Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1631855Class d: Alpha and beta proteins (a+b) [53931] (380 folds)
  3. 1650133Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 1652149Superfamily d.58.7: RNA-binding domain, RBD [54928] (6 families) (S)
  5. 1652150Family d.58.7.1: Canonical RBD [54929] (68 proteins)
  6. 1652591Protein automated matches [190332] (3 species)
    not a true protein

Species:

  1. 1652592Caenorhabditis elegans [TaxId:6239] [258944] (3 PDB entries)
    1. Domain for 2mgz:
    2. Domain for 2ru3:
    3. Domain for 4ch0:
  2. 1652596Human (Homo sapiens) [TaxId:9606] [187155] (22 PDB entries)
    1. Domain for 1wtb:
    2. Domain for 1x0f:
    3. Domains for 2ek1:
      1. 1652613Domain d2ek1a_: 2ek1 A: [164107]
        automated match to d2cqpa1
      2. 1652614Domain d2ek1b_: 2ek1 B: [164108]
        automated match to d2cqpa1
      3. 1652615Domain d2ek1c_: 2ek1 C: [164109]
        automated match to d2cqpa1
      4. 1652616Domain d2ek1d_: 2ek1 D: [164110]
        automated match to d2cqpa1
      5. 1652617Domain d2ek1e_: 2ek1 E: [164111]
        automated match to d2cqpa1
      6. 1652618Domain d2ek1f_: 2ek1 F: [164112]
        automated match to d2cqpa1
      7. 1652619Domain d2ek1g_: 2ek1 G: [164113]
        automated match to d2cqpa1
      8. 1652620Domain d2ek1h_: 2ek1 H: [164114]
        automated match to d2cqpa1
    4. Domains for 2ek6:
      1. 1652624Domain d2ek6a_: 2ek6 A: [164121]
        automated match to d2cqpa1
      2. 1652625Domain d2ek6b_: 2ek6 B: [164122]
        automated match to d2cqpa1
      3. 1652626Domain d2ek6c_: 2ek6 C: [164123]
        automated match to d2cqpa1
      4. 1652627Domain d2ek6d_: 2ek6 D: [164124]
        automated match to d2cqpa1
    5. Domain for 2j0s:
    6. Domain for 2kxn:
    7. Domain for 2kyx:
    8. Domains for 2lyv:
      1. 1652643Domain d2lyva1: 2lyv A:1-98 [243047]
        automated match to d1u1qa1
      2. 1652644Domain d2lyva2: 2lyv A:99-196 [243048]
        automated match to d1u1qa2
    9. Domain for 2mhn:
    10. Domains for 3h2v:
      1. 1652633Domain d3h2ve_: 3h2v E: [177160]
        Other proteins in same PDB: d3h2va_, d3h2vb_, d3h2vc_, d3h2vd_
        automated match to d1wi6a1
        protein/RNA complex
      2. 1652634Domain d3h2vf_: 3h2v F: [177161]
        Other proteins in same PDB: d3h2va_, d3h2vb_, d3h2vc_, d3h2vd_
        automated match to d1wi6a1
        protein/RNA complex
      3. 1652635Domain d3h2vg_: 3h2v G: [177162]
        Other proteins in same PDB: d3h2va_, d3h2vb_, d3h2vc_, d3h2vd_
        automated match to d1wi6a1
        protein/RNA complex
      4. 1652636Domain d3h2vh_: 3h2v H: [177163]
        Other proteins in same PDB: d3h2va_, d3h2vb_, d3h2vc_, d3h2vd_
        automated match to d1wi6a1
        protein/RNA complex
    11. Domains for 3k0j:
      1. 1652637Domain d3k0ja_: 3k0j A: [247088]
        automated match to d1dz5a_
        protein/RNA complex; complexed with mg, tpp
      2. 1652638Domain d3k0jb_: 3k0j B: [247089]
        automated match to d1dz5a_
        protein/RNA complex; complexed with mg, tpp
      3. 1652639Domain d3k0jc_: 3k0j C: [247090]
        automated match to d1dz5a_
        protein/RNA complex; complexed with mg, tpp
      4. 1652640Domain d3k0jd_: 3k0j D: [247091]
        automated match to d1dz5a_
        protein/RNA complex; complexed with mg, tpp
    12. Domains for 3lpy:
      1. 1652621Domain d3lpya_: 3lpy A: [180503]
        automated match to d2cqba1
        complexed with epe, so4
      2. 1652622Domain d3lpyb_: 3lpy B: [180504]
        automated match to d2cqba1
        complexed with epe, so4
    13. Domains for 3lqv:
      1. 1652631Domain d3lqva_: 3lqv A: [180519]
        automated match to d2f9da1
        complexed with ade
      2. 1652632Domain d3lqvb_: 3lqv B: [180520]
        automated match to d2f9da1
        complexed with ade
    14. Domains for 3mdf:
      1. 1652609Domain d3mdfa_: 3mdf A: [181019]
        automated match to d2cqba1
      2. 1652610Domain d3mdfb_: 3mdf B: [181020]
        automated match to d2cqba1
    15. Domains for 3s7r:
      1. 1652611Domain d3s7ra_: 3s7r A: [200592]
        automated match to d3s7rb_
        complexed with unl
      2. 1652612Domain d3s7rb_: 3s7r B: [196248]
        automated match to d1hd0a_
        complexed with unl
    16. Domain for 3ulh:
    17. Domains for 3zzy:
      1. 1652597Domain d3zzya_: 3zzy A: [218621]
        automated match to d1sjra_
        protein/RNA complex
      2. 1652598Domain d3zzyb_: 3zzy B: [218622]
        automated match to d1sjra_
        protein/RNA complex
    18. Domains for 3zzz:
      1. 1652599Domain d3zzza_: 3zzz A: [218623]
        automated match to d1sjra_
        protein/RNA complex; complexed with iod
      2. 1652600Domain d3zzzb_: 3zzz B: [218624]
        automated match to d1sjra_
        protein/RNA complex; complexed with iod
    19. Domains for 4cq1:
      1. 1652601Domain d4cq1a1: 4cq1 A:337-444 [236982]
        Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
        automated match to d4ckob1
        complexed with cl, zn
      2. 1652602Domain d4cq1b1: 4cq1 B:336-444 [236983]
        Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
        automated match to d4ckob1
        complexed with cl, zn
      3. 1652603Domain d4cq1c1: 4cq1 C:337-444 [236985]
        Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
        automated match to d4ckob1
        complexed with cl, zn
      4. 1652604Domain d4cq1d1: 4cq1 D:337-444 [236988]
        Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
        automated match to d4ckob1
        complexed with cl, zn
      5. 1652605Domain d4cq1e1: 4cq1 E:337-444 [236984]
        Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
        automated match to d4ckob1
        complexed with cl, zn
      6. 1652606Domain d4cq1f1: 4cq1 F:337-444 [236986]
        Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
        automated match to d4ckob1
        complexed with cl, zn
      7. 1652607Domain d4cq1g1: 4cq1 G:337-444 [236987]
        Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
        automated match to d4ckob1
        complexed with cl, zn
      8. 1652608Domain d4cq1h1: 4cq1 H:337-444 [236989]
        Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
        automated match to d4ckob1
        complexed with cl, zn
    20. Domain for 4iuf:
    21. Domains for 4lir:
      1. 1652628Domain d4lira_: 4lir A: [253601]
        automated match to d1wwha1
      2. 1652629Domain d4lirb_: 4lir B: [253602]
        automated match to d1wwha1
    22. Domain for 4w90:
  3. 1652650Mouse (Mus musculus) [TaxId:10090] [188825] (3 PDB entries)
    1. Domain for 2rok:
    2. Domain for 3d2w:
      • 1652651Domain d3d2wa_: 3d2w A: [173655]
        automated match to d1wf0a_
        protein/DNA complex; protein/RNA complex; complexed with po4
    3. Domains for 3v4m:
      1. 1652652Domain d3v4ma_: 3v4m A: [201157]
        automated match to d3v4mb_
        complexed with cl, na
      2. 1652653Domain d3v4mb_: 3v4m B: [195127]
        automated match to d1o0pa_
        complexed with cl, na

More info for Protein automated matches from d.58.7.1: Canonical RBD

Timeline for Protein automated matches from d.58.7.1: Canonical RBD: