3uhzb_: 3uhz B: [186311]
        automated match to d1nxfa_
        complexed with hem
    30. Domains for 3ui0:
      1. 903582Domain d3ui0a_: 3ui0 A: [186312]
        automated match to d1nxfa_
        complexed with hem
      2. 903583Domain d3ui0b_: 3ui0 B: [186313]
        automated match to d1nxfa_
        complexed with hem
  3. 903624Barley (Hordeum vulgare) [TaxId:4513] [187359] (1 PDB entry)
  4. 903633Brycon cephalus [TaxId:126311] [188621] (1 PDB entry)
  5. 903638Buffalo (Bubalus bubalis) [TaxId:89462] [188864] (1 PDB entry)
  6. 903643Camel (Camelus dromedarius) [TaxId:9838] [189249] (1 PDB entry)
  7. 903647Cat (Felis catus) [TaxId:9685] [188888] (4 PDB entries)
    1. Domains for 3d4x:
      1. 903648Domain d3d4xa_: 3d4x A: [173683]
        automated match to d1a00a_
        complexed with hem
      2. 903649Domain d3d4xd_: 3d4x D: [173684]
        automated match to d1fhjb_
        complexed with hem
    2. Domains for 3gqp:
      1. 903650Domain d3gqpa_: 3gqp A: [176916]
        automated match to d1a00a_
        complexed with hem
      2. 903651Domain d3gqpc_: 3gqp C: [176917]
        automated match to d1a00a_
        complexed with hem
    3. Domains for 3gqr:
      1. 903652Domain d3gqra_: 3gqr A: [176918]
        automated match to d1a00a_
        complexed with hem
      2. 903653Domain d3gqrc_: 3gqr C: [176919]
        automated match to d1a00a_
        complexed with hem
      3. 903654Domain d3gqre_: 3gqr E: [176920]
        automated match to d1a00a_
        complexed with hem
      4. 903655Domain d3gqrg_: 3gqr G: [176921]
        automated match to d1a00a_
        complexed with hem
    4. Domains for 3gys:
      1. 903656Domain d3gysa_: 3gys A: [177098]
        automated match to d1a00a_
        complexed with hem
      2. 903657Domain d3gysc_: 3gys C: [177099]
        automated match to d1a00a_
        complexed with hem
      3. 903658Domain d3gyse_: 3gys E: [177100]
        automated match to d1a00a_
        complexed with hem
      4. 903659Domain d3gysg_: 3gys G: [177101]
        automated match to d1a00a_
        complexed with hem
  8. 903660Coturnix japonica [TaxId:93934] [189557] (1 PDB entry)
  9. 903664Domestic pigeon (Columba livia) [TaxId:8932] [188616] (2 PDB entries)
    1. Domains for 2r80:
      1. 903665Domain d2r80a_: 2r80 A: [168002]
        automated match to d1fawa_
        complexed with hem, oxy
      2. 903666Domain d2r80b_: 2r80 B: [168003]
        automated match to d1fawb_
        complexed with hem, oxy
      3. 903667Domain d2r80c_: 2r80 C: [168004]
        automated match to d1fawa_
        complexed with hem, oxy
      4. 903668Domain d2r80d_: 2r80 D: [168005]
        automated match to d1fawb_
        complexed with hem, oxy
    2. Domains for 3dhr:
      1. 903669Domain d3dhra_: 3dhr A: [173959]
        automated match to d1fawa_
        complexed with hem
      2. 903670Domain d3dhrb_: 3dhr B: [173960]
        automated match to d1fawb_
        complexed with hem
      3. 903671Domain d3dhrc_: 3dhr C: [173961]
        automated match to d1fawa_
        complexed with hem
      4. 903672Domain d3dhrd_: 3dhr D: [173962]
        automated match to d1fawb_
        complexed with hem
      5. 903673Domain d3dhre_: 3dhr E: [173963]
        automated match to d1fawa_
        complexed with hem
      6. 903674Domain d3dhrf_: 3dhr F: [173964]
        automated match to d1fawb_
        complexed with hem
      7. 903675Domain d3dhrg_: 3dhr G: [173965]
        automated match to d1fawa_
        complexed with hem
      8. 903676Domain d3dhrh_: 3dhr H: [173966]
        automated match to d1fawb_
        complexed with hem
  10. 903677Duck (Anas platyrhynchos) [TaxId:8839] [189063] (1 PDB entry)
  11. 903680Dusicyon thous [TaxId:9620] [187446] (1 PDB entry)
  12. 903682Goat (Capra hircus) [TaxId:9925] [188635] (2 PDB entries)
    1. Domains for 2ri4:
      1. 903687Domain d2ri4a_: 2ri4 A: [168129]
        automated match to d1fsxa_
        complexed with hem
      2. 903688Domain d2ri4b_: 2ri4 B: [168130]
        automated match to d1fsxb_
        complexed with hem
      3. 903689Domain d2ri4c_: 2ri4 C: [168131]
        automated match to d1fsxa_
        complexed with hem
      4. 903690Domain d2ri4d_: 2ri4 D: [168132]
        automated match to d1fsxb_
        complexed with hem
      5. 903691Domain d2ri4i_: 2ri4 I: [168133]
        automated match to d1fsxa_
        complexed with hem
      6. 903692Domain d2ri4j_: 2ri4 J: [168134]
        automated match to d1fsxb_
        complexed with hem
      7. 903693Domain d2ri4k_: 2ri4 K: [168135]
        automated match to d1fsxa_
        complexed with hem
      8. 903694Domain d2ri4l_: 2ri4 L: [168136]
        automated match to d1fsxb_
        complexed with hem
    2. Domains for 3d1a:
      1. 903683Domain d3d1aa_: 3d1a A: [173613]
        automated match to d1fsxa_
        complexed with hem
      2. 903684Domain d3d1ab_: 3d1a B: [173614]
        automated match to d1fsxb_
        complexed with hem
      3. 903685Domain d3d1ac_: 3d1a C: [173615]
        automated match to d1fsxa_
        complexed with hem
      4. 903686Domain d3d1ad_: 3d1a D: [173616]
        automated match to d1fsxb_
        complexed with hem
  13. 903695Guinea pig (Cavia porcellus) [TaxId:10141] [189281] (2 PDB entries)
    1. Domains for 3a0g:
      1. 903698Domain d3a0ga_: 3a0g A: [171630]
        automated match to d1bz1a_
        complexed with hem, oxy
      2. 903699Domain d3a0gb_: 3a0g B: [171631]
        automated match to d1fhjb_
        complexed with hem, oxy
    2. Domains for 3hyu:
      1. 903696Domain d3hyua_: 3hyu A: [177949]
        automated match to d1bz1a_
        complexed with hem, po4
      2. 903697Domain d3hyub_: 3hyu B: [177950]
        automated match to d1fhjb_
        complexed with hem, po4
  14. 903700Human (Homo sapiens) [TaxId:9606] [188371] (2 PDB entries)
    1. Domain for 2w72:
    2. Domains for 2yrs:
      1. 903702Domain d2yrsb_: 2yrs B: [170873]
        Other proteins in same PDB: d2yrsa_, d2yrsc_, d2yrsi_, d2yrsm_
        automated match to d1dxtb_
        complexed with hem
      2. 903703Domain d2yrsd_: 2yrs D: [170875]
        Other proteins in same PDB: d2yrsa_, d2yrsc_, d2yrsi_, d2yrsm_
        automated match to d1dxtb_
        complexed with hem
      3. 903704Domain d2yrsk_: 2yrs K: [170877]
        Other proteins in same PDB: d2yrsa_, d2yrsc_, d2yrsi_, d2yrsm_
        automated match to d1dxtb_
        complexed with hem
      4. 903705Domain d2yrso_: 2yrs O: [170879]
        Other proteins in same PDB: d2yrsa_, d2yrsc_, d2yrsi_, d2yrsm_
        automated match to d1dxtb_
        complexed with hem
  15. 903706Isurus oxyrinchus [TaxId:57983] [189618] (1 PDB entry)
  16. 903710Lepus europaeus [TaxId:9983] [189630] (1 PDB entry)
  17. 903714Maize (Zea mays) [TaxId:76912] [188014] (1 PDB entry)
  18. 903719Mouse (Mus musculus) [TaxId:10090] [187190] (2 PDB entries)
    1. Domain for 2vry:
    2. Domains for 3hrw:
      1. 903721Domain d3hrwa_: 3hrw A: [177796]
        automated match to d1a00a_
        complexed with hem
      2. 903722Domain d3hrwb_: 3hrw B: [177797]
        automated match to d1jebd_
        complexed with hem
      3. 903723Domain d3hrwd_: 3hrw D: [177798]
        automated match to d1jebd_
        complexed with hem
  19. 903724Norway rat (Rattus norvegicus) [TaxId:10116] [188924] (2 PDB entries)
    1. Domains for 3dht:
      1. 903729Domain d3dhta_: 3dht A: [173967]
        automated match to d1fhja_
        complexed with hem
      2. 903730Domain d3dhtb_: 3dht B: [173968]
        automated match to d1jebd_
        complexed with hem
    2. Domains for 3hf4:
      1. 903725Domain d3hf4a_: 3hf4 A: [177460]
        automated match to d1fhja_
        complexed with hem
      2. 903726Domain d3hf4b_: 3hf4 B: [177461]
        automated match to d1jebd_
        complexed with hem
      3. 903727Domain d3hf4e_: 3hf4 E: [177462]
        automated match to d1fhja_
        complexed with hem
      4. 903728Domain d3hf4f_: 3hf4 F: [177463]
        automated match to d1jebd_
        complexed with hem
  20. 903731Podocnemis unifilis [TaxId:227871] [189922] (2 PDB entries)
    1. Domains for 3at5:
      1. 903732Domain d3at5a_: 3at5 A: [172328]
        automated match to d1fawa_
        protein/DNA complex; complexed with hem
      2. 903733Domain d3at5b_: 3at5 B: [172329]
        automated match to d1wmub_
        protein/DNA complex; complexed with hem
    2. Domains for 3at6:
      1. 903734Domain d3at6a_: 3at6 A: [172330]
        automated match to d1fawa_
        protein/DNA complex; complexed with hem
      2. 903735Domain d3at6b_: 3at6 B: [172331]
        automated match to d1wmub_
        protein/DNA complex; complexed with hem
  21. 903736Pteropus giganteus [TaxId:143291] [188768] (1 PDB entry)
  22. 903739Rabbit (Oryctolagus cuniculus) [TaxId:9986] [188592] (1 PDB entry)
  23. 903744Rainbow trout (Oncorhynchus mykiss) [TaxId:8022] [188309] (2 PDB entries)
    1. Domains for 2r1h:
      1. 903749Domain d2r1ha_: 2r1h A: [167915]
        automated match to d1outa_
        complexed with edo, hem
      2. 903750Domain d2r1hb_: 2r1h B: [167916]
        automated match to d1spgb_
        complexed with edo, hem
      3. 903751Domain d2r1hc_: 2r1h C: [167917]
        automated match to d1outa_
        complexed with edo, hem
      4. 903752Domain d2r1hd_: 2r1h D: [167918]
        automated match to d1spgb_
        complexed with edo, hem
    2. Domains for 3bom:
      1. 903745Domain d3boma_: 3bom A: [172731]
        automated match to d1outa_
        complexed with edo, hem
      2. 903746Domain d3bomb_: 3bom B: [172732]
        automated match to d1spgb_
        complexed with edo, hem
      3. 903747Domain d3bomc_: 3bom C: [172733]
        automated match to d1outa_
        complexed with edo, hem
      4. 903748Domain d3bomd_: 3bom D: [172734]
        automated match to d1spgb_
        complexed with edo, hem
  24. 903753Sheep (Ovis aries) [TaxId:9940] [188522] (1 PDB entry)
  25. 903758Sperm whale (Physeter catodon) [TaxId:9755] [188226] (4 PDB entries)
    1. Domain for 2e2y:
    2. Domain for 2w6x:
    3. Domain for 3k9z:
    4. Domain for 3mn0:
  26. 903763Struthio camelus [TaxId:8801] [188835] (1 PDB entry)
  27. 903768Thunnus atlanticus [TaxId:48168] [187921] (2 PDB entries)
    1. Domain for 2nrl:
    2. Domain for 2nrm:
  28. 903771Thunnus orientalis [TaxId:8238] [187933] (1 PDB entry)
  29. 903773Turkey (Meleagris gallopavo) [TaxId:9103] [189160] (2 PDB entries)
    1. Domains for 2qmb:
      1. 903774Domain d2qmba_: 2qmb A: [167720]
        automated match to d1fawa_
        complexed with hem, oxy
      2. 903775Domain d2qmbc_: 2qmb C: [167721]
        automated match to d1fawa_
        complexed with hem, oxy
      3. 903776Domain d2qmbd_: 2qmb D: [167722]
        automated match to d1hbrd_
        complexed with hem, oxy
    2. Domain for 3k8b:
  30. 903778Yellow perch (Perca flavescens) [TaxId:8167] [188574] (3 PDB entries)
    1. Domains for 3bj1:
      1. 903779Domain d3bj1a_: 3bj1 A: [161614]
        Other proteins in same PDB: d3bj1b_, d3bj1d_
        automated match to d1xq5a_
        complexed with ace, hem
      2. 903780Domain d3bj1c_: 3bj1 C: [161615]
        Other proteins in same PDB: d3bj1b_, d3bj1d_
        automated match to d1xq5a_
        complexed with ace, hem
    2. Domains for 3bj2:
      1. 903781Domain d3bj2a_: 3bj2 A: [161616]
        Other proteins in same PDB: d3bj2b_, d3bj2d_
        automated match to d1xq5a_
        complexed with ace, hem
      2. 903782Domain d3bj2c_: 3bj2 C: [161617]
        Other proteins in same PDB: d3bj2b_, d3bj2d_
        automated match to d1xq5a_
        complexed with ace, hem
    3. Domains for 3bj3:
      1. 903783Domain d3bj3a_: 3bj3 A: [161618]
        Other proteins in same PDB: d3bj3b_, d3bj3d_
        automated match to d1xq5a_
        complexed with ace, hem
      2. 903784Domain d3bj3c_: 3bj3 C: [161619]
        Other proteins in same PDB: d3bj3b_, d3bj3d_
        automated match to d1xq5a_
        complexed with ace, hem

More info for Protein automated matches from a.1.1.2: Globins

Timeline for Protein automated matches from a.1.1.2: Globins: