Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1886641Class d: Alpha and beta proteins (a+b) [53931] (381 folds)
  3. 1892544Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 1892545Superfamily d.15.1: Ubiquitin-like [54236] (9 families) (S)
  5. 1893478Family d.15.1.3: GABARAP-like [54253] (4 proteins)
    intracellular membrane trafficking and fusion proteins
    automatically mapped to Pfam PF02991
  6. 1893500Protein automated matches [190358] (5 species)
    not a true protein

Species:

  1. 1893501Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [188724] (3 PDB entries)
    1. Domain for 2kq7:
    2. Domain for 2kwc:
    3. Domains for 2zpn:
      1. 1893502Domain d2zpna_: 2zpn A: [171401]
        automated match to d1eo6a_
        complexed with so4
      2. 1893503Domain d2zpnb_: 2zpn B: [171402]
        automated match to d1eo6a_
        complexed with so4
      3. 1893504Domain d2zpnc_: 2zpn C: [171403]
        automated match to d1eo6a_
        complexed with so4
      4. 1893505Domain d2zpnd_: 2zpn D: [171404]
        automated match to d1eo6a_
        complexed with so4
  2. 1893508Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [189812] (4 PDB entries)
    1. Domain for 2li5:
    2. Domain for 3rui:
    3. Domain for 3vh3:
    4. Domain for 3vh4:
  3. 1893513Human (Homo sapiens) [TaxId:9606] [187279] (15 PDB entries)
    1. Domain for 2l8j:
    2. Domains for 2r2q:
      1. 1893516Domain d2r2qa_: 2r2q A: [167943]
        automated match to d1gnua_
        complexed with mpd, unx
      2. 1893517Domain d2r2qb_: 2r2q B: [167944]
        automated match to d1gnua_
        complexed with mpd, unx
    3. Domains for 2zjd:
      1. 1893514Domain d2zjda_: 2zjd A: [154484]
        automated match to d1v49a_
      2. 1893515Domain d2zjdc_: 2zjd C: [154485]
        automated match to d1v49a_
    4. Domains for 3eci:
      1. 1893528Domain d3ecia_: 3eci A: [174827]
        automated match to d1v49a_
      2. 1893529Domain d3ecib_: 3eci B: [174828]
        automated match to d1v49a_
    5. Domain for 3vtu:
    6. Domain for 3vtv:
    7. Domains for 3vtw:
      1. 1893530Domain d3vtwa_: 3vtw A: [250680]
        automated match to d2zjdc_
        complexed with so4
      2. 1893531Domain d3vtwb_: 3vtw B: [250681]
        automated match to d2zjdc_
        complexed with so4
      3. 1893532Domain d3vtwc_: 3vtw C: [250682]
        automated match to d2zjdc_
        complexed with so4
    8. Domain for 3wal:
    9. Domains for 3wan:
      1. 1893520Domain d3wana_: 3wan A: [230201]
        automated match to d3vtva_
        complexed with mpd
      2. 1893521Domain d3wanb_: 3wan B: [233939]
        automated match to d3wana_
        complexed with mpd
    10. Domains for 3wao:
      1. 1893533Domain d3waoa_: 3wao A: [230199]
        automated match to d3vtva_
      2. 1893534Domain d3waob_: 3wao B: [230196]
        automated match to d3vtva_
      3. 1893535Domain d3waoc_: 3wao C: [230197]
        automated match to d3vtva_
      4. 1893536Domain d3waod_: 3wao D: [233940]
        automated match to d3waoa_
    11. Domain for 3wap:
    12. Domains for 3x0w:
      1. 1893537Domain d3x0wa_: 3x0w A: [268087]
        automated match to d3waoa_
      2. 1893538Domain d3x0wb_: 3x0w B: [268088]
        automated match to d3waoa_
    13. Domains for 4co7:
      1. 1893523Domain d4co7a_: 4co7 A: [268235]
        automated match to d3dowa_
      2. 1893524Domain d4co7b_: 4co7 B: [268236]
        automated match to d3dowa_
    14. Domains for 4waa:
      1. 1893526Domain d4waaa_: 4waa A: [276754]
        automated match to d3waoa_
      2. 1893527Domain d4waab_: 4waa B: [276759]
        automated match to d3waoa_
    15. Domain for 4zdv:
  4. 1893541Norway rat (Rattus norvegicus) [TaxId:10116] [187189] (3 PDB entries)
    1. Domain for 2z0d:
    2. Domain for 2z0e:
    3. Domain for 2zzp:
  5. 1893545Silkworm (Bombyx mori) [TaxId:7091] [189398] (1 PDB entry)

More info for Protein automated matches from d.15.1.3: GABARAP-like

Timeline for Protein automated matches from d.15.1.3: GABARAP-like: